! common /cntrl/
integer :: modecalc,iscode,indpdb,indback,indphi,iranconf,&
icheckgrad,iprint,i2ndstr,mucadyn,constr_dist,symetr,shield_mode,&
- tubemode
+ tubemode,genconstr,afmlog,selfguide
logical :: minim,refstr,pdbref,overlapsc,&
energy_dec,sideadd,lsecondary,read_cart,unres_pdb,&
vdisulf,searchsc,lmuca,dccart,extconf,out1file,&
- gnorm_check,gradout,split_ene
+ gnorm_check,gradout,split_ene,with_theta_constr,protein,ions,nucleic
#ifdef CLUSTER
integer :: iopt,nend,nstart,outpdb,outmol2 !cluster
logical :: punch_dist,print_dist,lside,lprint_cart,lprint_int,&