from filex.views import make_url
from qcg.forms import FiltersForm, ColumnsForm, JobDescriptionForm, EnvFormSet, JobTemplateForm
from qcg.models import JobTemplate
-from qcg.utils import paginator_context, to_job_desc, to_form_data
-from qcg.service import update_user_data, update_job, cancel, clean
+from qcg.utils import paginator_context, to_job_desc, to_form_data, restricted
+from qcg.service import update_user_data, update_job, cancel, clean, submit
+
+from django.utils import encoding
+import string
+import random
+import os
+from qcg import constants
+from qcg.utils import chunks, generate_md_inputfile
# for Debugging
from pprint import pprint
return datetime.strptime(string.strip(), "%d.%m.%Y").replace(tzinfo=UTC())
-@login_required
+@restricted
def jobs_list(request):
update_user_data(request.user, request.session['proxy'])
return render(request, 'qcg/jobs.html', context)
-@login_required
+@restricted
def job_details(request, job_id):
- job = get_object_or_404(request.user.jobs.prefetch_related('tasks'), job_id=job_id)
+ job = get_object_or_404(request.user.jobs.select_related('owner').prefetch_related('tasks'), job_id=job_id)
return render(request, 'qcg/job.html', process_details(request, job))
-@login_required
+@restricted
def task_details(request, job_id, task_id):
- task = get_object_or_404(request.user.tasks.select_related('job').prefetch_related('allocations'),
+ task = get_object_or_404(request.user.tasks.select_related('job__owner').prefetch_related('allocations'),
job__job_id=job_id, task_id=task_id)
return render(request, 'qcg/task.html', process_details(request, task.job, task))
return {'job': job, 'task': task, 'form': form, 'env_formset': env_formset, 'template_form': template_form}
-def generate_mremd_inputfile(params, mremd_input):
- mremd_input = list()
- opis=params['note']
- mremd_input.append(opis[:73])
- mremd_input.append('SEED=-3059743 PDBREF MD EXTCONF RESCALE_MODE=2')
-
-
-
-
- return mremd_input
-@login_required
+def id_generator(size=6, chars=string.ascii_uppercase + string.digits):
+ return ''.join(random.choice(chars) for _ in range(size))
+
+@restricted
def job_submit(request, template_id=None):
save_template = 'save-template' in request.POST
template = get_object_or_404(request.user.templates, id=template_id) if template_id is not None else None
params['env_variables'] = [(env['name'], env['value'])
for env in env_formset.cleaned_data if env and not env['DELETE']]
- # tu wygenerować plik inputowy i go uploadować?
- mremd_input=list()
- print generate_mremd_inputfile(params,mremd_input)
+ # Generowanie pliku inputowego
+ md_input=generate_md_inputfile(params)
+ url=os.path.splitext(params['pdb_file'])[0]+'_MD_genarated.inp'
+ params['master_file']=url
+ params['stage_in'].append(params['pdb_file'])
+ # Upload
+ ftp = FTPOperation(request.session['proxy'])
+ ftp.put(url)
+ for chunk in chunks('\n'.join([str(i) for i in md_input] ), 4096):
+ ftp.stream.put(chunk)
+ ftp.stream.put(None)
+ ftp.wait()
-
params['persistent'] = True
- # Debugging parametrów
- pprint(params)
job_desc = to_job_desc(params, request.session['proxy'])
+
if save_template:
template = template_form.save(commit=False)
return redirect(template)
- # wyłączenie wysyłania zadania
- '''
- job = job_desc.submit()
+ # wyłączenie wysyłania zadania - zakomentować poniżej
+
+ job = submit(job_desc, request.session['proxy'])
+
messages.success(request,
format_html('<span class="glyphicon glyphicon-info-sign" aria-hidden="true"></span> '
u'Zlecono zadanie <em>{}</em>.', job.job_id))
- '''
+
return redirect('jobs')
else:
form = JobDescriptionForm(initial=form_data)
return redirect(obj)
-@login_required
+@restricted
def gridftp(request):
return render(request, 'qcg/gridftp.html',
{'new_dir_form': HostPathNameForm(), 'rename_form': RenameForm(), 'archive_form': ArchiveForm()})
-@login_required
+@restricted
def gridftp_upload(request):
form = HostPathForm(request.GET)
'sep': '/' if form.cleaned_data['path'].startswith('~') else ''})
-@login_required
+@restricted
def job_templates(request):
return render(request, 'qcg/job_templates.html', {'templates': request.user.templates.all()})