X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;ds=sidebyside;f=django_simple%2Ftodo%2Ftemplates%2Fabout.html;h=5971555f8be22733bad5e7b03c8b97252ba1cb2e;hb=1b9e4cd5192fafe2213b582fadd19556fb2ecf3a;hp=62d24d9f69a6410727915b35977d6cab52123a1a;hpb=cb36b6c35942e63325f33948c429d3ca77c85306;p=django_unres.git
diff --git a/django_simple/todo/templates/about.html b/django_simple/todo/templates/about.html
index 62d24d9..5971555 100644
--- a/django_simple/todo/templates/about.html
+++ b/django_simple/todo/templates/about.html
@@ -38,11 +38,18 @@ folds of fragments with 50-200 residues in length.
Selected references:
+-
+C. Czaplewski, A. KarczyÅska, A.K. Sieradzan, A. Liwo.
+UNRES server for physics-based coarse-grained simulations and prediction of
+protein structure, dynamics and thermodynamics.
+ Nucleic Acids Res. 2018, 46. W304-W309.
+doi:10.1093/nar/gky328
+
-
A. Liwo, C. Czaplewski, S. Oldziej, A.V. Rojas, R. Kazmierkiewicz, M.
Makowski, R.K. Murarka, H.A. Scheraga. Simulation of protein structure and
-dynamics with the coarse-grained UNRES force field. In: Coarse-Graining of
+dynamics with the coarse-grained UNRES force field.
In: Coarse-Graining of
Condensed Phase and Biomolecular Systems., ed. G. Voth, Taylor & Francis,
2008, Chapter 8, pp. 107-122
@@ -50,7 +57,7 @@ Condensed Phase and Biomolecular Systems., ed. G. Voth, Taylor & Francis,
-
Y. He, Y. Xiao, A. Liwo, H.A. Scheraga. Exploring the parameter space of the
coarse-grained UNRES force field by random search: selecting a transferable
-medium-resolution force field.
+medium-resolution force field.
J. Comput. Chem. 2009, 30, 2127-2135.
@@ -59,7 +66,7 @@ A. Liwo, S. OÅdziej, C. Czaplewski, D. Kleinerman, P. Blood and H.A.
Scheraga. Implementation of molecular dynamics and its extensions with the
coarse-grained UNRES force field on massively parallel systems; towards
millisecond-scale simulations of protein structure, dynamics, and
-thermodynamics. J. Chem. Theory Comput. 2010, 6, 890-909.
+thermodynamics.
J. Chem. Theory Comput. 2010, 6, 890-909.
-
@@ -68,7 +75,7 @@ P. Krupa, M. Maciejczyk, M. Makowski, M.A. Mozolewska, A. Niadzvedtski,
S. OÅdziej, H.A. Scheraga, A.K. Sieradzan, R. Ålusarz, T. Wirecki, Y. Yin,
B. Zaborowski.
A unified coarse-grained model of biological macromolecules based on
-mean-field multipole-multipole interactions
+mean-field multipole-multipole interactions.
J. Mol. Model. 2014, 20, 1-15.
@@ -76,23 +83,42 @@ mean-field multipole-multipole interactions
A.K. Sieradzan, P. Krupa, H.A. Scheraga, A. Liwo, C. Czaplewski.
Physics-based potentials for the coupling between backbone- and
side-chain-local conformational states in the United Residue (UNRES) force
-field for protein simulations.
+field for protein simulations.
J. Chem. Theory. Comput. 2015, 11, 817-831.
-
P. Krupa, A. HaÅabis, W. Å»mudziÅska, S. OÅdziej, H.A. Scheraga, A. Liwo.
Maximum Likelihood Calibration of the UNRES Force Field for Simulation of
-Protein Structure and Dynamics.
+Protein Structure and Dynamics.
J. Chem. Inf. Model. 2017, 57, 2364â2377.
-
A. KarczyÅska, M.A. Mozolewska, P. Krupa, A. GieÅdoÅ, A. Liwo, C.
-Czaplewski.Prediction of protein structure with the coarse-grained UNRES
+Czaplewski. Prediction of protein structure with the coarse-grained UNRES
force field assisted by small X-ray scattering data and knowledge-based
-information.
-Proteins: Struct. Funct. Bioinf. 2017, CASP12 special issue DOI: 10.1002/prot.25421
+information.
+Proteins: Struct. Funct. Bioinf. 2018, 86, 228-239.
+
+
+-
+A. Liwo, A.K. Sieradzan, A.G. Lipska, C. Czaplewski, I.
+Joung, W. Å»mudziÅska, A. HaÅabis, S. OÅdziej.
+A general method for the derivation of the functional forms of the effective
+energy terms in coarse-grained energy functions of polymers. III.
+Determination of scale-consistent backbone-local and correlation potentials
+in the UNRES force field and force-field calibration and validation.
+J. Chem. Phys. 2019, 150, 155104.
+
+
+-
+E.A. Lubecka, A.S. KarczyÅska, A.G. Lipska, A.K.Sieradzan, K. ZiÄba, C. Sikorska,
+U. Uciechowska, S.A. Samsonov, P. Krupa, M.A. Mozolewska, Å. Golon, A. GieÅdoÅ,
+C. Czaplewski, R. Ålusarz, M. Ålusarz, S.N. Crivelli, A. Liwo.
+Evaluation of the scale-consistent UNRES force field in template-free
+prediction of protein structures in the CASP13 experiment.
+J. Mol. Graph. Model. 2019, 92, 154-166.
@@ -118,12 +144,14 @@ License terms of UNRES package implemented in the server
Third party software employed in the server