X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;f=source%2Funres%2Fdata%2Fenergy_data.F90;h=07e7d731d0b9d50a812cd5992fd0a636680276d2;hb=3d3780d89d2885ee8700324ef832ef07ee35c45b;hp=8bfb4dd4769b9bb58eb64cbc66feca175231b0be;hpb=6cf6ae414cef89216a4560b79b1a2c9c9ba18450;p=unres4.git

diff --git a/source/unres/data/energy_data.F90 b/source/unres/data/energy_data.F90
index 8bfb4dd..07e7d73 100644
--- a/source/unres/data/energy_data.F90
+++ b/source/unres/data/energy_data.F90
@@ -73,7 +73,7 @@
        wturn6,wvdwpp,wliptran,wshield,lipscale,wtube, &
        wbond_nucl,wang_nucl,wcorr_nucl,wcorr3_nucl,welpp,wtor_nucl,&
        wtor_d_nucl,welsb,wsbloc,wvdwsb,welpsb,wvdwpp_nucl,wvdwpsb,wcatprot,&
-       wcatcat,wscbase,wpepbase,wscpho,wpeppho,wdihc
+       wcatcat,wscbase,wpepbase,wscpho,wpeppho,wdihc,wcatnucl
 #ifdef CLUSTER
       real(kind=8) :: scalscp
 #endif
@@ -364,6 +364,8 @@
        real(kind=8) :: distafminit,forceAFMconst,velAFMconst
       integer :: afmend,afmbeg
       real(kind=8),dimension(:,:), allocatable :: catprm
+      real(kind=8),dimension(:,:,:), allocatable :: catnuclprm
+
 
          real(kind=8),dimension(:,:), allocatable ::  eps_scbase, &
         sigma_scbase,                         &
@@ -404,22 +406,63 @@
 !           sigmap2cat,wquadcat,chicat,chiscat,chippcat,&
 !           epsintabcat,debaykapcat
         integer,dimension(:),allocatable :: ichargecat
-        integer oldion
+!        integer oldion
 
         real(kind=8),dimension(:,:),allocatable :: alphapolcat,&
-           epsheadcat,sig0headcat,sigiso1cat,sigiso2cat,rborncat,&
-           sigmap1cat,sigmap2cat,chiscat,wquadcat,chippcat,&
-           epsintabcat,debaykapcat,chicat,sigmacat, nstatecat, epscat
+           epsheadcat,sig0headcat,sigiso1cat,sigiso2cat,rborn1cat,rborn2cat,&
+           sigmap1cat,sigmap2cat,chis1cat,chis2cat,wquadcat,chipp1cat,chipp2cat,&
+           epsintabcat,debaykapcat,chi1cat,chi2cat,sigmacat, nstatecat, epscat,&
+           aa_aq_cat,bb_aq_cat
 
         real(kind=8),dimension(:,:,:),allocatable :: alphasurcat,&
            alphisocat,wqdipcat,dtailcat,wstatecat
          real(kind=8),dimension(:,:,:,:),allocatable :: dheadcat
-
+          integer,dimension(60000) :: contlistscpi_f,contlistscpj_f
+!         integer :: ifirstrun,ilist_scp_first
 !        real(kind=8),dimension(:,:),allocatable :: alphapol,epshead,&
 !           sig0head,sigiso1,sigiso2,rborn,sigmap1,sigmap2,chis,wquad,chipp,&
 !           epsintab,debaykap
 
 
 !end of ions parameters by Agnieszka Lipska (Ca, K, Na, Mg, Cl)-----------------------
-
+!
+! FRAGMENT FOR INTERACTION LIST
+        integer,dimension(:),allocatable :: newcontlistppi,newcontlistppj,&
+        newcontlisti,newcontlistj,  newcontlistscpi,newcontlistscpj
+        integer :: g_listpp_start,g_listpp_end,g_listscp_start,g_listscp_end,&
+        g_listscsc_start,g_listscsc_end  
+!homology
+      integer ::  inprint,npermut,&
+       tubelog,constr_homology,homol_nset
+      logical :: mremd_dec,out_cart,&
+       out_int,gmatout,&
+       with_dihed_constr,read2sigma,start_from_model,read_homol_frag,&
+       out_template_coord,out_template_restr,loc_qlike,adaptive
+      real(kind=8) :: aincr,waga_dist,waga_angle,waga_theta,&
+       waga_d,dist2_cut
+      real(kind=8),dimension(:),allocatable :: waga_homology
+      real(kind=8),dimension(:,:),allocatable :: odl,&
+       sigma_odl,dih,sigma_dih, sigma_odlir, xxtpl,&
+       yytpl,zztpl,thetatpl,sigma_theta,sigma_d
+      integer,dimension(:),allocatable :: ires_homo,jres_homo
+      integer,dimension(:,:),allocatable :: idomain,tabpermchain,iequiv,&
+                  chain_border,chain_border1
+      integer :: lim_odl,lim_dih,link_start_homo,&
+       link_end_homo,idihconstr_start_homo,idihconstr_end_homo
+      logical,dimension(:,:),allocatable :: l_homo
+      integer ::nchain,iprzes,&
+        npermchain,&
+        nchain_group,&
+        nmodel_start,nran_start
+!      real(kind=8),dimension(:,:),allocatable :: c,dc,dc_old,xloc,xrot,&
+!                 dc_norm,dc_norm2,cref,crefjlee
+!      real(kind=8),dimension(:),allocatable :: d_c_work
+      real(kind=8),dimension(:,:,:),allocatable :: chomo
+!      real(kind=8) :: totTafm
+      character(len=256),dimension(:),allocatable:: pdbfiles_chomo
+      integer,dimension(:),allocatable :: chain_length,ireschain,&
+       nequiv,mapchain, nres_chomo
+      real(kind=8) :: enecut,sscut,sss,sssgrad
+!       buflipbot, bufliptop,bordlipbot,bordliptop,lipbufthick,lipthick
+!      real(kind=8) :: buftubebot, buftubetop,bordtubebot,bordtubetop,tubebufthick
       end module energy_data