X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;f=source%2Funres%2Fsrc_MD-M%2Finitialize_p.F;h=33b33a4d9e16ede1e6e24d9ac59ae3e7e689b0b0;hb=cc8bbed784599574de0b4dc917e99ff438a6c6d5;hp=a9414d3dd1c5cf0d5b3af8be72cb2b55c10fcf0c;hpb=69ae998fc42bbd2bb77cbce5bd434374f5b9e78b;p=unres.git

diff --git a/source/unres/src_MD-M/initialize_p.F b/source/unres/src_MD-M/initialize_p.F
index a9414d3..33b33a4 100644
--- a/source/unres/src_MD-M/initialize_p.F
+++ b/source/unres/src_MD-M/initialize_p.F
@@ -80,7 +80,9 @@ C
       igeom=  8
       intin=  9
       ithep= 11
+      ithep_pdb=51
       irotam=12
+      irotam_pdb=52
       itorp= 13
       itordp= 23
       ielep= 14
@@ -161,10 +163,14 @@ c      call memmon_print_usage()
 	rr0(i)=0.0D0
 	a0thet(i)=0.0D0
 	do j=1,2
-	  athet(j,i)=0.0D0
-	  bthet(j,i)=0.0D0
+         do ichir1=-1,1
+          do ichir2=-1,1
+          athet(j,i,ichir1,ichir2)=0.0D0
+          bthet(j,i,ichir1,ichir2)=0.0D0
+          enddo
+         enddo
         enddo
-	do j=0,3
+        do j=0,3
 	  polthet(j,i)=0.0D0
         enddo
 	do j=1,3
@@ -188,15 +194,39 @@ c      call memmon_print_usage()
       enddo
       nlob(ntyp1)=0
       dsc(ntyp1)=0.0D0
-      do i=1,maxtor
-	itortyp(i)=0
-	do j=1,maxtor
-	  do k=1,maxterm
-	    v1(k,j,i)=0.0D0
-	    v2(k,j,i)=0.0D0
+      do i=-maxtor,maxtor
+        itortyp(i)=0
+cc      write (iout,*) "TU DOCHODZE",i,itortyp(i)
+       do iblock=1,2
+        do j=-maxtor,maxtor
+          do k=1,maxterm
+            v1(k,j,i,iblock)=0.0D0
+            v2(k,j,i,iblock)=0.0D0
           enddo
         enddo
+        enddo
       enddo
+      do iblock=1,2
+       do i=-maxtor,maxtor
+        do j=-maxtor,maxtor
+         do k=-maxtor,maxtor
+          do l=1,maxtermd_1
+            v1c(1,l,i,j,k,iblock)=0.0D0
+            v1s(1,l,i,j,k,iblock)=0.0D0
+            v1c(2,l,i,j,k,iblock)=0.0D0
+            v1s(2,l,i,j,k,iblock)=0.0D0
+          enddo !l
+          do l=1,maxtermd_2
+           do m=1,maxtermd_2
+            v2c(m,l,i,j,k,iblock)=0.0D0
+            v2s(m,l,i,j,k,iblock)=0.0D0
+           enddo !m
+          enddo !l
+        enddo !k
+       enddo !j
+      enddo !i
+      enddo !iblock
+
       do i=1,maxres
 	itype(i)=0
 	itel(i)=0
@@ -215,6 +245,22 @@ C Initialize the bridge arrays
 	ihpb(i)=0
 	jhpb(i)=0
       enddo
+C Initialize correlation arrays
+      do i=-maxtor,maxtor
+       do k=1,2
+        b1(k,i)=0.0
+        b2(k,i)=0.0
+        b1tilde(k,i)=0.0
+c        b2tilde(k,i)=0.0
+        do j=1,2
+        CC(j,k,i)=0.0
+        Ctilde(j,k,i)=0.0
+        DD(j,k,i)=0.0
+        Dtilde(j,k,i)=0.0
+        EE(j,k,i)=0.0
+        enddo
+       enddo
+      enddo
 C
 C Initialize timing.
