X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=blobdiff_plain;ds=inline;f=django_simple%2Ftodo%2Ftemplates%2Fabout.html;h=f3d310370cd92cad8298b334e7aa3ccc141e3113;hb=f84bee65e9c8a2ce6a082e85160a5ccbabe76ebf;hp=72262dff2d08cda5a0d9b886f96afdb75bc91574;hpb=54cd6e1d5ddfde7997eaaacb3e83f4f09a4cbb16;p=django_unres.git

diff --git a/django_simple/todo/templates/about.html b/django_simple/todo/templates/about.html
index 72262df..f3d3103 100644
--- a/django_simple/todo/templates/about.html
+++ b/django_simple/todo/templates/about.html
@@ -38,11 +38,18 @@ folds of fragments with 50-200 residues in length.
 <p>
 Selected references:
 <ol>
+<li>
+C. Czaplewski, A. Karczyńska, A.K. Sieradzan, A. Liwo.
+UNRES server for physics-based coarse-grained simulations and prediction of
+protein structure, dynamics and thermodynamics.<br>
+<i> Nucleic Acids Res.</i> 2018, 46. W304-W309.
+<a href="https://doi.org/10.1093/nar/gky328">doi:10.1093/nar/gky328</a>
+</li>
 
 <li>
 A. Liwo, C. Czaplewski, S. Oldziej, A.V. Rojas, R. Kazmierkiewicz, M.
 Makowski, R.K. Murarka, H.A. Scheraga. Simulation of protein structure and
-dynamics with the coarse-grained UNRES force field. In: <i>Coarse-Graining of
+dynamics with the coarse-grained UNRES force field. <br>In: <i>Coarse-Graining of
 Condensed Phase and Biomolecular Systems.</i>, ed. G. Voth, Taylor & Francis,
 2008, Chapter 8, pp. 107-122
 </li>
@@ -50,7 +57,7 @@ Condensed Phase and Biomolecular Systems.</i>, ed. G. Voth, Taylor & Francis,
 <li>
 Y. He, Y. Xiao, A. Liwo, H.A. Scheraga. Exploring the parameter space of the
 coarse-grained UNRES force field by random search: selecting a transferable
-medium-resolution force field. 
+medium-resolution force field. <br>
 <i>J. Comput. Chem.</i> 2009, 30, 2127-2135.
 </li>
 
@@ -59,7 +66,7 @@ A. Liwo, S. Ołdziej, C. Czaplewski, D. Kleinerman, P. Blood and H.A.
 Scheraga. Implementation of molecular dynamics and its extensions with the
 coarse-grained UNRES force field on massively parallel systems; towards
 millisecond-scale simulations of protein structure, dynamics, and
-thermodynamics. <i>J. Chem. Theory Comput.<i> 2010, 6, 890-909.
+thermodynamics.<br> <i>J. Chem. Theory Comput.</i> 2010, 6, 890-909.
 </li>
 
 <li>
@@ -68,7 +75,7 @@ P. Krupa, M. Maciejczyk, M. Makowski, M.A. Mozolewska, A. Niadzvedtski,
 S. Ołdziej, H.A. Scheraga, A.K. Sieradzan, R. Ślusarz, T. Wirecki, Y. Yin, 
 B. Zaborowski.
 A unified coarse-grained model of biological macromolecules based on
-mean-field multipole-multipole interactions
+mean-field multipole-multipole interactions.<br>
 <i>J. Mol. Model.</i> 2014, 20, 1-15.
 </li>
 
@@ -76,23 +83,42 @@ mean-field multipole-multipole interactions
 A.K. Sieradzan, P. Krupa, H.A. Scheraga, A. Liwo, C. Czaplewski.
 Physics-based potentials for the coupling between backbone- and
 side-chain-local conformational states in the United Residue (UNRES) force
-field for protein simulations.
+field for protein simulations.<br>
 <i>J. Chem. Theory. Comput.</i> 2015, 11, 817-831.
 </li>
 
 <li>
 P. Krupa, A. Hałabis, W. Żmudzińska, S. Ołdziej, H.A. Scheraga, A. Liwo.
 Maximum Likelihood Calibration of the UNRES Force Field for Simulation of
-Protein Structure and Dynamics.
+Protein Structure and Dynamics.<br>
 <i>J. Chem. Inf. Model.</i> 2017, 57, 2364–2377.
 </li>
 
 <li>
 A. Karczyńska, M.A. Mozolewska, P. Krupa, A. Giełdoń, A. Liwo, C.
-Czaplewski.Prediction of protein structure with the coarse-grained UNRES
+Czaplewski. Prediction of protein structure with the coarse-grained UNRES
 force field assisted by small X-ray scattering data and knowledge-based
-information.
-<i>Proteins: Struct. Funct. Bioinf.</i> 2017, CASP12 special issue DOI: 10.1002/prot.25421
+information.<br>
+<i>Proteins: Struct. Funct. Bioinf.</i> 2018, 86, 228-239.
+</li>
+
+<li>
+A. Liwo, A.K. Sieradzan, A.G. Lipska, C. Czaplewski, I.
+Joung, W. Żmudzińska, A. Hałabis, S. Ołdziej.
+A general method for the derivation of the functional forms of the effective
+energy terms in coarse-grained energy functions of polymers. III.
+Determination of scale-consistent backbone-local and correlation potentials
+in the UNRES force field and force-field calibration and validation.<br>
+<i>J. Chem. Phys.</i> 2019, 150, 155104.
+</li>
+
+<li>
+E.A. Lubecka, A.S. Karczyńska, A.G. Lipska, A.K.Sieradzan, K. Zięba, C. Sikorska, 
+U. Uciechowska, S.A. Samsonov, P. Krupa, M.A. Mozolewska, Ł. Golon, A. Giełdoń,
+C. Czaplewski, R. Ślusarz, M. Ślusarz, S.N. Crivelli, A. Liwo.
+Evaluation of the scale-consistent UNRES force field in template-free
+prediction of protein structures in the CASP13 experiment.<br>
+<i>J. Mol. Graph. Model.</i> 2019, 92, 154-166.
 </li>
 
 </ol>