subroutine MREMD implicit real*8 (a-h,o-z) include 'DIMENSIONS' include 'mpif.h' include 'COMMON.CONTROL' include 'COMMON.VAR' include 'COMMON.MD' #ifndef LANG0 include 'COMMON.LANGEVIN' #else include 'COMMON.LANGEVIN.lang0' #endif include 'COMMON.CHAIN' include 'COMMON.DERIV' include 'COMMON.GEO' include 'COMMON.LOCAL' include 'COMMON.INTERACT' include 'COMMON.IOUNITS' include 'COMMON.NAMES' include 'COMMON.TIME1' include 'COMMON.REMD' include 'COMMON.SETUP' include 'COMMON.MUCA' double precision cm(3),L(3),vcm(3) double precision energia(0:n_ene) double precision remd_t_bath(maxprocs) double precision remd_ene(0:n_ene+1,maxprocs) integer iremd_acc(maxprocs),iremd_tot(maxprocs) integer ilen,rstcount external ilen character*50 tytul common /gucio/ cm integer itime cold integer nup(0:maxprocs),ndown(0:maxprocs) integer rep2i(0:maxprocs),ireqi(maxprocs) integer itime_all(maxprocs) integer status(MPI_STATUS_SIZE),statusi(MPI_STATUS_SIZE,maxprocs) logical synflag,end_of_run,file_exist time00=MPI_WTIME() if(me.eq.king.or..not.out1file) & write (iout,*) 'MREMD',nodes,'time before',time00-walltime synflag=.false. mremd_rst_name=prefix(:ilen(prefix))//"_mremd.rst" cd print *,'MREMD',nodes cd print *,'mmm',me,remd_mlist,(remd_m(i),i=1,nrep) cde write (iout,*) "Start MREMD: me",me," t_bath",t_bath k=0 rep2i(k)=-1 do i=1,nrep iremd_acc(i)=0 iremd_tot(i)=0 do j=1,remd_m(i) i2rep(k)=i rep2i(i)=k k=k+1 enddo enddo c print *,'i2rep',me,i2rep(me) c print *,'rep2i',(rep2i(i),i=0,nrep) cold if (i2rep(me).eq.nrep) then cold nup(0)=0 cold else cold nup(0)=remd_m(i2rep(me)+1) cold k=rep2i(int(i2rep(me)))+1 cold do i=1,nup(0) cold nup(i)=k cold k=k+1 cold enddo cold endif cd print '(i4,a4,100i4)',me,' nup',(nup(i),i=0,nup(0)) cold if (i2rep(me).eq.1) then cold ndown(0)=0 cold else cold ndown(0)=remd_m(i2rep(me)-1) cold k=rep2i(i2rep(me)-2)+1 cold do i=1,ndown(0) cold ndown(i)=k cold k=k+1 cold enddo cold endif cd print '(i4,a6,100i4)',me,' ndown',(ndown(i),i=0,ndown(0)) if(rest.and.restart1file) then inquire(file=mremd_rst_name,exist=file_exist) if(file_exist) call read1restart endif if(me.eq.king) then if (rest.and..not.restart1file) & inquire(file=mremd_rst_name,exist=file_exist) IF (rest.and.file_exist.and..not.restart1file) THEN open(irest2,file=mremd_rst_name,status='unknown') read (irest2,*) read (irest2,*) (i2rep(i),i=0,nodes-1) read (irest2,*) read (irest2,*) (ifirst(i),i=1,remd_m(1)) do il=1,nodes read (irest2,*) read (irest2,*) nupa(0,il),(nupa(i,il),i=1,nupa(0,il)) read (irest2,*) read (irest2,*) ndowna(0,il), & (ndowna(i,il),i=1,ndowna(0,il)) enddo close(irest2) write (iout,'(a6,1000i5)') "i2rep",(i2rep(i),i=0,nodes-1) write (iout,'(a6,1000i5)') "ifirst", & (ifirst(i),i=1,remd_m(1)) do il=1,nodes write (iout,'(a6,i4,a1,100i4)') "nupa",il,":", & (nupa(i,il),i=1,nupa(0,il)) write (iout,'(a6,i4,a1,100i4)') "ndowna",il,":", & (ndowna(i,il),i=1,ndowna(0,il)) enddo ELSE IF (.not.