X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;f=source%2Funres%2Fsrc-HCD-5D%2Fenergy_p_new_barrier.F;h=2c701ca0f5a8a5aa0b688d33ba570c39addf7809;hb=25149eedfd23dd08ea519ea9a3c9f3cc0279805f;hp=07cdebb0f089606dcc25b9d42368f18b78d37bfa;hpb=a9f1b123976804db7a99d09f2f43296d9fd1cf0d;p=unres.git

diff --git a/source/unres/src-HCD-5D/energy_p_new_barrier.F b/source/unres/src-HCD-5D/energy_p_new_barrier.F
index 07cdebb..2c701ca 100644
--- a/source/unres/src-HCD-5D/energy_p_new_barrier.F
+++ b/source/unres/src-HCD-5D/energy_p_new_barrier.F
@@ -118,9 +118,17 @@ c        call chainbuild_cart
 c      write (iout,*) "itime_mat",itime_mat," imatupdate",imatupdate
       if (mod(itime_mat,imatupdate).eq.0) then
         call make_SCp_inter_list
+c        write (iout,*) "Finished make_SCp_inter_list"
+c        call flush(iout)
         call make_SCSC_inter_list
+c        write (iout,*) "Finished make_SCSC_inter_list"
+c        call flush(iout)
         call make_pp_inter_list
+c        write (iout,*) "Finished make_pp_inter_list"
+c        call flush(iout)
         call make_pp_vdw_inter_list
+c        write (iout,*) "Finished make_pp_vdw_inter_list"
+c        call flush(iout)
       endif
 c      print *,'Processor',myrank,' calling etotal ipot=',ipot
 c      print *,'Processor',myrank,' nnt=',nnt,' nct=',nct
@@ -366,7 +374,17 @@ c         call flush(iout)
 c         write (iout,*) "MULTIBODY_HB ecorr",ecorr,ecorr5,ecorr6,n_corr,
 c     &     n_corr1
 c         call flush(iout)
+      else
+         ecorr=0.0d0
+         ecorr5=0.0d0
+         ecorr6=0.0d0
+         eturn6=0.0d0
       endif
+#else
+      ecorr=0.0d0
+      ecorr5=0.0d0
+      ecorr6=0.0d0
+      eturn6=0.0d0
 #endif
 c      print *,"Processor",myrank," computed Ucorr"
 c      write (iout,*) "nsaxs",nsaxs," saxs_mode",saxs_mode
@@ -409,15 +427,17 @@ C      print *,"za lipidami"
         call AFMforce(Eafmforce)
       else if (selfguide.gt.0) then
         call AFMvel(Eafmforce)
+      else 
+        Eafmforce=0.0d0
       endif
       if (TUBElog.eq.1) then
 C      print *,"just before call"
         call calctube(Etube)
-       elseif (TUBElog.eq.2) then
+      elseif (TUBElog.eq.2) then
         call calctube2(Etube)
-       else
-       Etube=0.0d0
-       endif
+      else
+        Etube=0.0d0
+      endif
 
 #ifdef TIMING
       time_enecalc=time_enecalc+MPI_Wtime()-time00
@@ -2288,6 +2308,12 @@ C Calculate gradient components.
            fac=rij*fac-2*expon*rrij*e_augm
            fac=fac+(evdwij+e_augm)*sssgrad/sss*rij
 C Calculate the radial part of the gradient
+           gg_lipi(3)=eps1*(eps2rt*eps2rt)
+     &       *(eps3rt*eps3rt)*sss/2.0d0*(faclip*faclip*
+     &        (aa_lip(itypi,itypj)-aa_aq(itypi,itypj))
+     &       +faclip*(bb_lip(itypi,itypj)-bb_aq(itypi,itypj)))
+           gg_lipj(3)=ssgradlipj*gg_lipi(3)
+           gg_lipi(3)=gg_lipi(3)*ssgradlipi
            gg(1)=xj*fac
            gg(2)=yj*fac
            gg(3)=zj*fac
@@ -7694,16 +7720,20 @@ c
          enddo
          
 c         min_odl=minval(distancek)
-         do kk=1,constr_homology
-          if(l_homo(kk,ii)) then 
-            min_odl=distancek(kk)
-            exit
-          endif
-         enddo
-         do kk=1,constr_homology
-          if(l_homo(kk,ii) .and. distancek(kk).lt.min_odl) 
+         if (nexl.gt.0) then
+           min_odl=0.0d0
+         else
+           do kk=1,constr_homology
+            if(l_homo(kk,ii)) then 
+              min_odl=distancek(kk)
+              exit
+            endif
+           enddo
+           do kk=1,constr_homology
+            if(l_homo(kk,ii) .and. distancek(kk).lt.min_odl) 
      &              min_odl=distancek(kk)
-         enddo
+           enddo
+         endif
 
 c        write (iout,* )"min_odl",min_odl
 #ifdef DEBUG