corrected rst file

[unres4.git] / source / unres / data / energy_data.f90

diff --git a/source/unres/data/energy_data.f90 b/source/unres/data/energy_data.f90
index 11382e2..295d42a 100644 (file)
--- a/source/unres/data/energy_data.f90
+++ b/source/unres/data/energy_data.f90
@@ -64,7 +64,7 @@
       integer :: rescale_mode
       real(kind=8) :: wsc,wscp,welec,wbond,wstrain,wtor,wtor_d,wang,&
        wscloc,wcorr,wcorr4,wcorr5,wcorr6,wsccor,wel_loc,wturn3,wturn4,&
-       wturn6,wvdwpp
+       wturn6,wvdwpp,wliptran,wshield,lipscale,wtube
 #ifdef CLUSTER
       real(kind=8) :: scalscp
 #endif
@@ -88,7 +88,12 @@
 !-----------------------------------------------------------------------------
 ! common.interact
 !      common /interact/
-      real(kind=8),dimension(:,:),allocatable :: aa,bb,augm !(ntyp,ntyp)
+      real(kind=8),dimension(:,:),allocatable :: aa_aq,bb_aq,augm,aa_lip,bb_lip !(ntyp,ntyp)
+      real(kind=8),dimension(:),allocatable :: sc_aa_tube_par,sc_bb_tube_par,&
+       acavtub,bcavtub,ccavtub,dcavtub,tubetranene
+      real(kind=8) :: acavtubpep,bcavtubpep,ccavtubpep,dcavtubpep, &
+      tubetranenepep,pep_aa_tube,pep_bb_tube,tubeR0
+      real(kind=8),dimension(3) :: tubecenter
       real(kind=8),dimension(:,:),allocatable :: aad,bad !(ntyp,2)
       real(kind=8),dimension(2,2) :: app,bpp,ael6,ael3
       integer :: expon,expon2, nnt,nct,itypro
@@ -101,7 +106,7 @@
 ! 12/1/95 Array EPS included in the COMMON block.
 !      common /body/
       real(kind=8),dimension(:,:),allocatable :: sigma !(0:ntyp1,0:ntyp1)
-      real(kind=8),dimension(:,:),allocatable :: eps,sigmaii,&
+      real(kind=8),dimension(:,:),allocatable :: eps,epslip,sigmaii,&
        rs0,chi,r0,r0e  !(ntyp,ntyp) r0e !!! nie używane
       real(kind=8),dimension(:),allocatable :: chip,alp,sigma0,&
        sigii,rr0       !(ntyp)
@@ -109,7 +114,7 @@
       real(kind=8),dimension(:,:),allocatable :: r0d,eps_scp,rscp !(ntyp,2)  r0d  !!! nie używane
 ! 12/5/03 modified 09/18/03 Bond stretching parameters.
 !      common /stretch/
-      real(kind=8) :: vbldp0,akp,distchainmax
+      real(kind=8) :: vbldp0,akp,distchainmax,vbldpDUM
       real(kind=8),dimension(:,:),allocatable :: vbldsc0,aksc,abond0 !(maxbondterm,ntyp)
       integer,dimension(:),allocatable :: nbondterm    !(ntyp)
 !-----------------------------------------------------------------------------
@@ -149,7 +154,8 @@
        iphi_end,iphid_start,iphid_end,ibond_start,ibond_end,&
        ibondp_start,ibondp_end,ivec_start,ivec_end,iset_start,iset_end,&
        iturn3_start,iturn3_end,iturn4_start,iturn4_end,iint_start,&
-       iint_end,iphi1_start,iphi1_end,itau_start,itau_end
+       iint_end,iphi1_start,iphi1_end,itau_start,itau_end,&
+       ilip_start,ilip_end,itube_start,itube_end
       integer,dimension(:),allocatable :: ibond_displ,ibond_count,&
        ithet_displ,ithet_count,iphi_displ,iphi_count,iphi1_displ,&
        iphi1_count,ivec_displ,ivec_count,iset_displ,iset_count,&
@@ -165,18 +171,7 @@
       real(kind=8),dimension(:),allocatable :: utheta,ugamma,uscdiff !(maxfrag_back)
       real(kind=8),dimension(:,:,:),allocatable :: wfrag_back !(3,maxfrag_back,maxprocs/20)
       integer,dimension(:,:,:),allocatable :: ifrag_back !(3,maxfrag_back,maxprocs/20)
-!      common /qmeas/
-      real(kind=8),dimension(50) :: qfrag
-      real(kind=8),dimension(100) :: qpair
-      real(kind=8),dimension(:,:),allocatable :: qinfrag,wfrag !(50,maxprocs/20)
-      real(kind=8),dimension(:,:),allocatable :: qinpair,wpair !(100,maxprocs/20)
-      real(kind=8) :: eq_time,Uconst
-      integer :: iset,nset
-      integer,dimension(:),allocatable :: mset !(maxprocs/20)
-      integer,dimension(:,:,:),allocatable :: ifrag !(2,50,maxprocs/20)
-      integer,dimension(:,:,:),allocatable :: ipair !(2,100,maxprocs/20)
-      integer :: nfrag,npair
-      logical :: usampl
+!      common /qmeas/ in module geometry
 !-----------------------------------------------------------------------------
 ! common.sbridge
 !      common /sbridge/
@@ -257,22 +252,21 @@
 !      common/fourier/  z wham
       real(kind=8),dimension(:,:),allocatable :: b !(13,0:maxtor)
 !-----------------------------------------------------------------------------
-! common.var
-! Store the geometric variables in the following COMMON block.
-!      common /var/ in module geometry_data
-! Store the angles and variables corresponding to old conformations (for use
-! in MCM).
-!      common /oldgeo/
-!el      real(kind=8),dimension(:,:),allocatable :: varsave !(maxvar,maxsave)
-!      real(kind=8),dimension(:),allocatable :: esave !(maxsave)
-!      integer,dimension(:),allocatable :: Origin !(maxsave)
-!      integer :: nstore
-! freeze some variables
-!      common /restr/
-      real(kind=8),dimension(:),allocatable :: varall !(maxvar)
-      integer,dimension(:),allocatable :: mask_theta,&
-       mask_phi,mask_side !(maxres)
-      logical :: mask_r
-!-----------------------------------------------------------------------------
-!-----------------------------------------------------------------------------
+! 24 Apr 2017 
+! Varibles for cutoff on electorstatic
+      real(kind=8) sss_ele_cut,sss_ele_grad
+      integer xshift,yshift,zshift
+!2 Jul 2017 lipidc parameters -----------------------------------------------------
+      real(kind=8),dimension(:), allocatable :: liptranene
+      real(kind=8) :: pepliptran
+
+! 4 Jul 2017 parameters for shieliding 
+      real(kind=8),dimension(:), allocatable :: long_r_sidechain, &
+        short_r_sidechain
+      real(kind=8) :: VSolvSphere,VSolvSphere_div,buff_shield
+      
+
+
+
+
       end module energy_data