X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;f=TODO;h=657c019ab0ffe6ee4f03fe415bef410f6f240498;hb=51ff99e169ac014cb869c39f170ed05e5992f2b0;hp=62d6774989a1c0ccea291074c723455e373e41f2;hpb=7f823f8c046ffa2149898c0b0f690ae4ac1c6528;p=django_unres.git

diff --git a/TODO b/TODO
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+++ b/TODO
@@ -1,15 +1,76 @@
+clean code and combine piasek and etoh versions 
+
+make easy install on any system with pbs
+
 add javascript instead of separate forms
+
+# option of automatic download file from PDB using id
+# done
+
 check input pdb for: 
 	unknown residues, 
 	max length (1000), 
 	max number of dissulfides (30),
 	etc,
         and display error
-check input for other errors (sequence. ?)
+
+check input for other errors (sequence ?)
+
 add web viewer NGL WebGL
+
+# add BOXX BOXY BOXZ in advanced md and mremd
+# done
+
 dynamic dissulfides input - all and selected cys
-homology restraints
-MREMD - add cluster parameters, change after run and rerun analysis
+
+homology restraints input
+
+other restrains input
+
+automatic secondary structure restrains (psipred)
+
+MREMD - add cluster parameters, change after run and rerun only cluster analysis
       - button to make movie from selected trajectory after run
-examples+gallery
-documentation
\ No newline at end of file
+
+# examples
+# done
+
+gallery
+
+documentation
+
+automatic rm of old jobs ?
+
+### NAR requirements:
+
+include a simple mechanism to try out sample data provided by the authors,
+for example, a button for automatic loading of the data. Sample data must be
+accessible to users so that they can confirm data formatting requirements
+# OK
+
+contain help pages or a tutorial with links to sample output that performs
+interactively in the same way as real output. The help pages must include
+information on how to interpret the results returned by the web server
+# ?
+
+# be primarily web-based and viewable on the website. Use of browser plugins
+# for data visualization is encouraged. However, use of Flash plugins is
+# discouraged due to security issues and websites that use Java plugins will
+# no longer be accepted
+# OK
+
+# provide a web link to the results if the website is not able to return
+# results immediately. The link should be provided at the time of data
+# submission and allow the user to bookmark and access the results at a later
+# time. Ideally, the link will report the status of the job (queued, running,
+# or finished). Do not assume that users will provide an email address for
+# results notification. Any request for an email must state that it is
+# optional. Websites that use a guest login will not be approved
+#
+# OK link uses task.id and user.id
+# http://ha1.chem.univ.gda.pl:8001/details1/19da81cb0ad5492dac8e4eaefd28949e/942/
+
+# keep every user’s submitted data private and not viewable by anyone other
+# than the user or those given permission by the user
+#
+# OK - additionaly blocks links of regular user without login