ln -s file_wham_T*K_ave.pdb ave
../files/cluster2allatom.sh ave
rm ave
+
+#amber min refinement
+foreach i (`seq 1 5`)
+../files/refine.sh MODEL$i.pdb
+end
+
/users2/local/pymol_1.6/pymol -c ../files/model.pml
/users2/local/bin/tmscore MODEL1.pdb plik.pdb > tmscore1.out