X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;f=django_simple%2Ftodo%2Fviews.py;h=f545f1e286f0bd164532a56e926277c2d25ee096;hb=53f1728daa2b4d8d67349c048822ccd04e819d48;hp=4ffb0e73f59f2705f09fa5897ed693d1c6c91fd9;hpb=00fcf7b84f8d27f314f1e5a6296e402ec6252bc1;p=django_unres.git

diff --git a/django_simple/todo/views.py b/django_simple/todo/views.py
index 4ffb0e7..f545f1e 100644
--- a/django_simple/todo/views.py
+++ b/django_simple/todo/views.py
@@ -58,11 +58,13 @@ def from_pdb(file):
                 sequence.append(aa)
                 ires.append(i)
                 if newchain:
-                 chain_start[chain[ichain]]=i
+                 if len(chain)>0:
+                  chain_start[chain[ichain]]=i
                  newchain = False
             if line[0:3] == 'TER':
               sequence.append('XX')
-              chain_end[chain[ichain]]=i
+              if len(chain)>0:
+               chain_end[chain[ichain]]=i
               ichain=ichain+1
               newchain = True
             if line[0:6] == 'SSBOND':
@@ -98,7 +100,7 @@ def from_pdb(file):
 @login_required
 def index(request):
     user = request.user
-    tasks = Task.objects.filter(owner=user)
+    tasks = Task.objects.filter(owner=user).order_by('-created_date')
     variable = ''
     return render(request, "index.html", {
             'tasks': tasks
@@ -406,7 +408,7 @@ def delete(request, task_id):
 @login_required
 def refresh_done(request):
     user = request.user
-    tasks = Task.objects.filter(owner=user)
+    tasks = Task.objects.filter(owner=user).order_by('-created_date')
     for task in tasks:
       if os.path.isfile(task.jobdirname+'/finished') and not task.done:
          task.done=True
@@ -451,6 +453,7 @@ def refresh_done(request):
          if task.md_pdbref and task.type=='remd':
          
           for i in range(1,6):
+           try:
             with open(task.jobdirname+'/file_wham_T'+str(int(task.remd_cluter_temp))+'K_000'+str(i)+'.pdb', 'r') as f:
                  line=f.readline()
                  if i==1:
@@ -463,7 +466,8 @@ def refresh_done(request):
                      task.remd_model4=' '.join(line.split()[-6:])
                  elif i==5:
                      task.remd_model5=' '.join(line.split()[-6:])
-
+           except EnvironmentError:
+            print 'file_wham_T*pdb open error'
           for i in range(1,6):
             with open(task.jobdirname+'/tmscore'+str(i)+'.out', 'r') as f:
                text=''