# # CMake project file for WHAM single chain version # enable_language (Fortran) #================================ # Set source file lists #================================ # dummy library for automatic dependency set(UNRES_WHAM_SRC_DATA wham_data.f90 w_compar_data.f90 w_comm_local.f90 ) set(UNRES_WHAM_SRC0 ../unres/data/names.f90 ../unres/data/io_units.f90 ../unres/data/calc_data.f90 ../unres/data/compare_data.f90 ../unres/data/control_data.f90 ../unres/data/CSA_data.f90 ../unres/data/energy_data.f90 ../unres/data/geometry_data.f90 ../unres/data/MCM_data.f90 ../unres/data/MD_data.f90 ../unres/data/minim_data.f90 ../unres/data/MPI_data.f90 ../unres/data/comm_local.f90 ../unres/math.f90 ../unres/geometry.f90 ../unres/io_base.f90 ../unres/energy.f90 ../unres/control.F90 ../unres/io_config.f90 ../unres/regularize.f90 ../unres/compare.F90 io_database.f90 io_wham.f90 conform_compar.f90 enecalc.f90 wham_calc.f90 work_partition.f90 wham.f90 ) #================================================ # Set compiler flags for different sourcefiles #================================================ if (Fortran_COMPILER_NAME STREQUAL "ifort") set (CMAKE_Fortran_FLAGS_RELEASE " ") set (CMAKE_Fortran_FLAGS_DEBUG "-O0 -g ") set(FFLAGS0 "-fpp -mcmodel=medium -shared-intel " ) elseif (Fortran_COMPILER_NAME STREQUAL "gfortran") set(FFLAGS0 "-fpp -std=legacy -mcmodel=medium -g ") elseif (Fortran_COMPILER_NAME STREQUAL "pgf90") set(FFLAGS0 "-fpp -mcmodel=medium -Mlarge_arrays ") else () set(FFLAGS0 "-fpp -g -mcmodel=medium " ) endif (Fortran_COMPILER_NAME STREQUAL "ifort") #========================================= # Add MPI compiler flags #========================================= if(UNRES_WITH_MPI) set(FFLAGS0 "${FFLAGS0} -I${MPI_Fortran_INCLUDE_PATH}") endif(UNRES_WITH_MPI) set_property(SOURCE ${UNRES_WHAM_SRC0} PROPERTY COMPILE_FLAGS ${FFLAGS0} ) set_property(SOURCE ${UNRES_WHAM_SRC_DATA} PROPERTY COMPILE_FLAGS ${FFLAGS0} ) #========================================= # Settings for GAB force field #========================================= if(UNRES_MD_FF STREQUAL "GAB" ) # set preprocesor flags set(CPPFLAGS "PROCOR -DSPLITELE -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DSCCORPDB" ) #========================================= # Settings for E0LL2Y force field #========================================= elseif(UNRES_MD_FF STREQUAL "E0LL2Y") # set preprocesor flags set(CPPFLAGS "PROCOR -DSPLITELE -DSCCORPDB" ) elseif(UNRES_MD_FF STREQUAL "4P") set(CPPFLAGS "SPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DSCCORPDB" ) endif(UNRES_MD_FF STREQUAL "GAB") #========================================= # Additional flags #========================================= set(CPPFLAGS "${CPPFLAGS} -DUNRES -DISNAN -DWHAM_RUN ") #========================================= # System specific flags #========================================= if(${CMAKE_SYSTEM_NAME} MATCHES "Linux") set(CPPFLAGS "${CPPFLAGS} -DLINUX") endif(${CMAKE_SYSTEM_NAME} MATCHES "Linux") #========================================= # Compiler specific flags #========================================= if (Fortran_COMPILER_NAME STREQUAL "ifort") # Add ifort preprocessor flags set(CPPFLAGS "${CPPFLAGS} -DPGI") elseif (Fortran_COMPILER_NAME STREQUAL "f95") # Add new gfortran flags set(CPPFLAGS "${CPPFLAGS} -DG77") elseif (Fortran_COMPILER_NAME STREQUAL "gfortran") # Add old gfortran flags set(CPPFLAGS "${CPPFLAGS} -DG77") elseif (Fortran_COMPILER_NAME STREQUAL "pgf90") set(CPPFLAGS "${CPPFLAGS} -DPGI") FILE(COPY ${CMAKE_SOURCE_DIR}/source/lib/isnan_pgi.f DESTINATION ${CMAKE_CURRENT_BINARY_DIR} ) list(APPEND UNRES_WHAM_SRC0 ${CMAKE_CURRENT_BINARY_DIR}/isnan_pgi.f) set(CMAKE_EXE_LINKER_FLAGS "-Bdynamic") endif (Fortran_COMPILER_NAME STREQUAL "ifort") #========================================= # Add MPI preprocessor flags #========================================= set(CPPFLAGS "${CPPFLAGS} -DMPI") #========================================= # Add 64-bit specific preprocessor flags #========================================= if (architektura STREQUAL "64") set(CPPFLAGS "${CPPFLAGS} -DAMD64") endif (architektura STREQUAL "64") #========================================= # Apply preprocesor flags to *.F files #========================================= set_property(SOURCE ${UNRES_WHAM_SRC0} PROPERTY COMPILE_DEFINITIONS ${CPPFLAGS} ) set_property(SOURCE ${UNRES_WHAM_SRC_DATA} PROPERTY COMPILE_DEFINITIONS ${CPPFLAGS} ) #======================================== # Setting binary name #======================================== set(UNRES_WHAM_BIN "wham_${Fortran_COMPILER_NAME}_MPI_${UNRES_MD_FF}.exe") #========================================= # cinfo.f workaround for CMake #========================================= # get the current date TODAY(DATE) # generate cinfo.f set(CINFO "${CMAKE_CURRENT_BINARY_DIR}/cinfo.f90") FILE(WRITE ${CINFO} "! CMake generated file cinfo.f90 subroutine cinfo use io_units write(iout,*)'++++ Compile info ++++' write(iout,*)'Version ${UNRES_MAJOR}.${UNRES_MINOR} build ${UNRES_PATCH}' ") CINFO_FORMAT(${CINFO} "Compiled" "${DATE}" ) CINFO_FORMAT(${CINFO} "Compiled by" "$ENV{USER}@$ENV{HOST}" ) CINFO_FORMAT(${CINFO} "OS name:" "${CMAKE_SYSTEM_NAME}" ) CINFO_FORMAT(${CINFO} "OS release:" "${CMAKE_SYSTEM}" ) CINFO_FORMAT(${CINFO} "Fortran Compiler:" "${CMAKE_Fortran_COMPILER}" ) CINFO_FORMAT(${CINFO} "MD Force field:" "${UNRES_MD_FF}" ) CINFO_FORMAT(${CINFO} "CPPFLAGS =" "${CPPFLAGS}") FILE(APPEND ${CINFO} " write(iout,*)'++++ End of compile info ++++' return end ") # set include path set_property(SOURCE ${CMAKE_CURRENT_BINARY_DIR}/cinfo.f90 PROPERTY COMPILE_FLAGS "${FFLAGS0} -I${CMAKE_CURRENT_SOURCE_DIR}" ) #set_property(SOURCE proc_proc.c PROPERTY COMPILE_FLAGS "-D${CPPFLAGS}") #========================================= # Set full unres CSA sources #========================================= set(UNRES_WHAM_SRCS ${UNRES_WHAM_SRC0} ${CMAKE_CURRENT_BINARY_DIR}/cinfo.f90 ) #========================================= # Build the binary #========================================= add_executable(UNRES_WHAM_BIN ${UNRES_WHAM_SRCS} ) add_library(wham_data_lib ${UNRES_WHAM_SRC_DATA}) target_link_libraries (UNRES_WHAM_BIN