refine correction

diff --git a/files/refine.sh b/files/refine.sh
index 88e6b69..e7e3b4a 100755 (executable)
--- a/files/refine.sh
+++ b/files/refine.sh
@@ -9,7 +9,7 @@ ln -s $1 tmp1.pdb
 $AMBERHOME/bin/tleap -f /users2/CASP12/EXAMPLES/all-atom/amber_files/leap.bat
 
 /users2/local/mmtsb/perl/convpdb.pl -out generic_noh z_tleap.pdb > noh.pdb
-/users2/local/pymol_1.6/pymol -cq /big/appl/amber_refine/dss.py | awk \
+/users2/local/pymol_1.6/pymol -cq /users2/CASP12/EXAMPLES/all-atom/amber_refine/dss.py | awk \
 '{ires[NR]=$2;ss[NR]=$3}END{for (i=2;i<=NR;i++) {if (ss[i-1]!=ss[i]&&ss[i-1]=="L") printf "%s;",ires[i];if (ss[i-1]!=ss[i]&&ss[i]=="L") printf "%s;%s\n",ires[i-1],ss[i-1]}}' \
 > zakresy.csv