X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;f=source%2Funres%2Fsrc_MD-M%2Finitialize_p.F;h=70e35ab4698b04eb1f031cc11d41874b98fbe4af;hb=0bb81c1c3180a2079d70af7dd534295e1e0b1e4c;hp=4b2b97b301fd31ef1755a34f39fa75c40394c40a;hpb=09cef8a826bd79949bdefd4f8b5dae831a04979e;p=unres.git

diff --git a/source/unres/src_MD-M/initialize_p.F b/source/unres/src_MD-M/initialize_p.F
index 4b2b97b..70e35ab 100644
--- a/source/unres/src_MD-M/initialize_p.F
+++ b/source/unres/src_MD-M/initialize_p.F
@@ -80,7 +80,9 @@ C
       igeom=  8
       intin=  9
       ithep= 11
+      ithep_pdb=51
       irotam=12
+      irotam_pdb=52
       itorp= 13
       itordp= 23
       ielep= 14
@@ -265,8 +267,8 @@ C
 C Initialize constants used to split the energy into long- and short-range
 C components
 C
-      r_cut=2.0d0
-      rlamb=0.3d0
+C      r_cut=2.0d0
+C      rlamb=0.3d0
 #ifndef SPLITELE
       nprint_ene=nprint_ene-1
 #endif
@@ -279,15 +281,17 @@ c-------------------------------------------------------------------------
       include 'COMMON.NAMES'
       include 'COMMON.FFIELD'
       data restyp /
-     &'DD' ,'DPR','DLY','DAR','DHI','DAS','DGL','DSG','DGN','DSN','DTH',
+     &'DD','DAU','DAI','DDB','DSM','DPR','DLY','DAR','DHI','DAS','DGL',
+     & 'DSG','DGN','DSN','DTH',
      &'DYY','DAL','DTY','DTR','DVA','DLE','DIL','DPN','MED','DCY','ZER',
      &'CYS','MET','PHE','ILE','LEU','VAL','TRP','TYR','ALA','GLY','THR',
-     &'SER','GLN','ASN','GLU','ASP','HIS','ARG','LYS','PRO','D'/
+     &'SER','GLN','ASN','GLU','ASP','HIS','ARG','LYS','PRO','SME','DBZ',
+     &'AIB','ABU','D'/
       data onelet /
-     &'z','p','k','r','h','d','e','n','q','s','t','g',
+     &'z','z','z','z','z','p','k','r','h','d','e','n','q','s','t','g',
      &'a','y','w','v','l','i','f','m','c','x',
      &'C','M','F','I','L','V','W','Y','A','G','T',
-     &'S','Q','N','E','D','H','R','K','P','X'/
+     &'S','Q','N','E','D','H','R','K','P','z','z','z','z','X'/
       data potname /'LJ','LJK','BP','GB','GBV'/
       data ename /
      &   "EVDW SC-SC","EVDW2 SC-p","EES p-p","ECORR4 ","ECORR5 ",
@@ -320,11 +324,11 @@ c---------------------------------------------------------------------------
       include 'COMMON.IOUNITS'
       include 'COMMON.DERIV'
       include 'COMMON.CONTACTS'
-      common /przechowalnia/ iturn3_start_all(0:MaxProcs),
-     & iturn3_end_all(0:MaxProcs),iturn4_start_all(0:MaxProcs),
-     & iturn4_end_all(0:MaxProcs),iatel_s_all(0:MaxProcs),
-     & iatel_e_all(0:MaxProcs),ielstart_all(maxres,0:MaxProcs-1),
-     & ielend_all(maxres,0:MaxProcs-1),
+      common /przechowalnia/ iturn3_start_all(0:max_fg_procs),
+     & iturn3_end_all(0:max_fg_procs),iturn4_start_all(0:max_fg_procs),
+     & iturn4_end_all(0:max_fg_procs),iatel_s_all(0:max_fg_procs),
+     &iatel_e_all(0:max_fg_procs),ielstart_all(maxres,0:max_fg_procs-1),
+     & ielend_all(maxres,0:max_fg_procs-1),
      & ntask_cont_from_all(0:max_fg_procs-1),