(rest.and.file_exist)) THEN do il=1,remd_m(1) ifirst(il)=il enddo do il=1,nodes if (i2rep(il-1).eq.nrep) then nupa(0,il)=0 else nupa(0,il)=remd_m(i2rep(il-1)+1) k=rep2i(int(i2rep(il-1)))+1 do i=1,nupa(0,il) nupa(i,il)=k+1 k=k+1 enddo endif if (i2rep(il-1).eq.1) then ndowna(0,il)=0 else ndowna(0,il)=remd_m(i2rep(il-1)-1) k=rep2i(i2rep(il-1)-2)+1 do i=1,ndowna(0,il) ndowna(i,il)=k+1 k=k+1 enddo endif enddo c write (iout,'(a6,100i4)') "ifirst", c & (ifirst(i),i=1,remd_m(1)) c do il=1,nodes c write (iout,'(a6,i4,a1,100i4)') "nupa",il,":", c & (nupa(i,il),i=1,nupa(0,il)) c write (iout,'(a6,i4,a1,100i4)') "ndowna",il,":", c & (ndowna(i,il),i=1,ndowna(0,il)) c enddo ENDIF endif c c t_bath=retmin+(retmax-retmin)*me/(nodes-1) if(.not.(rest.and.file_exist.and.restart1file)) then if (me .eq. king) then t_bath=retmin else t_bath=retmin+(retmax-retmin)*exp(float(i2rep(me)-nrep)) endif cd print *,'ttt',me,remd_tlist,(remd_t(i),i=1,nrep) if (remd_tlist) t_bath=remd_t(int(i2rep(me))) endif c stdfp=dsqrt(2*Rb*t_bath/d_time) do i=1,ntyp stdfsc(i)=dsqrt(2*Rb*t_bath/d_time) enddo c print *,'irep',me,t_bath if (.not.rest) then if (me.eq.king .or. .not. out1file) & write (iout,'(a60,f10.5)') "REMD Temperature:",t_bath call rescale_weights(t_bath) endif c------copy MD-------------- c The driver for molecular dynamics subroutines c------------------------------------------------ t_MDsetup=0.0d0 t_langsetup=0.0d0 t_MD=0.0d0 t_enegrad=0.0d0 t_sdsetup=0.0d0 if(me.eq.king.or..not.out1file) & write (iout,'(20(1h=),a20,20(1h=))') "MD calculation started" tt0 = tcpu() c Determine the inverse of the inertia matrix. call setup_MD_matrices c Initialize MD call init_MD if (rest) then if (me.eq.king .or. .not. out1file) & write (iout,'(a60,f10.5)') "REMD restart Temperature:",t_bath stdfp=dsqrt(2*Rb*t_bath/d_time) do i=1,ntyp stdfsc(i)=dsqrt(2*Rb*t_bath/d_time) enddo call rescale_weights(t_bath) endif t_MDsetup = tcpu()-tt0 rstcount=0 c Entering the MD loop tt0 = tcpu() if (lang.eq.2 .or. lang.eq.3) then call setup_fricmat if (lang.eq.2) then call sd_verlet_p_setup else call sd_verlet_ciccotti_setup endif #ifndef LANG0 do i=1,dimen do j=1,dimen pfric0_mat(i,j,0)=pfric_mat(i,j) afric0_mat(i,j,0)=afric_mat(i,j) vfric0_mat(i,j,0)=vfric_mat(i,j) prand0_mat(i,j,0)=prand_mat(i,j) vrand0_mat1(i,j,0)=vrand_mat1(i,j) vrand0_mat2(i,j,0)=vrand_mat2(i,j) enddo enddo #endif flag_stoch(0)=.true. do i=1,maxflag_stoch flag_stoch(i)=.false. enddo else if (lang.eq.1 .or. lang.eq.4) then