X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;ds=inline;f=django_simple%2Ftodo%2Ftemplates%2Ftutorial.html;h=5382ac7272b4b477d99725fdaab02856512377cc;hb=cb84afb9777fdb35d0e4139ddbb9dcb600814653;hp=e2719412fce6e4bcbe5f330d6081b6f2192caf56;hpb=03c96699333f5c45ba11d3e1da84b4f471e52ace;p=django_unres.git
diff --git a/django_simple/todo/templates/tutorial.html b/django_simple/todo/templates/tutorial.html
index e271941..5382ac7 100644
--- a/django_simple/todo/templates/tutorial.html
+++ b/django_simple/todo/templates/tutorial.html
@@ -8,30 +8,39 @@ In order to submit a job you need to provide its name:
-UNRES server allows three types of simulations:
+The following three types of simulations can be run with the UNRES server:
local minimization, molecular dynamics and replica exchange molecular dynamics:
-Use "Save & submit" button to start calculations.
+Use the "Save & submit" button to start calculations.
-Use "Refresh" button to check the status of simulation:
+Use the "Refresh" button to check the status of a simulation:
until
-The job status information will start from the "waiting in the queue to
-start", then "running" and finally "postprocessing" before "done".
-Postprocessing do not count to 100%. Autorefresh is active every 30 sec.
-
-Any single job can by accessed later using the adress of the web page
-displayed after job submission:
+After the server job has been submitted the "waiting in the queue to
+start" message will be displayed in the status field, which will subsequently change
+to "running", "postprocessing", and "done". While the job has the "running"
+status, the percentage of job accomplishment is displayed.
+It should be noted that the "100%" accomplishment refers to the production
+phase of a job, after which the postprocessing phase is triggered which also takes
+some time (up to several minutes when making a movie from an MD trajectory is
+requested) and whose progress is not monitored. The page is autorefreshed every 30 sec.
+
+Any single job can by accessed later (for at least 14 days) using the address of the web page
+displayed after job submission: e.g.
http://unres-server.chem.ug.edu.pl/details1/570cf15fc638493893ece1f011ea0182/984/
-Registered users can save all their jobs and access them after login.
+Registered users can save all their jobs and access them later after logging in.
+Note that the results will be available for a limited period of time,
+depending on the storage space availability (at least 30 days).
+
+
You can use "Load example data" button before submitting calculations
to try examples listed below:
@@ -45,24 +54,25 @@ to try examples listed below:
-In this example only the PDB code of selected protein (1BDD) is provided
+In this example only the PDB code of the selected protein (1BDD) is input.
-The results of local minimizations show the UNRES model of 1BDD protein,
-its total UNRES energy and overlap on starting structure:
+After energy minimization is accomplished, the UNRES model of the protein,
+its total UNRES energy and superposition on starting structure are displayed.
+The interactive NGL Viewer is employed, which enables the users to manipulate the structure.
All files generated during calculations
-can be viewed/download by clicking on "Directory" link.
+can be viewed/download by clicking on the "Directory" link.
Molecular dynamics of IGG-binding domain from streptococcal protein G
-(PDB code:1IGD) starting from the native structure
+(PDB code:1IGD) starting from the experimental structure
-Replica exchange molecular dynamics of Trp-Cage miniprotein (PDB
+Replica exchange molecular dynamics of the Trp-Cage miniprotein (PDB
code:1L2Y) starting from the extended chain