X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;f=django_simple%2Ftodo%2Ftemplates%2Fabout.html;h=5971555f8be22733bad5e7b03c8b97252ba1cb2e;hb=cb84afb9777fdb35d0e4139ddbb9dcb600814653;hp=a1916c03fdfee36ec114f42f411d5bfd3dd91803;hpb=d03bf58e6dc3d690486f8eb7a8f18ad34938c71f;p=django_unres.git
diff --git a/django_simple/todo/templates/about.html b/django_simple/todo/templates/about.html
index a1916c0..5971555 100644
--- a/django_simple/todo/templates/about.html
+++ b/django_simple/todo/templates/about.html
@@ -39,17 +39,17 @@ folds of fragments with 50-200 residues in length.
Selected references:
-
-C. Czaplewski, A. KarczyÅska, A.K. Sieradzan, A. Liwo,
+C. Czaplewski, A. KarczyÅska, A.K. Sieradzan, A. Liwo.
UNRES server for physics-based coarse-grained simulations and prediction of
-protein structure, dynamics and thermodynamics.
+protein structure, dynamics and thermodynamics.
Nucleic Acids Res. 2018, 46. W304-W309.
-gky328
+doi:10.1093/nar/gky328
-
A. Liwo, C. Czaplewski, S. Oldziej, A.V. Rojas, R. Kazmierkiewicz, M.
Makowski, R.K. Murarka, H.A. Scheraga. Simulation of protein structure and
-dynamics with the coarse-grained UNRES force field. In: Coarse-Graining of
+dynamics with the coarse-grained UNRES force field.
In: Coarse-Graining of
Condensed Phase and Biomolecular Systems., ed. G. Voth, Taylor & Francis,
2008, Chapter 8, pp. 107-122
@@ -57,7 +57,7 @@ Condensed Phase and Biomolecular Systems., ed. G. Voth, Taylor & Francis,
-
Y. He, Y. Xiao, A. Liwo, H.A. Scheraga. Exploring the parameter space of the
coarse-grained UNRES force field by random search: selecting a transferable
-medium-resolution force field.
+medium-resolution force field.
J. Comput. Chem. 2009, 30, 2127-2135.
@@ -66,7 +66,7 @@ A. Liwo, S. OÅdziej, C. Czaplewski, D. Kleinerman, P. Blood and H.A.
Scheraga. Implementation of molecular dynamics and its extensions with the
coarse-grained UNRES force field on massively parallel systems; towards
millisecond-scale simulations of protein structure, dynamics, and
-thermodynamics. J. Chem. Theory Comput. 2010, 6, 890-909.
+thermodynamics.
J. Chem. Theory Comput. 2010, 6, 890-909.
-
@@ -75,7 +75,7 @@ P. Krupa, M. Maciejczyk, M. Makowski, M.A. Mozolewska, A. Niadzvedtski,
S. OÅdziej, H.A. Scheraga, A.K. Sieradzan, R. Ålusarz, T. Wirecki, Y. Yin,
B. Zaborowski.
A unified coarse-grained model of biological macromolecules based on
-mean-field multipole-multipole interactions
+mean-field multipole-multipole interactions.
J. Mol. Model. 2014, 20, 1-15.
@@ -83,22 +83,22 @@ mean-field multipole-multipole interactions
A.K. Sieradzan, P. Krupa, H.A. Scheraga, A. Liwo, C. Czaplewski.
Physics-based potentials for the coupling between backbone- and
side-chain-local conformational states in the United Residue (UNRES) force
-field for protein simulations.
+field for protein simulations.
J. Chem. Theory. Comput. 2015, 11, 817-831.
-
P. Krupa, A. HaÅabis, W. Å»mudziÅska, S. OÅdziej, H.A. Scheraga, A. Liwo.
Maximum Likelihood Calibration of the UNRES Force Field for Simulation of
-Protein Structure and Dynamics.
+Protein Structure and Dynamics.
J. Chem. Inf. Model. 2017, 57, 2364â2377.
-
A. KarczyÅska, M.A. Mozolewska, P. Krupa, A. GieÅdoÅ, A. Liwo, C.
-Czaplewski.Prediction of protein structure with the coarse-grained UNRES
+Czaplewski. Prediction of protein structure with the coarse-grained UNRES
force field assisted by small X-ray scattering data and knowledge-based
-information.
+information.
Proteins: Struct. Funct. Bioinf. 2018, 86, 228-239.
@@ -108,16 +108,16 @@ Joung, W. Å»mudziÅska, A. HaÅabis, S. OÅdziej.
A general method for the derivation of the functional forms of the effective
energy terms in coarse-grained energy functions of polymers. III.
Determination of scale-consistent backbone-local and correlation potentials
-in the UNRES force field and force-field calibration and validation.
+in the UNRES force field and force-field calibration and validation.
J. Chem. Phys. 2019, 150, 155104.
-
E.A. Lubecka, A.S. KarczyÅska, A.G. Lipska, A.K.Sieradzan, K. ZiÄba, C. Sikorska,
U. Uciechowska, S.A. Samsonov, P. Krupa, M.A. Mozolewska, Å. Golon, A. GieÅdoÅ,
-C. Czaplewski, R. Ålusarz, M. Ålusarz, S.N. Crivelli, A. Liwo
+C. Czaplewski, R. Ålusarz, M. Ålusarz, S.N. Crivelli, A. Liwo.
Evaluation of the scale-consistent UNRES force field in template-free
-prediction of protein structures in the CASP13 experiment.
+prediction of protein structures in the CASP13 experiment.
J. Mol. Graph. Model. 2019, 92, 154-166.
@@ -151,6 +151,7 @@ Third party software employed in the server
- pulchra
- Scwrl4
- tmscore
+
- DockQ