X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;f=django_simple%2Ftodo%2Ftemplates%2Fabout.html;h=5971555f8be22733bad5e7b03c8b97252ba1cb2e;hb=cb84afb9777fdb35d0e4139ddbb9dcb600814653;hp=bb20adbaef15fc1e5bdfd99e08426804ab42273c;hpb=a61f63a845b6791cfb39cbedfcb2c8df5e138950;p=django_unres.git
diff --git a/django_simple/todo/templates/about.html b/django_simple/todo/templates/about.html
index bb20adb..5971555 100644
--- a/django_simple/todo/templates/about.html
+++ b/django_simple/todo/templates/about.html
@@ -39,7 +39,7 @@ folds of fragments with 50-200 residues in length.
Selected references:
-
-C. Czaplewski, A. KarczyÅska, A.K. Sieradzan, A. Liwo.
+C. Czaplewski, A. KarczyÅska, A.K. Sieradzan, A. Liwo.
UNRES server for physics-based coarse-grained simulations and prediction of
protein structure, dynamics and thermodynamics.
Nucleic Acids Res. 2018, 46. W304-W309.
@@ -48,14 +48,14 @@ protein structure, dynamics and thermodynamics.
-
A. Liwo, C. Czaplewski, S. Oldziej, A.V. Rojas, R. Kazmierkiewicz, M.
-Makowski, R.K. Murarka, H.A. Scheraga.
Simulation of protein structure and
+Makowski, R.K. Murarka, H.A. Scheraga. Simulation of protein structure and
dynamics with the coarse-grained UNRES force field.
In: Coarse-Graining of
Condensed Phase and Biomolecular Systems., ed. G. Voth, Taylor & Francis,
2008, Chapter 8, pp. 107-122
-
-Y. He, Y. Xiao, A. Liwo, H.A. Scheraga.
Exploring the parameter space of the
+Y. He, Y. Xiao, A. Liwo, H.A. Scheraga. Exploring the parameter space of the
coarse-grained UNRES force field by random search: selecting a transferable
medium-resolution force field.
J. Comput. Chem. 2009, 30, 2127-2135.
@@ -63,7 +63,7 @@ medium-resolution force field.
-
A. Liwo, S. OÅdziej, C. Czaplewski, D. Kleinerman, P. Blood and H.A.
-Scheraga.
Implementation of molecular dynamics and its extensions with the
+Scheraga. Implementation of molecular dynamics and its extensions with the
coarse-grained UNRES force field on massively parallel systems; towards
millisecond-scale simulations of protein structure, dynamics, and
thermodynamics.
J. Chem. Theory Comput. 2010, 6, 890-909.
@@ -73,14 +73,14 @@ thermodynamics.
J. Chem. Theory Comput. 2010, 6, 890-909.
A. Liwo, M. Baranowski, C. Czaplewski, E. GoÅaÅ, Y. He, D. JagieÅa,
P. Krupa, M. Maciejczyk, M. Makowski, M.A. Mozolewska, A. Niadzvedtski,
S. OÅdziej, H.A. Scheraga, A.K. Sieradzan, R. Ålusarz, T. Wirecki, Y. Yin,
-B. Zaborowski.
+B. Zaborowski.
A unified coarse-grained model of biological macromolecules based on
mean-field multipole-multipole interactions.
J. Mol. Model. 2014, 20, 1-15.
-
-A.K. Sieradzan, P. Krupa, H.A. Scheraga, A. Liwo, C. Czaplewski.
+A.K. Sieradzan, P. Krupa, H.A. Scheraga, A. Liwo, C. Czaplewski.
Physics-based potentials for the coupling between backbone- and
side-chain-local conformational states in the United Residue (UNRES) force
field for protein simulations.
@@ -88,7 +88,7 @@ field for protein simulations.
-
-P. Krupa, A. HaÅabis, W. Å»mudziÅska, S. OÅdziej, H.A. Scheraga, A. Liwo.
+P. Krupa, A. HaÅabis, W. Å»mudziÅska, S. OÅdziej, H.A. Scheraga, A. Liwo.
Maximum Likelihood Calibration of the UNRES Force Field for Simulation of
Protein Structure and Dynamics.
J. Chem. Inf. Model. 2017, 57, 2364â2377.
@@ -96,7 +96,7 @@ Protein Structure and Dynamics.
-
A. KarczyÅska, M.A. Mozolewska, P. Krupa, A. GieÅdoÅ, A. Liwo, C.
-Czaplewski.
Prediction of protein structure with the coarse-grained UNRES
+Czaplewski. Prediction of protein structure with the coarse-grained UNRES
force field assisted by small X-ray scattering data and knowledge-based
information.
Proteins: Struct. Funct. Bioinf. 2018, 86, 228-239.
@@ -104,7 +104,7 @@ information.
-
A. Liwo, A.K. Sieradzan, A.G. Lipska, C. Czaplewski, I.
-Joung, W. Å»mudziÅska, A. HaÅabis, S. OÅdziej.
+Joung, W. Å»mudziÅska, A. HaÅabis, S. OÅdziej.
A general method for the derivation of the functional forms of the effective
energy terms in coarse-grained energy functions of polymers. III.
Determination of scale-consistent backbone-local and correlation potentials
@@ -115,7 +115,7 @@ in the UNRES force field and force-field calibration and validation.
-
E.A. Lubecka, A.S. KarczyÅska, A.G. Lipska, A.K.Sieradzan, K. ZiÄba, C. Sikorska,
U. Uciechowska, S.A. Samsonov, P. Krupa, M.A. Mozolewska, Å. Golon, A. GieÅdoÅ,
-C. Czaplewski, R. Ålusarz, M. Ålusarz, S.N. Crivelli, A. Liwo.
+C. Czaplewski, R. Ålusarz, M. Ålusarz, S.N. Crivelli, A. Liwo.
Evaluation of the scale-consistent UNRES force field in template-free
prediction of protein structures in the CASP13 experiment.
J. Mol. Graph. Model. 2019, 92, 154-166.
@@ -151,6 +151,7 @@ Third party software employed in the server
- pulchra
- Scwrl4
- tmscore
+
- DockQ