X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;f=source%2Funres%2Fsrc_MIN%2Freadrtns_min.F;h=6352622de1372d5721816583ba41e018d89a5f8d;hb=b14bec9c0dc89d4a0f13baaaff62f982d785485e;hp=dee929a87dbe8586dcee9d7504dc16702e5e118c;hpb=8893a1b93e875425e4b7ceb78242d488665af7b8;p=unres.git

diff --git a/source/unres/src_MIN/readrtns_min.F b/source/unres/src_MIN/readrtns_min.F
index dee929a..6352622 100644
--- a/source/unres/src_MIN/readrtns_min.F
+++ b/source/unres/src_MIN/readrtns_min.F
@@ -118,7 +118,8 @@ C Set up the time limit (caution! The time must be input in minutes!)
       dccart=(index(controlcard,'CART').gt.0)
       overlapsc=(index(controlcard,'OVERLAP').gt.0)
       overlapsc=.not.overlapsc
-      searchsc=(index(controlcard,'SEARCHSC').gt.0)
+      searchsc=(index(controlcard,'NOSEARCHSC').gt.0)
+      searchsc=.not.searchsc
       sideadd=(index(controlcard,'SIDEADD').gt.0)
       energy_dec=(index(controlcard,'ENERGY_DEC').gt.0)
       outpdb=(index(controlcard,'PDBOUT').gt.0)
@@ -422,6 +423,9 @@ c        print *,'Finished reading pdb data'
 c        call contact(.false.,ncont_ref,icont_ref,co)
 
         if (sideadd) then 
+C Following 2 lines for diagnostics; comment out if not needed
+         write (iout,*) "Before sideadd"
+         call intout
          if(me.eq.king.or..not.out1file)
      &    write(iout,*)'Adding sidechains'
          maxsi=1000
@@ -438,7 +442,12 @@ c        call contact(.false.,ncont_ref,icont_ref,co)
      &              i,' after ',nsi,' trials'
           endif
          enddo
+C 9/29/12 Adam: Recalculate coordinates with new side chain positions
+         call chainbuild
         endif  
+C Following 2 lines for diagnostics; comment out if not needed
+        write (iout,*) "After sideadd"
+        call intout
       endif
       if (indpdb.eq.0) then
 C Read sequence if not taken from the pdb file.