working side-chain phosphate
[unres4.git] / source / unres / io_config.f90
index 8e913d0..2d4a625 100644 (file)
        sc_bb_tube_par(i)=-sigeps*4.0d0*epssctube*sigmasctube
       write(iout,*) sc_aa_tube_par(i), sc_bb_tube_par(i),tubetranene(i)
       enddo
+!-----------------READING SC BASE POTENTIALS-----------------------------
+      allocate(eps_scbase(ntyp_molec(1),ntyp_molec(2)))      
+      allocate(sigma_scbase(ntyp_molec(1),ntyp_molec(2)))
+      allocate(chi_scbase(ntyp_molec(1),ntyp_molec(2),2))
+      allocate(chipp_scbase(ntyp_molec(1),ntyp_molec(2),2))
+      allocate(alphasur_scbase(4,ntyp_molec(1),ntyp_molec(2)))
+      allocate(sigmap1_scbase(ntyp_molec(1),ntyp_molec(2)))
+      allocate(sigmap2_scbase(ntyp_molec(1),ntyp_molec(2)))
+      allocate(chis_scbase(ntyp_molec(1),ntyp_molec(2),2))
+      allocate(dhead_scbasei(ntyp_molec(1),ntyp_molec(2)))
+      allocate(dhead_scbasej(ntyp_molec(1),ntyp_molec(2)))
+      allocate(rborn_scbasei(ntyp_molec(1),ntyp_molec(2)))
+      allocate(rborn_scbasej(ntyp_molec(1),ntyp_molec(2)))
+      allocate(wdipdip_scbase(3,ntyp_molec(1),ntyp_molec(2)))
+      allocate(wqdip_scbase(2,ntyp_molec(1),ntyp_molec(2)))
+      allocate(alphapol_scbase(ntyp_molec(1),ntyp_molec(2)))
+      allocate(epsintab_scbase(ntyp_molec(1),ntyp_molec(2)))
+
+
+      do i=1,ntyp_molec(1)
+       do j=1,ntyp_molec(2)-1 ! without U then we will take T for U
+        write (*,*) "Im in ", i, " ", j
+        read(isidep_scbase,*) &
+        eps_scbase(i,j),sigma_scbase(i,j),chi_scbase(i,j,1),&
+        chi_scbase(i,j,2),chipp_scbase(i,j,1),chipp_scbase(i,j,2)
+         write(*,*) "eps",eps_scbase(i,j)
+        read(isidep_scbase,*) &
+       (alphasur_scbase(k,i,j),k=1,4),sigmap1_scbase(i,j),sigmap2_scbase(i,j), &
+       chis_scbase(i,j,1),chis_scbase(i,j,2)
+        read(isidep_scbase,*) &
+       dhead_scbasei(i,j), &
+       dhead_scbasej(i,j), &
+       rborn_scbasei(i,j),rborn_scbasej(j,i)
+        read(isidep_scbase,*) &
+       (wdipdip_scbase(k,i,j),k=1,3), &
+       (wqdip_scbase(k,i,j),k=1,2)
+        read(isidep_scbase,*) &
+       alphapol_scbase(i,j), &
+       epsintab_scbase(i,j) 
+       END DO
+      END DO
+      allocate(aa_scbase(ntyp_molec(1),ntyp_molec(2)))
+      allocate(bb_scbase(ntyp_molec(1),ntyp_molec(2)))
+
+      do i=1,ntyp_molec(1)
+       do j=1,ntyp_molec(2)-1 
+          epsij=eps_scbase(i,j)
+          rrij=sigma_scbase(i,j)
+!          r0(i,j)=rrij
+!          r0(j,i)=rrij
+          rrij=rrij**expon
+!          epsij=eps(i,j)
+          sigeps=dsign(1.0D0,epsij)
+          epsij=dabs(epsij)
+          aa_scbase(i,j)=epsij*rrij*rrij
+          bb_scbase(i,j)=-sigeps*epsij*rrij
+        enddo
+       enddo
+!-----------------READING PEP BASE POTENTIALS-------------------
+      allocate(eps_pepbase(ntyp_molec(2)))
+      allocate(sigma_pepbase(ntyp_molec(2)))
+      allocate(chi_pepbase(ntyp_molec(2),2))
+      allocate(chipp_pepbase(ntyp_molec(2),2))
+      allocate(alphasur_pepbase(4,ntyp_molec(2)))
+      allocate(sigmap1_pepbase(ntyp_molec(2)))
+      allocate(sigmap2_pepbase(ntyp_molec(2)))
+      allocate(chis_pepbase(ntyp_molec(2),2))
+      allocate(wdipdip_pepbase(3,ntyp_molec(2)))
+
+
+       do j=1,ntyp_molec(2)-1 ! without U then we will take T for U
+        write (*,*) "Im in ", i, " ", j
+        read(isidep_pepbase,*) &
+        eps_pepbase(j),sigma_pepbase(j),chi_pepbase(j,1),&
