X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;f=source%2Funres%2Fsrc_MIN%2Fenergy_p_new_barrier.F;h=7095298d55631bb0f0513e8afe139f688ed80dfb;hb=aa3325db240484cc3d5142ab70985dde83d66ef3;hp=3f1964875edb751d7fb2c84df2192c913a12ab04;hpb=9f605c45699992d6fb00554d15b7b2c0145da2c9;p=unres.git

diff --git a/source/unres/src_MIN/energy_p_new_barrier.F b/source/unres/src_MIN/energy_p_new_barrier.F
index 3f19648..7095298 100644
--- a/source/unres/src_MIN/energy_p_new_barrier.F
+++ b/source/unres/src_MIN/energy_p_new_barrier.F
@@ -4314,6 +4314,8 @@ c
       do i=ibondp_start,ibondp_end
         diff = vbld(i)-vbldp0
 c        write (iout,*) i,vbld(i),vbldp0,diff,AKP*diff*diff
+        if (energy_dec)    write (iout,'(a7,i5,4f7.3)') 
+     &     "estr bb",i,vbld(i),vbldp0,diff,AKP*diff*diff
         estr=estr+diff*diff
         do j=1,3
           gradb(j,i-1)=AKP*diff*dc(j,i-1)/vbld(i)
@@ -4332,6 +4334,12 @@ c
             diff=vbld(i+nres)-vbldsc0(1,iti)
 c            write (iout,*) i,iti,vbld(i+nres),vbldsc0(1,iti),diff,
 c     &      AKSC(1,iti),AKSC(1,iti)*diff*diff
+            if (energy_dec)  then
+              write (iout,*) 
+     &         "estr sc",i,iti,vbld(i+nres),vbldsc0(1,iti),diff,
+     &         AKSC(1,iti),AKSC(1,iti)*diff*diff
+              call flush(iout)
+            endif
             estr=estr+0.5d0*AKSC(1,iti)*diff*diff
             do j=1,3
               gradbx(j,i)=AKSC(1,iti)*diff*dc(j,i+nres)/vbld(i+nres)
@@ -4610,6 +4618,8 @@ C
       logical lprn /.false./, lprn1 /.false./
       etheta=0.0D0
       do i=ithet_start,ithet_end
+        if ((itype(i-1).eq.ntyp1).or.(itype(i-2).eq.ntyp1).or.
+     &(itype(i).eq.ntyp1)) cycle
         dethetai=0.0d0
         dephii=0.0d0
         dephii1=0.0d0
@@ -4619,7 +4629,8 @@ C
           coskt(k)=dcos(k*theti2)
           sinkt(k)=dsin(k*theti2)
         enddo
-        if (i.gt.3) then
+C        if (i.gt.3) then
+        if (i.gt.3 .and. itype(imax0(i-3,1)).ne.ntyp1) then
 #ifdef OSF
           phii=phi(i)
           if (phii.ne.phii) phii=150.0
@@ -4633,13 +4644,13 @@ C
           enddo
         else
           phii=0.0d0
-          ityp1=nthetyp+1
+          ityp1=ithetyp(itype(i-2))
           do k=1,nsingle
             cosph1(k)=0.0d0
             sinph1(k)=0.0d0
           enddo 
         endif
-        if (i.lt.nres) then
+        if ((i.lt.nres).and. itype(i+1).ne.ntyp1) then
 #ifdef OSF
           phii1=phi(i+1)
           if (phii1.ne.phii1) phii1=150.0
@@ -4654,7 +4665,7 @@ C
           enddo
         else
           phii1=0.0d0
-          ityp3=nthetyp+1
+          ityp3=ithetyp(itype(i))
           do k=1,nsingle
             cosph2(k)=0.0d0
             sinph2(k)=0.0d0
@@ -4764,6 +4775,8 @@ C
      &   i,theta(i)*rad2deg,phii*rad2deg,
      &   phii1*rad2deg,ethetai
         etheta=etheta+ethetai
+        if (energy_dec) write (iout,'(a6,i5,0pf7.3)')
+     &      'ebend',i,ethetai
         if (i.gt.3) gloc(i-3,icg)=gloc(i-3,icg)+wang*dephii
         if (i.lt.nres) gloc(i-2,icg)=gloc(i-2,icg)+wang*dephii1
         gloc(nphi+i-2,icg)=wang*dethetai
@@ -5704,12 +5717,14 @@ C 6/23/01 Compute double torsional energy
       include 'COMMON.IOUNITS'
       include 'COMMON.FFIELD'
       include 'COMMON.TORCNSTR'
+      include 'COMMON.CONTROL'
       logical lprn
 C Set lprn=.true. for debugging
       lprn=.false.
