refine with ssbond

[django_unres.git] / files / pbs8.csh

diff --git a/files/pbs8.csh b/files/pbs8.csh
index 2f412cc..89db54b 100755 (executable)
--- a/files/pbs8.csh
+++ b/files/pbs8.csh
@@ -72,8 +72,8 @@ ln -s file_wham_T*K_ave.pdb ave
 rm ave
 
 #amber min refinement
-foreach x (`seq 1 5`)
-../files/refine.sh MODEL$i.pdb
+foreach i (`seq 1 5`)
+../files/refine.sh MODEL$i.pdb $ssbond
 end
 
 /users2/local/pymol_1.6/pymol -c ../files/model.pml