wham_data_lib) set_target_properties(UNRES_WHAM_BIN PROPERTIES OUTPUT_NAME ${UNRES_WHAM_BIN}) set_property(TARGET UNRES_WHAM_BIN PROPERTY RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin ) #add_dependencies (${UNRES_BIN} ${UNRES_XDRFLIB}) #========================================= # Link libraries #========================================= # link MPI libraries target_link_libraries( UNRES_WHAM_BIN ${MPI_Fortran_LIBRARIES} ) # link libxdrf.a target_link_libraries( UNRES_WHAM_BIN xdrf ) #========================================= # Install Path #========================================= install(TARGETS UNRES_WHAM_BIN DESTINATION ${CMAKE_INSTALL_PREFIX}) #========================================= # TESTS #========================================= # MESSAGE (STATUS "${MPI_Fortran_LIBRARIES}") if ("${MPI_Fortran_LIBRARIES}" MATCHES "lam") MESSAGE (STATUS "LAM MPI library detected") set (boot_lam "-boot") else() set (boot_lam "") endif() if (UNRES_SRUN) set (np "-n") set (mpiexec "srun") elseif(UNRES_MPIRUN) set (np "-np") set (mpiexec "mpirun") else() set (np "-np") set (mpiexec "mpiexec") endif() FILE(WRITE ${CMAKE_CURRENT_BINARY_DIR}/scripts/wham_mpi_E0LL2Y.sh "#!/bin/sh export POT=GB export PREFIX=$1 #----------------------------------------------------------------------------- WHAM_BIN=${CMAKE_BINARY_DIR}/bin/${UNRES_WHAM_BIN} #----------------------------------------------------------------------------- DD=${CMAKE_SOURCE_DIR}/PARAM export BONDPAR=$DD/bond_AM1.parm export THETPAR=$DD/theta_abinitio.parm export ROTPAR=$DD/rotamers_AM1_aura.10022007.parm export TORPAR=$DD/torsion_631Gdp.parm export TORDPAR=$DD/torsion_double_631Gdp.parm export ELEPAR=$DD/electr_631Gdp.parm export SIDEPAR=$DD/scinter_$POT.parm export FOURIER=$DD/fourier_opt.parm.1igd_hc_iter3_3 export SCPPAR=$DD/scp.parm export SCCORPAR=$DD/sccor_am1_pawel.dat export THETPARPDB=$DD/thetaml.5parm export ROTPARPDB=$DD/scgauss.parm export PATTERN=$DD/patterns.cart export CONTFUNC=GB export SIDEP=$DD/contact.3.parm export SCRATCHDIR=. #----------------------------------------------------------------------------- echo CTEST_FULL_OUTPUT ${mpiexec} ${boot_lam} ${np} $2 $WHAM_BIN ./wham_check.sh $1 ") # # File permissions workaround # FILE( COPY ${CMAKE_CURRENT_BINARY_DIR}/scripts/wham_mpi_E0LL2Y.sh DESTINATION ${CMAKE_CURRENT_BINARY_DIR} FILE_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE ) FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/wham_check.sh DESTINATION ${CMAKE_CURRENT_BINARY_DIR} FILE_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE ) FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/1L2Y_wham.inp DESTINATION ${CMAKE_CURRENT_BINARY_DIR} ) FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/1L2Y_remd_MD000.cx DESTINATION ${CMAKE_CURRENT_BINARY_DIR} ) FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/1L2Y.pdb DESTINATION ${CMAKE_CURRENT_BINARY_DIR} ) if(UNRES_MD_FF STREQUAL "E0LL2Y") add_test(NAME WHAM_remd COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/wham_mpi_E0LL2Y.sh 1L2Y_wham 2 ) endif(UNRES_MD_FF STREQUAL "E0LL2Y")