 c     lprn=.true.
       etors_d=0.0D0
       do i=iphid_start,iphid_end
+        etors_d_ii=0.0D0
         itori=itortyp(itype(i-2))
         itori1=itortyp(itype(i-1))
         itori2=itortyp(itype(i))
@@ -5729,6 +5744,8 @@ C Regular cosine and sine terms
           sinphi2=dsin(j*phii1)
           etors_d=etors_d+v1cij*cosphi1+v1sij*sinphi1+
      &     v2cij*cosphi2+v2sij*sinphi2
+          if (energy_dec) etors_d_ii=etors_d_ii+
+     &     v1cij*cosphi1+v1sij*sinphi1+v2cij*cosphi2+v2sij*sinphi2
           gloci1=gloci1+j*(v1sij*cosphi1-v1cij*sinphi1)
           gloci2=gloci2+j*(v2sij*cosphi2-v2cij*sinphi2)
         enddo
@@ -5744,12 +5761,17 @@ C Regular cosine and sine terms
             sinphi1m2=dsin(l*phii-(k-l)*phii1)
             etors_d=etors_d+v1cdij*cosphi1p2+v2cdij*cosphi1m2+
      &        v1sdij*sinphi1p2+v2sdij*sinphi1m2
+            if (energy_dec) etors_d_ii=etors_d_ii+
+     &        v1cdij*cosphi1p2+v2cdij*cosphi1m2+
+     &        v1sdij*sinphi1p2+v2sdij*sinphi1m2
             gloci1=gloci1+l*(v1sdij*cosphi1p2+v2sdij*cosphi1m2
      &        -v1cdij*sinphi1p2-v2cdij*sinphi1m2)
             gloci2=gloci2+(k-l)*(v1sdij*cosphi1p2-v2sdij*cosphi1m2
      &        -v1cdij*sinphi1p2+v2cdij*sinphi1m2) 
           enddo
         enddo
+        if (energy_dec) write (iout,'(a6,i5,0pf7.3)')
+     &        'etor_d',i,etors_d_ii
         gloc(i-3,icg)=gloc(i-3,icg)+wtor_d*gloci1
         gloc(i-2,icg)=gloc(i-2,icg)+wtor_d*gloci2
       enddo
@@ -5787,11 +5809,21 @@ c      write (iout,*) "EBACK_SC_COR",itau_start,itau_end
       esccor=0.0D0
       do i=itau_start,itau_end
         esccor_ii=0.0D0
+        if ((itype(i-2).eq.ntyp1).or.(itype(i-1).eq.ntyp1)) cycle
         isccori=isccortyp(itype(i-2))
         isccori1=isccortyp(itype(i-1))
 c      write (iout,*) "EBACK_SC_COR",i,nterm_sccor(isccori,isccori1)
         phii=phi(i)
-        do intertyp=1,3 !intertyp
+
+cccc  Added 9 May 2012
+cc Tauangle is torsional engle depending on the value of first digit 
+c(see comment below)
+cc Omicron is flat angle depending on the value of first digit 
+c(see comment below)
+C        print *,i,tauangle(1,i)
+        
+c        do intertyp=1,3 !intertyp
+        do intertyp=2,2 !intertyp
 cc Added 09 May 2012 (Adasko)
 cc  Intertyp means interaction type of backbone mainchain correlation: 
 c   1 = SC...Ca...Ca...Ca
@@ -5799,18 +5831,16 @@ c   2 = Ca...Ca...Ca...SC
 c   3 = SC...Ca...Ca...SCi
         gloci=0.0D0
         if (((intertyp.eq.3).and.((itype(i-2).eq.10).or.