call setup_fricmat endif time00=MPI_WTIME() if (me.eq.king .or. .not. out1file) & write(iout,*) 'Setup time',time00-walltime call flush(iout) t_langsetup=tcpu()-tt0 tt0=tcpu() itime=0 end_of_run=.false. do while(.not.end_of_run) itime=itime+1 if(itime.eq.n_timestep.and.me.eq.king) end_of_run=.true. if(mremdsync.and.itime.eq.n_timestep) end_of_run=.true. rstcount=rstcount+1 if (lang.gt.0 .and. surfarea .and. & mod(itime,reset_fricmat).eq.0) then if (lang.eq.2 .or. lang.eq.3) then call setup_fricmat if (lang.eq.2) then call sd_verlet_p_setup else call sd_verlet_ciccotti_setup endif #ifndef LANG0 do i=1,dimen do j=1,dimen pfric0_mat(i,j,0)=pfric_mat(i,j) afric0_mat(i,j,0)=afric_mat(i,j) vfric0_mat(i,j,0)=vfric_mat(i,j) prand0_mat(i,j,0)=prand_mat(i,j) vrand0_mat1(i,j,0)=vrand_mat1(i,j) vrand0_mat2(i,j,0)=vrand_mat2(i,j) enddo enddo #endif flag_stoch(0)=.true. do i=1,maxflag_stoch flag_stoch(i)=.false. enddo else if (lang.eq.1 .or. lang.eq.4) then call setup_fricmat endif write (iout,'(a,i10)') & "Friction matrix reset based on surface area, itime",itime endif if (reset_vel .and. tbf .and. lang.eq.0 & .and. mod(itime,count_reset_vel).eq.0) then call random_vel if (me.eq.king .or. .not. out1file) & write(iout,'(a,f20.2)') & "Velocities reset to random values, time",totT do i=0,2*nres do j=1,3 d_t_old(j,i)=d_t(j,i) enddo enddo endif if (reset_moment .and. mod(itime,count_reset_moment).eq.0) then call inertia_tensor call vcm_vel(vcm) do j=1,3 d_t(j,0)=d_t(j,0)-vcm(j) enddo call kinetic(EK) kinetic_T=2.0d0/(dimen*Rb)*EK scalfac=dsqrt(T_bath/kinetic_T) cd write(iout,'(a,f20.2)') "Momenta zeroed out, time",totT do i=0,2*nres do j=1,3 d_t_old(j,i)=scalfac*d_t(j,i) enddo enddo endif if (lang.ne.4) then if (RESPA) then c Time-reversible RESPA algorithm c (Tuckerman et al., J. Chem. Phys., 97, 1990, 1992) call RESPA_step(itime) else c Variable time step algorithm. call velverlet_step(itime) endif else call brown_step(itime) endif if(ntwe.ne.0) then if (mod(itime,ntwe).eq.0) call statout(itime) endif if (mod(itime,ntwx).eq.0.and..not.traj1file) then write (tytul,'("time",f8.2," temp",f8.1)') totT,t_bath if(mdpdb) then call pdbout(potE,tytul,ipdb) else call cartout(totT) endif endif if (mod(itime,ntwx).eq.0.and.traj1file) then if(ntwx_cache.lt.max_cache_traj) then ntwx_cache=ntwx_cache+1 totT_cache(ntwx_cache)=totT EK_cache(ntwx_cache)=EK potE_cache(ntwx_cache)=potE t_bath_cache(ntwx_cache)=t_bath Uconst_cache(ntwx_cache)=Uconst do i=1,nfrag qfrag_cache(i,ntwx_cache)=qfrag(i) enddo do i=1,npair qpair_cache(i,ntwx_cache)=qpair(i) enddo do i=1,nres*2 do j=1,3 c_cache(j,i,ntwx_cache)=c(j,i) enddo enddo else print *,itime,"processor ",me," over cache ",ntwx_cache endif