 C
@@ -237,8 +283,8 @@ C
 C Initialize constants used to split the energy into long- and short-range
 C components
 C
-      r_cut=2.0d0
-      rlamb=0.3d0
+C      r_cut=2.0d0
+C      rlamb=0.3d0
 #ifndef SPLITELE
       nprint_ene=nprint_ene-1
 #endif
@@ -251,11 +297,17 @@ c-------------------------------------------------------------------------
       include 'COMMON.NAMES'
       include 'COMMON.FFIELD'
       data restyp /
+     &'DD','DAU','DAI','DDB','DSM','DPR','DLY','DAR','DHI','DAS','DGL',
+     & 'DSG','DGN','DSN','DTH',
+     &'DYY','DAL','DTY','DTR','DVA','DLE','DIL','DPN','MED','DCY','ZER',
      &'CYS','MET','PHE','ILE','LEU','VAL','TRP','TYR','ALA','GLY','THR',
-     &'SER','GLN','ASN','GLU','ASP','HIS','ARG','LYS','PRO','D'/
+     &'SER','GLN','ASN','GLU','ASP','HIS','ARG','LYS','PRO','SME','DBZ',
+     &'AIB','ABU','D'/
       data onelet /
+     &'z','z','z','z','z','p','k','r','h','d','e','n','q','s','t','g',
+     &'a','y','w','v','l','i','f','m','c','x',
      &'C','M','F','I','L','V','W','Y','A','G','T',
-     &'S','Q','N','E','D','H','R','K','P','X'/
+     &'S','Q','N','E','D','H','R','K','P','z','z','z','z','X'/
       data potname /'LJ','LJK','BP','GB','GBV'/
       data ename /
      &   "EVDW SC-SC","EVDW2 SC-p","EES p-p","ECORR4 ","ECORR5 ",
@@ -341,6 +393,7 @@ cd    write (iout,*) 'ns=',ns,' nss=',nss,' ihpb,jhpb',
 cd   &   (ihpb(i),jhpb(i),i=1,nss)
       do i=nnt,nct-1
         scheck=.false.
+        if (dyn_ss) goto 10
         do ii=1,nss
           if (ihpb(ii).eq.i+nres) then
             scheck=.true.
@@ -560,6 +613,9 @@ C Partition local interactions
       iphi_end=iturn3_end+2
       iturn3_start=iturn3_start-1
       iturn3_end=iturn3_end-1
+      call int_bounds(nres-3,itau_start,itau_end)
+      itau_start=itau_start+3
+      itau_end=itau_end+3
       call int_bounds(nres-3,iphi1_start,iphi1_end)
       iphi1_start=iphi1_start+3
       iphi1_end=iphi1_end+3
@@ -1088,10 +1144,13 @@ c        write (iout,*) "MPI_ROTAT2",MPI_ROTAT2
       idihconstr_end=ndih_constr
       iphid_start=iphi_start
       iphid_end=iphi_end-1
+      itau_start=4
+      itau_end=nres
       ibond_start=2
       ibond_end=nres-1
       ibondp_start=nnt
-      ibondp_end=nct-1
+C      ibondp_end=nct-1
+      ibondp_end=nct
       ivec_start=1
       ivec_end=nres-1
       iset_start=3
@@ -1109,14 +1168,15 @@ c---------------------------------------------------------------------------
       include "COMMON.INTERACT"
       include "COMMON.SETUP"
       include "COMMON.IOUNITS"
-      integer ii,jj,itask(4),ntask_cont_to,itask_cont_to(0:max_fg_procs-1)
+      integer ii,jj,itask(4),ntask_cont_to,
+     &itask_cont_to(0:max_fg_procs-1)
       logical flag
       integer iturn3_start_all,iturn3_end_all,iturn4_start_all,
      & iturn4_end_all,iatel_s_all,iatel_e_all,ielstart_all,ielend_all
       common /przechowalnia/ iturn3_start_all(0:max_fg_procs),
      & iturn3_end_all(0:max_fg_procs),iturn4_start_all(0:max_fg_procs),
      & iturn4_end_all(0:max_fg_procs),iatel_s_all(0:max_fg_procs),
-     & iatel_e_all(0:max_fg_procs),ielstart_all(maxres,0:max_fg_procs-1),
+     &iatel_e_all(0:max_fg_procs),ielstart_all(maxres,0:max_fg_procs-1),
      & ielend_all(maxres,0:max_fg_procs-1)
       integer iproc,isent,k,l
 c Determines whether to send interaction ii,jj to other processors; a given