-     &      (itype(i-1).eq.10).or.(itype(i-2).eq.ntyp1).or.
-     &      (itype(i-1).eq.ntyp1)))
+     &      (itype(i-1).eq.10).or.(itype(i-2).eq.21).or.
+     &      (itype(i-1).eq.21)))
      &    .or. ((intertyp.eq.1).and.((itype(i-2).eq.10)
-     &     .or.(itype(i-2).eq.ntyp1).or.(itype(i-1).eq.ntyp1)
-     &     .or.(itype(i).eq.ntyp1)))
+     &     .or.(itype(i-2).eq.21)))
      &    .or.((intertyp.eq.2).and.((itype(i-1).eq.10).or.
-     &      (itype(i-1).eq.ntyp1).or.(itype(i-2).eq.ntyp1).or.
-     &      (itype(i-3).eq.ntyp1)))) cycle
-        if ((intertyp.eq.2).and.(i.eq.4).and.(itype(1).eq.ntyp1)) cycle
-        if ((intertyp.eq.1).and.(i.eq.nres).and.(itype(nres).eq.ntyp1))
+     &      (itype(i-1).eq.21)))) cycle  
+        if ((intertyp.eq.2).and.(i.eq.4).and.(itype(1).eq.21)) cycle
+        if ((intertyp.eq.1).and.(i.eq.nres).and.(itype(nres).eq.21))
      & cycle
-       do j=1,nterm_sccor(isccori,isccori1)
+        do j=1,nterm_sccor(isccori,isccori1)
           v1ij=v1sccor(j,intertyp,isccori,isccori1)
           v2ij=v2sccor(j,intertyp,isccori,isccori1)
           cosphi=dcos(j*tauangle(intertyp,i))
@@ -5820,14 +5850,20 @@ c   3 = SC...Ca...Ca...SCi
         enddo
 c      write (iout,*) "EBACK_SC_COR",i,esccor,intertyp
         gloc_sc(intertyp,i-3,icg)=gloc_sc(intertyp,i-3,icg)+wsccor*gloci
+c        write (iout,*) "WTF",intertyp,i,itype(i),v1ij*cosphi+v2ij*sinphi
+c     &gloc_sc(intertyp,i-3,icg)
         if (lprn)
      &  write (iout,'(2(a3,2x,i3,2x),2i3,6f8.3/26x,6f8.3/)')
-     &  restyp(itype(i-2)),i-2,restyp(itype(i-1)),i-1,isccori,isccori1,
-     &  (v1sccor(j,intertyp,isccori,isccori1),j=1,6)
-     & ,(v2sccor(j,intertyp,isccori,isccori1),j=1,6)
-C        gsccor_loc(i-3)=gsccor_loc(i-3)+gloci
+     &  restyp(itype(i-2)),i-2,restyp(itype(i-1)),i-1,itori,itori1,
+     &  (v1sccor(j,intertyp,itori,itori1),j=1,6)
+     & ,(v2sccor(j,intertyp,itori,itori1),j=1,6)
+        gsccor_loc(i-3)=gsccor_loc(i-3)+gloci
        enddo !intertyp
       enddo
+c        do i=1,nres
+c        write (iout,*) "W@T@F",  gloc_sc(1,i,icg),gloc_sc(2,i,icg),
+c     &   gloc_sc(3,i,icg)
+c        enddo
       return
       end
 c----------------------------------------------------------------------------