endif if ((rstcount.eq.1000.or.itime.eq.n_timestep) & .and..not.restart1file) then if(me.eq.king) then open(irest1,file=mremd_rst_name,status='unknown') write (irest1,*) "i2rep" write (irest1,*) (i2rep(i),i=0,nodes-1) write (irest1,*) "ifirst" write (irest1,*) (ifirst(i),i=1,remd_m(1)) do il=1,nodes write (irest1,*) "nupa",il write (irest1,*) nupa(0,il),(nupa(i,il),i=1,nupa(0,il)) write (irest1,*) "ndowna",il write (irest1,*) ndowna(0,il), & (ndowna(i,il),i=1,ndowna(0,il)) enddo close(irest1) endif open(irest2,file=rest2name,status='unknown') write(irest2,*) totT,EK,potE,totE,t_bath do i=1,2*nres write (irest2,'(3e15.5)') (d_t(j,i),j=1,3) enddo do i=1,2*nres write (irest2,'(3e15.5)') (dc(j,i),j=1,3) enddo close(irest2) rstcount=0 endif c REMD - exchange c forced synchronization if (mod(itime,i_sync_step).eq.0 .and. me.ne.king & .and. .not. mremdsync) then synflag=.false. call mpi_iprobe(0,101,mpi_comm_world,synflag,status,ierr) if (synflag) then call mpi_recv(itime_master, 1, MPI_INTEGER, & 0,101,mpi_comm_world, status, ierr) call mpi_barrier(mpi_comm_world, ierr) if (out1file.or.traj1file) then call mpi_gather(itime,1,mpi_integer, & itime_all,1,mpi_integer,king, & mpi_comm_world,ierr) endif if (.not.out1file) & write(iout,*) 'REMD synchro at',itime_master,itime if(itime_master.ge.n_timestep) end_of_run=.true. ctime call flush(iout) endif endif c REMD - exchange if ((mod(itime,nstex).eq.0.and.me.eq.king & .or.end_of_run.and.me.eq.king ) & .and. .not. mremdsync ) then synflag=.true. time00=MPI_WTIME() do i=1,nodes-1 call mpi_isend(itime,1,MPI_INTEGER,i,101, & mpi_comm_world, ireqi(i), ierr) cd write(iout,*) 'REMD synchro with',i cd call flush(iout) enddo call mpi_waitall(nodes-1,ireqi,statusi,ierr) call mpi_barrier(mpi_comm_world, ierr) time01=MPI_WTIME() write(iout,*) 'REMD synchro at',itime,'time=',time01-time00 if (out1file.or.traj1file) then call mpi_gather(itime,1,mpi_integer, & itime_all,1,mpi_integer,king, & mpi_comm_world,ierr) ctime write(iout,'(a19,8000i8)') ' REMD synchro itime', ctime & (itime_all(i),i=1,nodes) if(traj1file) then imin_itime=itime_all(1) do i=2,nodes if(itime_all(i).lt.imin_itime) imin_itime=itime_all(i) enddo ii_write=(imin_itime-imin_itime_old)/ntwx imin_itime_old=int(imin_itime/ntwx)*ntwx write(iout,*) imin_itime,imin_itime_old,ii_write endif endif ctime call flush(iout) endif if(mremdsync .and. mod(itime,nstex).eq.0) then synflag=.true. if (me.eq.king .or. .not. out1file) & write(iout,*) 'REMD synchro at',itime call flush(iout) endif if(synflag.and..not.end_of_run) then time02=MPI_WTIME() synflag=.false. cd write(iout,*) 'REMD before',me,t_bath c call mpi_gather(t_bath,1,mpi_double_precision, c & remd_t_bath,1,mpi_double_precision,king, c & mpi_comm_world,ierr) potEcomp(n_ene+1)=t_bath potEcomp(n_ene+2)=iset call mpi_gather(potEcomp(0),n_ene+3,mpi_double_precision, & remd_ene(0,1),n_ene+3,mpi_double_precision,king, & mpi_comm_world,ierr) if(lmuca) then call mpi_gather(elow,1,mpi_double_precision, & elowi,1,mpi_double_precision,king, & mpi_comm_world,ierr) call mpi_gather(ehigh,1,mpi_double_precision, & ehighi,1,mpi_double_precision,king, & mpi_comm_world,ierr) endif time03=MPI_WTIME() if (me.eq.king .or. .not. out1file) then write(iout,*) 'REMD gather times=',time03-time01 & ,time03-time02 endif if (restart1file) call write1rst time04=MPI_WTIME() if (me.eq.king .or. .not. out1file) then write(iout,*) 'REMD writing rst time=',time04-time03 endif if (traj1file) call write1traj time05=MPI_WTIME() if (me.eq.king .or. .not. out1file) then write(iout,*) 'REMD writing traj time=',time05-time04 endif if (me.eq.king) then do i=1,nodes remd_t_bath(i)=remd_ene(n_ene+1,i) enddo if(lmuca) then co write(iout,*) 'REMD exchange temp,ene,elow,ehigh' do i=1,nodes write(iout,'(i4,4f12.5)') i,remd_t_bath(i),remd_ene(0,i), & elowi(i),ehighi(i) enddo else cd write(iout,*) 'REMD exchange temp,ene' c do i=1,nodes co write(iout,'(i4,2f12.5)') i,remd_t_bath(i),remd_ene(0,i) c write(iout,'(6f12.5)') (remd_ene(j,i),j=1,n_ene) c enddo endif c------------------------------------- do irr=1,remd_m(1) i=ifirst(iran_num(1,remd_m(1))) do ii=1,nodes-1 if(i.gt.0.and.nupa(0,i).gt.0) then iex=nupa(iran_num(1,int(nupa(0,i))),i) if (lmuca) then call muca_delta(remd_t_bath,remd_ene,i,iex,delta) else c Swap temperatures between conformations i and iex with recalculating the free energies c following temperature changes. ene_iex_iex=remd_ene(0,iex) ene_i_i=remd_ene(0,i) co write (iout,*) "rescaling weights with temperature", co & remd_t_bath(i) call rescale_weights(remd_t_bath(i)) call sum_energy(remd_ene(0,iex)) ene_iex_i=remd_ene(0,iex) cd write (iout,*) "ene_iex_i",remd_ene(0,iex) call sum_energy(remd_ene(0,i)) cd write (iout,*) "ene_i_i",remd_ene(0,i) c write (iout,*) "rescaling weights with temperature", c & remd_t_bath(iex) if (real(ene_i_i).ne.real(remd_ene(0,i))) then write (iout,*) "ERROR: inconsistent energies:",i, & ene_i_i,remd_ene(0,i) endif call rescale_weights(remd_t_bath(iex)) call sum_energy(remd_ene(0,i)) c write (iout,*) "ene_i_iex",remd_ene(0,i) ene_i_iex=remd_ene(0,i) call sum_energy(remd_ene(0,iex)) if (real(ene_iex_iex).ne.real(remd_ene(0,iex))) then write (iout,*) "ERROR: inconsistent energies:",iex, & ene_iex_iex,remd_ene(0,iex) endif c write (iout,*) "ene_iex_iex",remd_ene(0,iex) c write (iout,*) "i",i," iex",iex co write (iout,'(4(a,e15.5))') "ene_i_i",ene_i_i, co & " ene_i_iex",ene_i_iex, co & " ene_iex_i",ene_iex_i," ene_iex_iex",ene_iex_iex delta=(ene_iex_iex-ene_i_iex)/(Rb*remd_t_bath(iex))- & (ene_iex_i-ene_i_i)/(Rb*remd_t_bath(i)) delta=-delta c write(iout,*) 'delta',delta c delta=(remd_t_bath(i)-remd_t_bath(iex))* c & (remd_ene(i)-remd_ene(iex))/Rb/ c & (remd_t_bath(i)*remd_t_bath(iex)) endif if (delta .gt. 50.0d0) then delta=0.0d0 else #ifdef OSF if(isnan(delta))then delta=0.0d0 else if (delta.lt.-50.0d0) then delta=dexp(50.0d0) else delta=dexp(-delta) endif #else delta=dexp(-delta) #endif endif iremd_tot(int(i2rep(i-1)))=iremd_tot(int(i2rep(i-1)))+1 xxx=ran_number(0.0d0,1.0d0) co write(iout,'(2i4,a6,2f12.5)') i,iex,' delta',delta,xxx if (delta .gt. xxx) then tmp=remd_t_bath(i) remd_t_bath(i)=remd_t_bath(iex) remd_t_bath(iex)=tmp remd_ene(0,i)=ene_i_iex remd_ene(0,iex)=ene_iex_i if(lmuca) then tmp=elowi(i) elowi(i)=elowi(iex) elowi(iex)=tmp tmp=ehighi(i) ehighi(i)=ehighi(iex) ehighi(iex)=tmp endif do k=0,nodes itmp=nupa(k,i) nupa(k,i)=nupa(k,iex) nupa(k,iex)=itmp itmp=ndowna(k,i) ndowna(k,i)=ndowna(k,iex) ndowna(k,iex)=itmp enddo do il=1,nodes if (ifirst(il).eq.i) ifirst(il)=iex do k=1,nupa(0,il) if (nupa(k,il).eq.i) then nupa(k,il)=iex elseif (nupa(k,il).eq.iex) then nupa(k,il)=i endif enddo do k=1,ndowna(0,il) if (ndowna(k,il).eq.i) then ndowna(k,il)=iex elseif (ndowna(k,il).eq.iex) then ndowna(k,il)=i endif enddo enddo iremd_acc(int(i2rep(i-1)))=iremd_acc(int(i2rep(i-1)))+1 itmp=i2rep(i-1) i2rep(i-1)=i2rep(iex-1) i2rep(iex-1)=itmp cd write(iout,*) 'exchange',i,iex cd write (iout,'(a8,100i4)') "@ ifirst", cd & (ifirst(k),k=1,remd_m(1)) cd do il=1,nodes cd write (iout,'(a8,i4,a1,100i4)') "@ nupa",il,":", cd & (nupa(k,il),k=1,nupa(0,il)) cd write (iout,'(a8,i4,a1,100i4)') "@ ndowna",il,":", cd & (ndowna(k,il),k=1,ndowna(0,il)) cd enddo else remd_ene(0,iex)=ene_iex_iex remd_ene(0,i)=ene_i_i i=iex endif endif enddo enddo c------------------------------------- do i=1,nrep if(iremd_tot(i).ne.0) & write(iout,'(a3,i4,2f12.5)') 'ACC',i,remd_t(i) & ,iremd_acc(i)/(1.0*iremd_tot(i)) enddo cd write (iout,'(a6,100i4)') "ifirst", cd & (ifirst(i),i=1,remd_m(1)) cd do il=1,nodes cd write (iout,'(a5,i4,a1,100i4)') "nup",il,":", cd & (nupa(i,il),i=1,nupa(0,il)) cd write (iout,'(a5,i4,a1,100i4)') "ndown",il,":", cd & (ndowna(i,il),i=1,ndowna(0,il)) cd enddo endif time06=MPI_WTIME() call mpi_scatter(remd_t_bath,1,mpi_double_precision, & t_bath,1,mpi_double_precision,king, & mpi_comm_world,ierr) time07=MPI_WTIME() if (me.eq.king .or. .not. out1file) then write(iout,*) 'REMD scatter time=',time07-time06 endif if(lmuca) then call mpi_scatter(elowi,1,mpi_double_precision, & elow,1,mpi_double_precision,king, & mpi_comm_world,ierr) call