X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;f=TODO;h=3e9840641535bed4e5bb59bc2b38ab234aa6654a;hb=03c96699333f5c45ba11d3e1da84b4f471e52ace;hp=ec7412ca535d6974cf0cdf46bb8985bf809d19ba;hpb=166d4a8f96da8335d5aa478331d09411ae78363f;p=django_unres.git

diff --git a/TODO b/TODO
index ec7412c..3e98406 100644
--- a/TODO
+++ b/TODO
@@ -1,21 +1,86 @@
 clean code and combine piasek and etoh versions 
+
 make easy install on any system with pbs
+
 add javascript instead of separate forms
-automatic download file from PDB using id
+
+# option of automatic download file from PDB using id
+# done
+
 check input pdb for: 
-	unknown residues, 
+#        missing residues (chain breaks) - done
+#	unknown residues - done
 	max length (1000), 
 	max number of dissulfides (30),
 	etc,
         and display error
+
 check input for other errors (sequence ?)
-add web viewer NGL WebGL
-add BOXX BOXY BOXZ in advanced md and mremd
+
+# add web viewer NGL WebGL
+# done
+
+# add BOXX BOXY BOXZ in advanced md and mremd
+# done
+
 dynamic dissulfides input - all and selected cys
+
 homology restraints input
-other restrains input
+
+# secondary structure restraints
+# done
+
+other restraints input
+
+# SAXS input
+# done
+
+automatic secondary structure restrains (psipred)
+
 MREMD - add cluster parameters, change after run and rerun only cluster analysis
       - button to make movie from selected trajectory after run
-examples+gallery
+
+# examples
+# done
+
+gallery
+
 documentation
-automatic rm of old jobs ?
\ No newline at end of file
+
+automatic rm of old jobs ?
+
+### NAR requirements:
+
+# include a simple mechanism to try out sample data provided by the authors,
+# for example, a button for automatic loading of the data. Sample data must be
+# accessible to users so that they can confirm data formatting requirements
+# OK
+
+# contain help pages or a tutorial with links to sample output that performs
+# interactively in the same way as real output. The help pages must include
+# information on how to interpret the results returned by the web server
+# OK
+
+# be primarily web-based and viewable on the website. Use of browser plugins
+# for data visualization is encouraged. However, use of Flash plugins is
+# discouraged due to security issues and websites that use Java plugins will
+# no longer be accepted
+# OK
+
+# provide a web link to the results if the website is not able to return
+# results immediately. The link should be provided at the time of data
+# submission and allow the user to bookmark and access the results at a later
+# time. Ideally, the link will report the status of the job (queued, running,
+# or finished). Do not assume that users will provide an email address for
+# results notification. Any request for an email must state that it is
+# optional. Websites that use a guest login will not be approved
+#
+# OK link uses task.id and user.id
+# http://ha1.chem.univ.gda.pl:8001/details1/19da81cb0ad5492dac8e4eaefd28949e/942/
+
+links are not save - lazy user can read other lazy users jobs ?
+
+# keep every user’s submitted data private and not viewable by anyone other
+# than the user or those given permission by the user
+#
+# OK - additionaly blocks links of regular user without login