      & itask_cont_from_all(0:max_fg_procs-1,0:max_fg_procs-1),
      & ntask_cont_to_all(0:max_fg_procs-1),
@@ -1146,15 +1150,16 @@ c---------------------------------------------------------------------------
       include "COMMON.INTERACT"
       include "COMMON.SETUP"
       include "COMMON.IOUNITS"
-      integer ii,jj,itask(4),ntask_cont_to,itask_cont_to(0:MaxProcs-1)
+      integer ii,jj,itask(4),ntask_cont_to,
+     &itask_cont_to(0:max_fg_procs-1)
       logical flag
       integer iturn3_start_all,iturn3_end_all,iturn4_start_all,
      & iturn4_end_all,iatel_s_all,iatel_e_all,ielstart_all,ielend_all
-      common /przechowalnia/ iturn3_start_all(0:MaxProcs),
-     & iturn3_end_all(0:MaxProcs),iturn4_start_all(0:MaxProcs),
-     & iturn4_end_all(0:MaxProcs),iatel_s_all(0:MaxProcs),
-     & iatel_e_all(0:MaxProcs),ielstart_all(maxres,0:MaxProcs-1),
-     & ielend_all(maxres,0:MaxProcs-1)
+      common /przechowalnia/ iturn3_start_all(0:max_fg_procs),
+     & iturn3_end_all(0:max_fg_procs),iturn4_start_all(0:max_fg_procs),
+     & iturn4_end_all(0:max_fg_procs),iatel_s_all(0:max_fg_procs),
+     &iatel_e_all(0:max_fg_procs),ielstart_all(maxres,0:max_fg_procs-1),
+     & ielend_all(maxres,0:max_fg_procs-1)
       integer iproc,isent,k,l
 c Determines whether to send interaction ii,jj to other processors; a given
 c interaction can be sent to at most 2 processors.
@@ -1236,15 +1241,15 @@ c---------------------------------------------------------------------------
       include "COMMON.SETUP"
       include "COMMON.IOUNITS"
       integer ii,jj,itask(2),ntask_cont_from,
-     & itask_cont_from(0:MaxProcs-1)
+     & itask_cont_from(0:max_fg_procs-1)
       logical flag
       integer iturn3_start_all,iturn3_end_all,iturn4_start_all,
      & iturn4_end_all,iatel_s_all,iatel_e_all,ielstart_all,ielend_all
-      common /przechowalnia/ iturn3_start_all(0:MaxProcs),
-     & iturn3_end_all(0:MaxProcs),iturn4_start_all(0:MaxProcs),
-     & iturn4_end_all(0:MaxProcs),iatel_s_all(0:MaxProcs),
-     & iatel_e_all(0:MaxProcs),ielstart_all(maxres,0:MaxProcs-1),
-     & ielend_all(maxres,0:MaxProcs-1)
+      common /przechowalnia/ iturn3_start_all(0:max_fg_procs),
+     & iturn3_end_all(0:max_fg_procs),iturn4_start_all(0:max_fg_procs),
+     & iturn4_end_all(0:max_fg_procs),iatel_s_all(0:max_fg_procs),
+     &iatel_e_all(0:max_fg_procs),ielstart_all(maxres,0:max_fg_procs-1),
+     & ielend_all(maxres,0:max_fg_procs-1)
       integer iproc,k,l
       do iproc=fg_rank+1,nfgtasks-1
         do k=iturn3_start_all(iproc),iturn3_end_all(iproc)
@@ -1296,7 +1301,7 @@ c---------------------------------------------------------------------------
       subroutine add_task(iproc,ntask_cont,itask_cont)
       implicit none
       include "DIMENSIONS"
-      integer iproc,ntask_cont,itask_cont(0:MaxProcs-1)
+      integer iproc,ntask_cont,itask_cont(0:max_fg_procs-1)
       integer ii
       do ii=1,ntask_cont
         if (itask_cont(ii).eq.iproc) return