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docking working version
[django_unres.git]
/
files
/
pbs8_new.csh
diff --git
a/files/pbs8_new.csh
b/files/pbs8_new.csh
index
ec056c1
..
cdd73f6
100755
(executable)
--- a/
files/pbs8_new.csh
+++ b/
files/pbs8_new.csh
@@
-96,6
+96,9
@@
endif
if ( `grep -c pdbref file.inp` ) then
awk '{printf "%s%s%s\n",substr($0,0,21)," ",substr($0,23)}' plik.pdb > tmp.pdb
if ( `grep -c pdbref file.inp` ) then
awk '{printf "%s%s%s\n",substr($0,0,21)," ",substr($0,23)}' plik.pdb > tmp.pdb
+ if ( -f "plik1ter.pdb" ) then
+ grep -v TER plik1ter.pdb | awk '{printf "%s%s%s\n",substr($0,0,21)," ",substr($0,23)}' > tmp.pdb
+ endif
/users2/local/mmtsb/perl/convpdb.pl -renumber 1 -out generic tmp.pdb > plik1.pdb
rm tmp.pdb
/users2/local/mmtsb/perl/convpdb.pl -renumber 1 -out generic tmp.pdb > plik1.pdb
rm tmp.pdb