In order to submit a job you need to provide its name:</h4>
<p>
<img src="static/name.png" style="border:2px solid blueviolet">
-
+<p>
UNRES server allows three types of simulations:
-local minimization, molecular dynamics, replica exchange molecular dynamics:
+local minimization, molecular dynamics and replica exchange molecular dynamics:
<p>
<img src="static/types.png" style="border:2px solid blueviolet">
<p>
Use "Save & submit" button to start calculations.
+<img src="static/submit.png" style="border:2px solid blueviolet">
<p>
Use "Refresh" button to check the status of simulation:
<p>
until
<img src="static/done.png" style="border:2px solid blueviolet">
<p>
-
-
-<h4>Use "Load example data" button before submitting calculations
-to try all examples listed below:</h4>
+The job status information will start from the "waiting in the queue to
+start", then "running" and finally "postprocessing" before "done".
+<p>
+Any single job can by accessed later using the adress of the web page
+displayed after job submission:
+http://unres-server.chem.ug.edu.pl/details1/570cf15fc638493893ece1f011ea0182/984/
+<br>
+Registered users can save all their jobs and access them after login.
+<p>
+<h4>You can use "Load example data" button before submitting calculations
+to try examples listed below:</h4>
<p>
<ol>
<h4><li>Local minimization of protein A (PDB code:1BDD) structure</h4>
<div class="hiders" style="display:none" >
<p>
+In this example only the PDB code of selected protein (1BDD) is provided
+<p>
<img src="static/min.png" style="border:2px solid blueviolet">
-The results of local minimizations show the UNRES model, its total energy
-and overlap on starting structure:
+The results of local minimizations show the UNRES model of 1BDD protein,
+its total UNRES energy and overlap on starting structure:
<p>
<a href="static/min1.png"><img src="static/min1.png" width="300px"></a>
<a href="static/min2.png"><img src="static/min2.png" width="300px"></a>
+<p>
+All files generated during calculations
+can be viewed/download by clicking on "Directory" link.
</div>
</div>
<p>
Evolution of RMSD, fraction of native contacts and
comparison of CA fluctuations to Bfactor is presented
-only when reference structure is provided as in this case.
+only when reference structure is provided as in this example.
</div>
</div>
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