refine with ssbond

[django_unres.git] / files / pbs8.csh

diff --git a/files/pbs8.csh b/files/pbs8.csh
index 31d7fb9..89db54b 100755 (executable)
--- a/files/pbs8.csh
+++ b/files/pbs8.csh
@@ -73,7 +73,7 @@ rm ave
 
 #amber min refinement
 foreach i (`seq 1 5`)
-../files/refine.sh MODEL$i.pdb
+../files/refine.sh MODEL$i.pdb $ssbond
 end
 
 /users2/local/pymol_1.6/pymol -c ../files/model.pml