mpi_scatter(ehighi,1,mpi_double_precision, & ehigh,1,mpi_double_precision,king, & mpi_comm_world,ierr) endif call rescale_weights(t_bath) co write (iout,*) "Processor",me, co & " rescaling weights with temperature",t_bath stdfp=dsqrt(2*Rb*t_bath/d_time) do i=1,ntyp stdfsc(i)=dsqrt(2*Rb*t_bath/d_time) enddo cde write(iout,*) 'REMD after',me,t_bath time08=MPI_WTIME() if (me.eq.king .or. .not. out1file) then write(iout,*) 'REMD exchange time=',time08-time00 call flush(iout) endif endif enddo if (restart1file) then if (me.eq.king .or. .not. out1file) & write(iout,*) 'writing restart at the end of run' call write1rst endif if (traj1file) call write1traj t_MD=tcpu()-tt0 if (me.eq.king .or. .not. out1file) then write (iout,'(//35(1h=),a10,35(1h=)/10(/a40,1pe15.5))') & ' Timing ', & 'MD calculations setup:',t_MDsetup, & 'Energy & gradient evaluation:',t_enegrad, & 'Stochastic MD setup:',t_langsetup, & 'Stochastic MD step setup:',t_sdsetup, & 'MD steps:',t_MD write (iout,'(/28(1h=),a25,27(1h=))') & ' End of MD calculation ' endif return end subroutine write1rst_ implicit real*8 (a-h,o-z) include 'DIMENSIONS' include 'mpif.h' include 'COMMON.MD' include 'COMMON.IOUNITS' include 'COMMON.REMD' include 'COMMON.SETUP' include 'COMMON.CHAIN' include 'COMMON.SBRIDGE' include 'COMMON.INTERACT' real d_restart1(3,2*maxres*maxprocs),r_d(3,2*maxres), & d_restart2(3,2*maxres*maxprocs) real t5_restart1(5) integer iret,itmp t5_restart1(1)=totT t5_restart1(2)=EK t5_restart1(3)=potE t5_restart1(4)=t_bath t5_restart1(5)=Uconst call mpi_gather(t5_restart1,5,mpi_real, & t_restart1,5,mpi_real,king,mpi_comm_world,ierr) do i=1,2*nres do j=1,3 r_d(j,i)=d_t(j,i) enddo enddo call mpi_gather(r_d,3*2*nres,mpi_real, & d_restart1,3*2*nres,mpi_real,king, & mpi_comm_world,ierr) do i=1,2*nres do j=1,3 r_d(j,i)=dc(j,i) enddo enddo call mpi_gather(r_d,3*2*nres,mpi_real, & d_restart2,3*2*nres,mpi_real,king, & mpi_comm_world,ierr) if(me.eq.king) then open(irest1,file=mremd_rst_name,status='unknown') write (irest1,*) (i2rep(i),i=0,nodes-1) write (irest1,*) (ifirst(i),i=1,remd_m(1)) do il=1,nodes write (irest1,*) nupa(0,il),(nupa(i,il),i=1,nupa(0,il)) write (irest1,*) ndowna(0,il), & (ndowna(i,il),i=1,ndowna(0,il)) enddo do il=1,nodes write(irest1,*) (t_restart1(j,il),j=1,4) enddo do il=0,nodes-1 do i=1,2*nres write(irest1,'(3e15.5)') (d_restart1(j,i+2*nres*il),j=1,3) enddo enddo do il=0,nodes-1 do i=1,2*nres write(irest1,'(3e15.5)') (d_restart2(j,i+2*nres*il),j=1,3) enddo enddo close(irest1) endif return end subroutine write1rst implicit real*8 (a-h,o-z) include 'DIMENSIONS' include 'mpif.h' include 'COMMON.MD' include 'COMMON.IOUNITS' include 'COMMON.REMD' include 'COMMON.SETUP' include 'COMMON.CHAIN' include 