X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;f=django_simple%2Ftodo%2Ftemplates%2Ftutorial.html;h=6e9bbdee3dd3f6f475e69a1c6bcd13c9aa293260;hb=f40d8151edf0064bda3db89298dbcf243d244c7f;hp=35b8dba122f2b7e659b0220d8529f1785835ef1b;hpb=0f5d683edc824468ab5da53d015b39e91fe2766d;p=django_unres.git diff --git a/django_simple/todo/templates/tutorial.html b/django_simple/todo/templates/tutorial.html index 35b8dba..6e9bbde 100644 --- a/django_simple/todo/templates/tutorial.html +++ b/django_simple/todo/templates/tutorial.html @@ -7,13 +7,14 @@ In order to submit a job you need to provide its name:
-
+
UNRES server allows three types of simulations: -local minimization, molecular dynamics, replica exchange molecular dynamics: +local minimization, molecular dynamics and replica exchange molecular dynamics:
Use "Save & submit" button to start calculations.
+
Use "Refresh" button to check the status of simulation:
@@ -22,10 +23,17 @@ Use "Refresh" button to check the status of simulation:
until
- - -
+Any single job can by accessed later using the adress of the web page
+displayed after job submission:
+http://unres-server.chem.ug.edu.pl/details1/570cf15fc638493893ece1f011ea0182/984/
+
+Registered users can save all their jobs and access them after login.
+
+
Evolution of RMSD, fraction of native contacts and comparison of CA fluctuations to Bfactor is presented -only when reference structure is provided as in this case. +only when reference structure is provided as in this example.
Finally cluster analysis is performed to select 5 families of conformations, and representative model from each family is converted to all-atom -and refined. +and refined. PDB files can be downloaded by clicking on the picture.
@@ -125,15 +138,69 @@ dissulfide bonds, MD simulations of 1L2Y starting from extended chain
and replica exchange simulations of 1E0G starting form extended chain
using new UNRES force field and Berendsen thermostat.
+