******************************************************************************** * Settings for the program of united-residue peptide simulation in real space * * * * ------- As of 6/23/01 ----------- * * * ******************************************************************************** c implicit real*8 (a-h,o-z) C Max. number of processors. c parameter (maxprocs=128) C Max. number of fine-grain processors c parameter (max_fg_procs=maxprocs) C Max. number of coarse-grain processors c parameter (max_cg_procs=maxprocs) C Max. number of AA residues integer maxres c parameter (maxres=250) c parameter (maxres=1200) parameter (maxres=10000) C Max. number of cysteines and other bridging residues integer max_cyst parameter (max_cyst=100) C Appr. max. number of interaction sites integer maxres2 parameter (maxres2=2*maxres) c Max. number of chains integer maxchain parameter (maxchain=50) C Max number of symetries integer maxsym,maxperm parameter (maxsym=maxchain,maxperm=5040) C Max. number of variables integer maxvar parameter (maxvar=4*maxres) C Max. number of groups of interactions that a given SC is involved in integer maxint_gr parameter (maxint_gr=2) C Max. number of derivatives of virtual-bond and side-chain vectors in theta C or phi. integer maxdim parameter (maxdim=(maxres-1)*(maxres-2)/2) c parameter (maxdim=10000) C Max. number of SC contacts integer maxcont parameter (maxcont=12*maxres) C Max. number of contacts per residue integer maxconts parameter (maxconts=maxres) C Max. number of interactions within cutoff per residue integer maxint_res parameter (maxint_res=200) C Max. number od residues within distance cufoff from a given residue to C include in template-based/contact distance restraints. integer maxcont_res parameter (maxcont_res=200) C Max. number of distance/contact-distance restraints integer maxdim_cont c parameter (maxdim_cont=maxres*maxcont_res) parameter (maxdim_cont=maxres*1000) C Number of AA types (at present only natural AA's will be handled integer ntyp,ntyp1 parameter (ntyp=24,ntyp1=ntyp+1) integer nntyp parameter (nntyp=ntyp*(ntyp+1)/2) C Max. number of types of dihedral angles & multiplicity of torsional barriers C and the number of terms in double torsionals integer maxtor,maxterm,maxlor,maxtermd_1,maxtermd_2,maxtor_kcc, & maxval_kcc parameter (maxtor=4,maxterm=10,maxlor=3,maxtermd_1=8,maxtermd_2=8) parameter (maxtor_kcc=6,maxval_kcc=6) c Max number of new valence-angle (only) terms integer maxang_kcc parameter (maxang_kcc=36) c Max number of torsional terms in SCCOR integer maxterm_sccor parameter (maxterm_sccor=6) C Max. number of residue types and parameters in expressions for C virtual-bond angle bending potentials integer maxthetyp,maxthetyp1,maxtheterm,maxtheterm2,maxtheterm3, & maxsingle,maxdouble,mmaxtheterm parameter (maxthetyp=3,maxthetyp1=maxthetyp+1,maxtheterm=20, & maxtheterm2=6,maxtheterm3=4,maxsingle=6,maxdouble=4, & mmaxtheterm=maxtheterm) C Max. number of lobes in SC distribution integer maxlob parameter (maxlob=4) C Max. number of S-S bridges integer maxss parameter (maxss=max_cyst*(max_cyst-1)/2) C Max. number of dihedral angle constraints integer maxdih_constr parameter (maxdih_constr=maxres) C Max. number of patterns in the pattern database integer maxseq parameter (maxseq=1000) C Max. number of residues in a peptide in the database integer maxres_base parameter (maxres_base=1000) C Max. number of threading attempts integer maxthread parameter (maxthread=2000) C Max. number of move types in MCM integer maxmovetype parameter (maxmovetype=4) C Max. number of stored confs. in MC/MCM simulation integer maxsave parameter (maxsave=2000) C Max. number of conformations in Master's cache array integer max_cache parameter (max_cache=1000) C Max. number of conformations in the pool integer max_pool parameter (max_pool=1000) C Number of threads in deformation integer max_thread,max_thread2 parameter (max_thread=40,max_thread2=2*max_thread) C Number of steps in DSM integer max_step parameter (max_step=1) C Number of structures to compare at t=0 integer max_threadss,max_threadss2 parameter (max_threadss=80,max_threadss2=2*max_threadss) C Maxmimum number of angles per residue integer mxang parameter (mxang=4) C Maximum number of groups of angles integer mxgr parameter (mxgr=2*maxres) C Maximum number of chains integer mxch parameter (mxch=1) C Maximum number of generated conformations integer mxio parameter (mxio=1000) C Maximum number of seed integer max_seed parameter (max_seed=100) C Maximum number of structures for ZSCORE for each protein integer maxzs parameter (maxzs=2) C Maximum number of structures stored for comparison for ZSCORE for each protein integer maxzs1 parameter (maxzs1=6) C Maximum number of proteins for ZSCORE integer maxprotzs parameter (maxprotzs=1) C Maximum number of conf in rmsdbank integer maxrmsdb parameter (maxrmsdb=110) C Maximum number of bankt conformations integer mxiot parameter (mxiot=mxio) c Maximum number of conformations in MCMF integer maxstr_mcmf parameter (maxstr_mcmf=800) c Maximum number of families in MCMF integer maxfam_p parameter (maxfam_p=20) c Maximum number of structures in family in MCMF integer maxstr_fam parameter (maxstr_fam=40) C Maximum number of threads in MCMF integer maxthread_mcmf parameter (maxthread_mcmf=10) C Maximum number of SC local term fitting function coefficiants integer maxsccoef parameter (maxsccoef=65) C Maximum number of terms in SC bond-stretching potential integer maxbondterm parameter (maxbondterm=3) C Maximum number of bins in SAXS restraints integer MaxSAXS parameter (MaxSAXS=1000) C Maximum number of templates in homology-modeling restraints integer max_template parameter(max_template=50) c Maximum number of clusters of templates containing same fragments integer maxclust parameter(maxclust=1000)