+        chi_pepbase(j,2),chipp_pepbase(j,1),chipp_pepbase(j,2)
+         write(*,*) "eps",eps_pepbase(j)
+        read(isidep_pepbase,*) &
+       (alphasur_pepbase(k,j),k=1,4),sigmap1_pepbase(j),sigmap2_pepbase(j), &
+       chis_pepbase(j,1),chis_pepbase(j,2)
+        read(isidep_pepbase,*) &
+       (wdipdip_pepbase(k,j),k=1,3)
+       END DO
+      allocate(aa_pepbase(ntyp_molec(2)))
+      allocate(bb_pepbase(ntyp_molec(2)))
+
+       do j=1,ntyp_molec(2)-1
+          epsij=eps_pepbase(j)
+          rrij=sigma_pepbase(j)
+!          r0(i,j)=rrij
+!          r0(j,i)=rrij
+          rrij=rrij**expon
+!          epsij=eps(i,j)
+          sigeps=dsign(1.0D0,epsij)
+          epsij=dabs(epsij)
+          aa_pepbase(j)=epsij*rrij*rrij
+          bb_pepbase(j)=-sigeps*epsij*rrij
+        enddo
+!--------------READING SC PHOSPHATE------------------------------------- 
+      allocate(eps_scpho(ntyp_molec(1)))
+      allocate(sigma_scpho(ntyp_molec(1)))
+      allocate(chi_scpho(ntyp_molec(1),2))
+      allocate(chipp_scpho(ntyp_molec(1),2))
+      allocate(alphasur_scpho(4,ntyp_molec(1)))
+      allocate(sigmap1_scpho(ntyp_molec(1)))
+      allocate(sigmap2_scpho(ntyp_molec(1)))
+      allocate(chis_scpho(ntyp_molec(1),2))
+      allocate(wqq_scpho(ntyp_molec(1)))
+      allocate(wqdip_scpho(2,ntyp_molec(1)))
+      allocate(alphapol_scpho(ntyp_molec(1)))
+      allocate(epsintab_scpho(ntyp_molec(1)))
+      allocate(dhead_scphoi(ntyp_molec(1)))
+      allocate(rborn_scphoi(ntyp_molec(1)))
+      allocate(rborn_scphoj(ntyp_molec(1)))
+
+!      j=1
+       do j=1,ntyp_molec(1) ! without U then we will take T for U
+        write (*,*) "Im in scpho ", i, " ", j
+        read(isidep_scpho,*) &
+        eps_scpho(j),sigma_scpho(j),chi_scpho(j,1),&
+        chi_scpho(j,2),chipp_scpho(j,1),chipp_scpho(j,2)
+         write(*,*) "eps",eps_scpho(j)
+        read(isidep_scpho,*) &
+       (alphasur_scpho(k,j),k=1,4),sigmap1_scpho(j),sigmap2_scpho(j), &
+       chis_scpho(j,1),chis_scpho(j,2)
+        read(isidep_scpho,*) &
+       (wqdip_scpho(k,j),k=1,2),wqq_scpho(j),dhead_scphoi(j)
+        read(isidep_scpho,*) &
+         epsintab_scpho(j),alphapol_scpho(j),rborn_scphoi(j),rborn_scphoj(j)
+       
+       END DO
+      allocate(aa_scpho(ntyp_molec(1)))
+      allocate(bb_scpho(ntyp_molec(1)))
+
+       do j=1,ntyp_molec(1)
+          epsij=eps_scpho(j)
+          rrij=sigma_scpho(j)
+!          r0(i,j)=rrij
+!          r0(j,i)=rrij
+          rrij=rrij**expon
+!          epsij=eps(i,j)
+          sigeps=dsign(1.0D0,epsij)
+          epsij=dabs(epsij)
+          aa_scpho(j)=epsij*rrij*rrij
+          bb_scpho(j)=-sigeps*epsij*rrij
+        enddo
+
 
       allocate(aad(ntyp,2),bad(ntyp,2)) !(ntyp,2)
       bad(:,:)=0.0D0
       open (itordp_nucl,file=tordname_nucl,status='old',action='read')
       call getenv_loc('SIDEPAR_NUCL',sidename_nucl)
       open (isidep_nucl,file=sidename_nucl,status='old',action='read')
+      call getenv_loc('SIDEPAR_SCBASE',sidename_scbase)
+      open (isidep_scbase,file=sidename_scbase,status='old',action='read')
+      call getenv_loc('PEPPAR_PEPBASE',pepname_pepbase)
+      open (isidep_pepbase,file=pepname_pepbase,status='old',action='read')
+      call getenv_loc('SCPAR_PHOSPH',pepname_scpho)
+      open (isidep_scpho,file=pepname_scpho,status='old',action='read')
+
 
       call getenv_loc('LIPTRANPAR',liptranname)
       open (iliptranpar,file=liptranname,status='old',action='read')