from django.utils.html import format_html
from django.utils.http import urlencode
from django.utils.timezone import UTC
+from django.views.decorators.http import require_POST
from django_openid_auth.views import make_consumer
from openid.extensions import ax
+from pyqcg.utils import PyqcgException
from filex.forms import HostPathNameForm, RenameForm, ArchiveForm, HostPathForm
from filex.ftp import FTPOperation, FTPError
from filex.views import make_url
-from qcg.forms import FiltersForm, ColumnsForm, JobDescriptionForm, EnvFormSet
-from qcg.utils import paginator_context
-from qcg.service import update_user_data, submit_job
+from qcg.forms import FiltersForm, ColumnsForm, JobDescriptionForm, EnvFormSet, JobTemplateForm
+from qcg.models import JobTemplate
+from qcg.utils import paginator_context, to_job_desc, to_form_data, generate_md_inputfile
+from qcg.service import update_user_data, update_job, cancel, clean
+from django.utils import encoding
+import string
+import random
+import os
+from qcg import constants
+from qcg.utils import chunks
+# for Debugging
+from pprint import pprint
+
def index(request):
return render(request, 'qcg/base.html')
keywords = filters.cleaned_data['keywords']
status = filters.cleaned_data['status']
host = filters.cleaned_data['host']
+ purged = filters.cleaned_data['purged']
submission = filters.cleaned_data['submission']
finish = filters.cleaned_data['finish']
for h in host:
selected_filters.append((host_dict[h], 'host', h))
+ if isinstance(purged, bool):
+ tasks = tasks.filter(purged=purged)
+
+ if purged:
+ selected_filters.append((u"Usunięty katalog roboczy", 'purged', '1'))
+ else:
+ selected_filters.append((u"Istniejący katalog roboczy", 'purged', '0'))
+
if submission:
start, end = submission.split('-')
def job_details(request, job_id):
job = get_object_or_404(request.user.jobs.prefetch_related('tasks'), job_id=job_id)
- return render(request, 'qcg/job.html', {'job': job})
+ return render(request, 'qcg/job.html', process_details(request, job))
@login_required
task = get_object_or_404(request.user.tasks.select_related('job').prefetch_related('allocations'),
job__job_id=job_id, task_id=task_id)
- return render(request, 'qcg/task.html', {'task': task})
+ return render(request, 'qcg/task.html', process_details(request, task.job, task))
+
+
+def process_details(request, job, task=None):
+ if not job.terminated or not job.purged:
+ update_job(job, request.session['proxy'])
+
+ form_data = to_form_data(job.qcg_description)
+ env_formset_data = [{'name': name, 'value': value} for name, value in form_data.pop('env_variables', ())]
+
+ form = JobDescriptionForm(initial=form_data)
+ env_formset = EnvFormSet(initial=env_formset_data)
+ template_form = JobTemplateForm(initial={'name': (task and task.note) or u'Szablon z {}'.format(job.job_id)})
+ for field in form:
+ field.field.widget.attrs['disabled'] = 'True'
+ for env_form in env_formset:
+ for field in env_form:
+ field.field.widget.attrs['disabled'] = 'True'
+
+ return {'job': job, 'task': task, 'form': form, 'env_formset': env_formset, 'template_form': template_form}
+
+
+
+
+def id_generator(size=6, chars=string.ascii_uppercase + string.digits):
+ return ''.join(random.choice(chars) for _ in range(size))
@login_required
-def job_submit(request):
+def job_submit(request, template_id=None):
+ save_template = 'save-template' in request.POST
+ template = get_object_or_404(request.user.templates, id=template_id) if template_id is not None else None
+
+ if template is not None:
+ form_data = to_form_data(template.description)
+ env_formset_data = [{'name': name, 'value': value} for name, value in form_data.pop('env_variables', ())]
+ else:
+ form_data, env_formset_data = None, None
+
if request.method == 'POST':
- form = JobDescriptionForm(request.POST)
- env_formset = EnvFormSet(request.POST)
+ form = JobDescriptionForm(request.POST, initial=form_data)
+ env_formset = EnvFormSet(request.POST, initial=env_formset_data)
+ template_form = JobTemplateForm(request.POST, prefix='template', instance=template)
- if form.is_valid() and env_formset.is_valid():
+ if form.is_valid() and env_formset.is_valid() and (not save_template or template_form.is_valid()):
params = form.cleaned_data
params['env_variables'] = [(env['name'], env['value'])
for env in env_formset.cleaned_data if env and not env['DELETE']]
- job_id = submit_job(params, request.session['proxy'])
+ # Generowanie pliku inputowego
+ md_input=generate_md_inputfile(params)
+ url=os.path.splitext(params['pdb_file'])[0]+'_MD_genarated.inp'
