X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;f=source%2Fwham%2Fsrc%2Fparmread.F;h=435ee09bdb56b87d5f136adeb08959265cbaeac2;hb=34d3ad3987785642be58fb2f26557d3314215577;hp=1b66ce01b81dca697fbfe632a0f2e7c3c10d8a0a;hpb=f690e8b70bab14132839afebf080d4a28363b226;p=unres.git

diff --git a/source/wham/src/parmread.F b/source/wham/src/parmread.F
index 1b66ce0..435ee09 100644
--- a/source/wham/src/parmread.F
+++ b/source/wham/src/parmread.F
@@ -51,10 +51,31 @@ C Assign virtual-bond length
         key = wname(i)(:ilen(wname(i)))
         call reada(controlcard,key(:ilen(key)),ww(i),1.0d0)
       enddo
-
+      call reada(controlcard,"D0CM",d0cm,3.78d0)
+      call reada(controlcard,"AKCM",akcm,15.1d0)
+      call reada(controlcard,"AKTH",akth,11.0d0)
+      call reada(controlcard,"AKCT",akct,12.0d0)
+      call reada(controlcard,"V1SS",v1ss,-1.08d0)
+      call reada(controlcard,"V2SS",v2ss,7.61d0)
+      call reada(controlcard,"V3SS",v3ss,13.7d0)
+      call reada(controlcard,"EBR",ebr,-5.50D0)
+c      dyn_ss=(index(controlcard,'DYN_SS').gt.0)
       write (iout,*) "iparm",iparm," myparm",myparm
-c If reading not own parameters, skip assignment
+c      do i=1,maxres
+c        dyn_ss_mask(i)=.false.
+c      enddo
+      do i=1,maxres-1
+        do j=i+1,maxres
+          dyn_ssbond_ij(i,j)=1.0d300
+        enddo
+      enddo
+      call reada(controlcard,"HT",Ht,0.0D0)
 
+c      if(me.eq.king.or..not.out1file) then
+c       print *,'indpdb=',indpdb,' pdbref=',pdbref
+c      endif
+c If reading not own parameters, skip assignment
+cc      write(iout,*) "KURWA", ww(15)
       if (iparm.eq.myparm .or. .not.separate_parset) then
 
 c
@@ -80,6 +101,7 @@ c
       wsccor=ww(19)
 
       endif
+cc      write(iout,*) "KURWA", wstrain,akcm,akth,wsc,dyn_ss
 
       call card_concat(controlcard,.false.)
 
@@ -870,8 +892,27 @@ c           augm(i,j)=0.5D0**(2*expon)*aa(i,j)
         enddo
       enddo
 C
-C Define the SC-p interaction constants
-C
+C Define the SC-p interaction constants and SS bond potentials
+C
+      if (dyn_ss) then
+        ss_depth=ebr/wsc-0.25*eps(1,1)
+        Ht=Ht/wsc-0.25*eps(1,1)
+        akcm=akcm*wstrain/wsc
+        akth=akth*wstrain/wsc
+        akct=akct*wstrain/wsc
+        v1ss=v1ss*wstrain/wsc
+        v2ss=v2ss*wstrain/wsc
+        v3ss=v3ss*wstrain/wsc
+      else
+        ss_depth=ebr/wstrain-0.25*eps(1,1)*wsc/wstrain
+      endif
+       write (iout,*) "Parameters of the SS-bond potential:"
+       write (iout,*) "D0CM",d0cm," AKCM",akcm," AKTH",akth,
+     & " AKCT",akct
+       write (iout,*) "V1SS",v1ss," V2SS",v2ss," V3SS",v3ss
+       write (iout,*) "EBR",ebr," SS_DEPTH",ss_depth
+       write (iout,*)" HT",Ht
+
 #ifdef OLDSCP
       do i=1,20
 C "Soft" SC-p repulsion (causes helices to be too flat, but facilitates 
@@ -920,7 +961,7 @@ C
 C
 C Define the constants of the disulfide bridge
 C
-      ebr=-5.50D0
+c      ebr=-5.50D0
 c
 c Old arbitrary potential - commented out.
 c
@@ -931,21 +972,21 @@ c Constants of the disulfide-bond potential determined based on the RHF/6-31G**
 c energy surface of diethyl disulfide.
 c A. Liwo and U. Kozlowska, 11/24/03
 c
-      D0CM = 3.78d0
-      AKCM = 15.1d0
-      AKTH = 11.0d0
-      AKCT = 12.0d0
-      V1SS =-1.08d0
-      V2SS = 7.61d0
-      V3SS = 13.7d0
+c      D0CM = 3.78d0
+c      AKCM = 15.1d0
+c      AKTH = 11.0d0
+c      AKCT = 12.0d0
+c      V1SS =-1.08d0
+c      V2SS = 7.61d0
+c      V3SS = 13.7d0
 
-      if (lprint) then
-      write (iout,'(/a)') "Disulfide bridge parameters:"
-      write (iout,'(a,f10.2)') 'S-S bridge energy: ',ebr
-      write (iout,'(2(a,f10.2))') 'd0cm:',d0cm,' akcm:',akcm
-      write (iout,'(2(a,f10.2))') 'akth:',akth,' akct:',akct
-      write (iout,'(3(a,f10.2))') 'v1ss:',v1ss,' v2ss:',v2ss,
-     & ' v3ss:',v3ss
-      endif
+c      if (lprint) then
+c      write (iout,'(/a)') "Disulfide bridge parameters:"
+c      write (iout,'(a,f10.2)') 'S-S bridge energy: ',ebr
+c      write (iout,'(2(a,f10.2))') 'd0cm:',d0cm,' akcm:',akcm
+c      write (iout,'(2(a,f10.2))') 'akth:',akth,' akct:',akct
+c      write (iout,'(3(a,f10.2))') 'v1ss:',v1ss,' v2ss:',v2ss,
+c     & ' v3ss:',v3ss
+c      endif
       return
       end