dock DockQ

[django_unres.git] / django_simple / todo / templates / input.html

diff --git a/django_simple/todo/templates/input.html b/django_simple/todo/templates/input.html
index 63426ff..01a33c8 100644 (file)
--- a/django_simple/todo/templates/input.html
+++ b/django_simple/todo/templates/input.html
@@ -14,7 +14,9 @@ As input Unres server can use protein sequence given using one letter code
 Only standard codes of aminoacids are recognized in PDB files.
 <li>
 PDB files can be downloaded from the PDB database based on given PDB code.
-To select only single chain from use PDB_code:chain_id notation (5G3Q:B)
+To select only a single chain use PDB_code:chain_id notation (for example 
+5G3Q:B), chain_id is case sensitive. For the PDB files containing multiple
+models, only the first models is taken.
 <li>
 Unres server requires input PDB files with continuous (without breaks)
 protein chains. PDB files with gaps in the structure have to be first prepared
@@ -46,5 +48,11 @@ distribution function value (separated by space).
 Secondary structure restraints can be added to MD and MREMD
 simulation in advanced mode. Sequence of letters H,E and C or - for each
 residue is used to input helical, extended and no restraints, respectively.
+<li>
+For MD simulations by default the snapshots are written in PDB format to be
+displayed by NGLViewer. In advanced mode, the user can request the compressed
+cx format, which is recommended for larger jobs. In this case, the movie 
+in mp4 and ogv formats are rendered and displayed. The movie files can also
+be downloaded for further use.
 </ol>
 {% endblock %}