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file.seq additional empty line to read exactly 80 aa
[django_unres.git]
/
django_simple
/
todo
/
jobfiles.py
diff --git
a/django_simple/todo/jobfiles.py
b/django_simple/todo/jobfiles.py
index
e540b4c
..
cdb07e7
100644
(file)
--- a/
django_simple/todo/jobfiles.py
+++ b/
django_simple/todo/jobfiles.py
@@
-316,6
+316,7
@@
CUTOFF=7.00000 WCORR4=0.00000"""
f1 = open('file.seq', 'w')
for i in range(0,len(seq),80):
f1.write(seq[i:i+80]+'\n')
+ f1.write('\n')
f1.close()
ret_code = subprocess.Popen(' /opt/torque/bin/qsub pbs.csh', shell=True, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)