enddo
enddo
endif
+
+
+
+ if (.not.allocated(ichargecat)) allocate (ichargecat(ntyp_molec(5)))
if (oldion.eq.1) then
do i=1,ntyp_molec(5)
- read(iion,*) msc(i,5),restok(i,5)
+ read(iion,*) msc(i,5),restok(i,5),ichargecat(i)
print *,msc(i,5),restok(i,5)
enddo
ip(5)=0.2
enddo
print *, catprm
endif
+ allocate(catnuclprm(14,ntyp_molec(2),ntyp_molec(5)))
+ do i=1,ntyp_molec(5)
+ do j=1,ntyp_molec(2)
+ write(iout,*) i,j
+ read(iionnucl,*) (catnuclprm(k,j,i),k=1,14)
+ enddo
+ enddo
+ write(*,'(3(5x,a6)11(7x,a6))') "w1 ","w2 ","epslj ","pis1 ", &
+ "sigma0","epsi0 ","chi1 ","chip1 ","sig ","b1 ","b2 ", &
+ "b3 ","b4 ","chis1 "
+ do i=1,ntyp_molec(5)
+ do j=1,ntyp_molec(2)
+ write(*,'(3(f10.3,x),11(f12.6,x),a3,2a)') (catnuclprm(k,j,i),k=1,14), &
+ restyp(i,5),"-",restyp(j,2)
+ enddo
+ enddo
! read (iion,*) (vcatprm(k),k=1,ncatprotpram)
!----------------------------------------------------
allocate(a0thet(-ntyp:ntyp),theta0(-ntyp:ntyp))
(alphasur(k,i,j),k=1,4),sigmap1(i,j),sigmap2(i,j), & !6 w tej linii
chis(i,j),chis(j,i) !2 w tej linii
endif
-! print *,eps(i,j),sigma(i,j),"SIGMAP",i,j,sigmap1(i,j),sigmap2(j,i)
+ print *,eps(i,j),sigma(i,j),"SIGMAP",i,j,sigmap1(i,j),sigmap2(j,i), wqdip(1,i,j)
END DO
END DO
do i=1,ntyp
if (.not.allocated(chi2cat)) allocate(chi2cat(ntyp1,ntyp1)) !(ntyp,ntyp)
- allocate (ichargecat(ntyp_molec(5)))
+ if (.not.allocated(ichargecat)) allocate (ichargecat(ntyp_molec(5)))
! i to SC, j to jon, isideocat - nazwa pliku z ktorego czytam parametry
if (oldion.eq.0) then
if (.not.allocated(icharge)) then ! this mean you are oprating in old sc-sc mode
print *,msc(i,5),restok(i,5)
enddo
ip(5)=0.2
-
- do i=1,ntyp
- do j=1,ntyp_molec(5)
+!DIR$ NOUNROLL
+ do j=1,ntyp_molec(5)
+ do i=1,ntyp
+! do j=1,ntyp_molec(5)
! write (*,*) "Im in ALAB", i, " ", j
read(iion,*) &
epscat(i,j),sigmacat(i,j), &
(wqdipcat(k,i,j),k=1,2), &
alphapolcat(i,j),alphapolcat(j,i), &
(alphisocat(k,i,j),k=1,4),sigiso1cat(i,j),sigiso2cat(i,j),epsintabcat(i,j),debaykapcat(i,j)
+
+ if (chi1cat(i,j).gt.0.9) write (*,*) "WTF ANISO", i,j, chi1cat(i,j)
! print *,eps(i,j),sigma(i,j),"SIGMAP",i,j,sigmap1(i,j),sigmap2(j,i)
! if (i.eq.1) then
! write (iout,*) 'i= ', i, ' j= ', j
do j=1,ntyp_molec(5)
epsij=epscat(i,j)
rrij=sigmacat(i,j)
+ rrij=rrij**expon
sigeps=dsign(1.0D0,epsij)
epsij=dabs(epsij)
aa_aq_cat(i,j)=epsij*rrij*rrij
do i=1,ntyp
do j=1,ntyp_molec(5)
- if (i.eq.1) then
+ if (i.eq.10) then
write (iout,*) 'i= ', i, ' j= ', j
write (iout,*) 'epsi0= ', epscat(i,j)
write (iout,*) 'sigma0= ', sigmacat(i,j)
write (iout,*) 'epsin= ', epsintabcat(1,j), epsintabcat(j,1)
write (iout,*) 'alphapol1= ', alphapolcat(1,j)
write (iout,*) 'alphapol2= ', alphapolcat(j,1)
- write (iout,*) 'w1= ', wqdipcat(1,1,j)
- write (iout,*) 'w2= ', wqdipcat(2,1,j)
+ write (iout,*) 'w1= ', wqdipcat(1,i,j)
+ write (iout,*) 'w2= ', wqdipcat(2,i,j)
write (iout,*) 'debaykapcat(i,j)= ', debaykapcat(1,j)
endif
istype(i)=istype_temp(i)
enddo
enddo
+ if ((itype(1,1).eq.ntyp1).and.itype(2,5).ne.0) then
+! I have only ions now dummy atoms in the system
+ molnum(1)=5
+ itype(1,5)=itype(2,5)
+ itype(1,1)=0
+ do i=2,nres
+ itype(i,5)=itype(i+1,5)
+ enddo
+ itype(nres,5)=0
+ nres=nres-1
+ nres_molec(1)=nres_molec(1)-1
+ endif
! if (itype(1,1).eq.ntyp1) then
! nsup=nsup-1
! nstart_sup=2
endif
! CUTOFFF ON ELECTROSTATICS
- call reada(controlcard,"R_CUT_ELE",r_cut_ele,15.0d0)
+ call reada(controlcard,"R_CUT_ELE",r_cut_ele,25.0d0)
call reada(controlcard,"LAMBDA_ELE",rlamb_ele,0.3d0)
write(iout,*) "R_CUT_ELE=",r_cut_ele
! Lipidic parameters
! enddo
buff_shield=1.0d0
endif
+ itime_mat=0
return
end subroutine read_control
!-----------------------------------------------------------------------------
print_compon = index(controlcard,"PRINT_COMPON").gt.0
rattle = index(controlcard,"RATTLE").gt.0
preminim=(index(controlcard,'PREMINIM').gt.0)
+ forceminim=(index(controlcard,'FORCEMINIM').gt.0)
write (iout,*) "PREMINIM ",preminim
dccart=(index(controlcard,'CART').gt.0)
if (preminim) call read_minim
open (itube,file=tubename,status='old')
call getenv_loc('IONPAR',ionname)
open (iion,file=ionname,status='old')
+ call getenv_loc('IONPAR_NUCL',ionnuclname)
+ open (iionnucl,file=ionnuclname,status='old')
#else
open(1,file=pref_orig(:ilen(pref_orig))//'.inp',status='old',&
readonly)
open (itube,file=tubename,status='old',action='read')
call getenv_loc('IONPAR',ionname)
open (iion,file=ionname,status='old',action='read')
+ call getenv_loc('IONPAR_NUCL',ionnuclname)
+ open (iionnucl,file=ionnuclname,status='old',action='read')
#ifndef CRYST_SC
call getenv_loc('ROTPARPDB',rotname_pdb)