+ params['master_file']=url
+ params['stage_in'].append(params['pdb_file'])
+ # Upload
+ ftp = FTPOperation(request.session['proxy'])
+ ftp.put(url)
+ for chunk in chunks('\n'.join([str(i) for i in md_input] ), 4096):
+ ftp.stream.put(chunk)
+ ftp.stream.put(None)
+ ftp.wait()
+
+ params['persistent'] = True
+ # Debugging parametrów
+ # pprint(params)
+ job_desc = to_job_desc(params, request.session['proxy'])
+
+
+ if save_template:
+ template = template_form.save(commit=False)
+
+ template.owner = request.user
+ template.description = job_desc.xml_description
+ template.save()
+
+ return redirect(template)
+
+ # wyłączenie wysyłania zadania - zakomentować poniżej
+
+ job = job_desc.submit()
messages.success(request,
format_html('<span class="glyphicon glyphicon-info-sign" aria-hidden="true"></span> '
- 'Zlecono zadanie <em>{}</em>.', job_id))
-
+ u'Zlecono zadanie <em>{}</em>.', job.job_id))
+
return redirect('jobs')
+ else:
+ form = JobDescriptionForm(initial=form_data)
+ env_formset = EnvFormSet(initial=env_formset_data)
+ template_form = JobTemplateForm(prefix='template', instance=template)
+
+ errors = form.errors or (env_formset.is_bound and not env_formset.is_valid) or (
+ save_template and template_form.errors)
- print repr(form.errors)
- print repr(env_formset.errors)
+ return render(request, 'qcg/job_submit.html', {'form': form, 'env_formset': env_formset, 'errors': errors,
+ 'template_form': template_form, 'template': template})
+
+
+@require_POST
+@login_required
+def job_cancel(request, job_id):
+ return obj_cancel(request, get_object_or_404(request.user.jobs, job_id=job_id))
+
+
+@require_POST
+@login_required
+def task_cancel(request, job_id, task_id):
+ return obj_cancel(request, get_object_or_404(request.user.tasks, job__job_id=job_id, task_id=task_id))
+
+
+def obj_cancel(request, obj):
+ try:
+ cancel(obj, request.session['proxy'])
+ except PyqcgException as e:
+ messages.error(request, format_html('<span class="glyphicon glyphicon-info-sign" aria-hidden="true"></span> {}',
+ e.message))
else:
- form = JobDescriptionForm()
- env_formset = EnvFormSet()
+ messages.success(request, format_html('<span class="glyphicon glyphicon-info-sign" aria-hidden="true"></span> '
+ 'Zadanie anulowano.'))
- errors = form.errors or (env_formset.is_bound and not env_formset.is_valid)
+ return redirect(obj)
- return render(request, 'qcg/job_submit.html', {'form': form, 'env_formset': env_formset, 'errors': errors})
+
+@require_POST
+@login_required
+def job_clean(request, job_id):
+ return obj_clean(request, get_object_or_404(request.user.jobs, job_id=job_id))
+
+
+@require_POST
+@login_required
+def task_clean(request, job_id, task_id):
+ return obj_clean(request, get_object_or_404(request.user.tasks, job__job_id=job_id, task_id=task_id))
+
+
+def obj_clean(request, obj):
+ try:
+ clean(obj, request.session['proxy'])
+ except PyqcgException as e:
+ messages.error(request, format_html('<span class="glyphicon glyphicon-info-sign" aria-hidden="true"></span> {}',
+ e.message))
+ else:
+ messages.success(request, format_html('<span class="glyphicon glyphicon-info-sign" aria-hidden="true"></span> '
+ 'Usunięto katalog roboczy.'))
+
+ return redirect(obj)
@login_required
{'error': error, 'url': reverse('filex:upload') + '?' + urlencode(form.cleaned_data),
'host': form.cleaned_data['host'], 'path': form.cleaned_data['path'],
'sep': '/' if form.cleaned_data['path'].startswith('~') else ''})
+
+
+@login_required
+def job_templates(request):
+ return render(request, 'qcg/job_templates.html', {'templates': request.user.templates.all()})
+
+
+@require_POST
+@login_required
+def template_delete(request, template_id):
+ template = get_object_or_404(request.user.templates, id=template_id)
+ template.delete()
+
+ messages.success(request, format_html('<span class="glyphicon glyphicon-info-sign" aria-hidden="true"></span> '
+ u'Usunięto szablon <em>{}</em>.', template.name))
+
+ return redirect('job_templates')
+
+
+@require_POST
+@login_required
+def job_save_template(request, job_id):
+ job = get_object_or_404(request.user.jobs, job_id=job_id)
+
+ template_form = JobTemplateForm(request.POST,
+ instance=JobTemplate(owner=request.user, description=job.qcg_description))
+
+ if template_form.is_valid():
+ template = template_form.save()
+
+ return redirect(template)
+
+ messages.error(request, format_html('<span class="glyphicon glyphicon-info-sign" aria-hidden="true"></span> {}'
+ 'Nie udało się zapisać szablonu!', template_form.errors))
+
+ return redirect(job)
projects / qcg-portal.git / blobdiff