'COMMON.SBRIDGE' include 'COMMON.INTERACT' real d_restart1(3,2*maxres*maxprocs),r_d(3,2*maxres), & d_restart2(3,2*maxres*maxprocs) real t5_restart1(5) integer iret,itmp t5_restart1(1)=totT t5_restart1(2)=EK t5_restart1(3)=potE t5_restart1(4)=t_bath t5_restart1(5)=Uconst call mpi_gather(t5_restart1,5,mpi_real, & t_restart1,5,mpi_real,king,mpi_comm_world,ierr) do i=1,2*nres do j=1,3 r_d(j,i)=d_t(j,i) enddo enddo call mpi_gather(r_d,3*2*nres,mpi_real, & d_restart1,3*2*nres,mpi_real,king, & mpi_comm_world,ierr) do i=1,2*nres do j=1,3 r_d(j,i)=dc(j,i) enddo enddo call mpi_gather(r_d,3*2*nres,mpi_real, & d_restart2,3*2*nres,mpi_real,king, & mpi_comm_world,ierr) if(me.eq.king) then c open(irest1,file=mremd_rst_name,status='unknown') call xdrfopen(ixdrf,mremd_rst_name, "w", iret) c write (irest1,*) (i2rep(i),i=0,nodes-1) do i=0,nodes-1 call xdrfint(ixdrf, i2rep(i), iret) enddo c write (irest1,*) (ifirst(i),i=1,remd_m(1)) do i=1,remd_m(1) call xdrfint(ixdrf, ifirst(i), iret) enddo do il=1,nodes c write (irest1,*) nupa(0,il),(nupa(i,il),i=1,nupa(0,il)) do i=0,nupa(0,il) call xdrfint(ixdrf, nupa(i,il), iret) enddo c write (irest1,*) ndowna(0,il), c & (ndowna(i,il),i=1,ndowna(0,il)) do i=0,ndowna(0,il) call xdrfint(ixdrf, ndowna(i,il), iret) enddo enddo do il=1,nodes c write(irest1,*) (t_restart1(j,il),j=1,4) do j=1,4 call xdrffloat(ixdrf, t_restart1(j,il), iret) enddo enddo do il=0,nodes-1 do i=1,2*nres c write(irest1,'(3e15.5)') (d_restart1(j,i+2*nres*il),j=1,3) do j=1,3 call xdrffloat(ixdrf, d_restart1(j,i+2*nres*il), iret) enddo enddo enddo do il=0,nodes-1 do i=1,2*nres c write(irest1,'(3e15.5)') (d_restart2(j,i+2*nres*il),j=1,3) do j=1,3 call xdrffloat(ixdrf, d_restart2(j,i+2*nres*il), iret) enddo enddo enddo c close(irest1) call xdrfclose(ixdrf, iret) endif return end subroutine write1traj implicit real*8 (a-h,o-z) include 'DIMENSIONS' include 'mpif.h' include 'COMMON.MD' include 'COMMON.IOUNITS' include 'COMMON.REMD' include 'COMMON.SETUP' include 'COMMON.CHAIN' include 'COMMON.SBRIDGE' include 'COMMON.INTERACT' real t5_restart1(5) integer iret,itmp real xcoord(3,maxres2+2),prec real r_qfrag(50),r_qpair(100) real p_qfrag(50*maxprocs),p_qpair(100*maxprocs) real p_c(3,(maxres2+2)*maxprocs),r_c(3,maxres2+2) call mpi_bcast(ii_write,1,mpi_integer, & king,mpi_comm_world,ierr) print *,'traj1file',me,ii_write,ntwx_cache if(me.eq.king) call xdrfopen(ixdrf,cartname, "a", iret) do ii=1,ii_write t5_restart1(1)=totT_cache(ii) t5_restart1(2)=EK_cache(ii) t5_restart1(3)=potE_cache(ii) t5_restart1(4)=t_bath_cache(ii) t5_restart1(5)=Uconst_cache(ii) call mpi_gather(t5_restart1,5,mpi_real, & t_restart1,5,mpi_real,king,mpi_comm_world,ierr) do i=1,nfrag r_qfrag(i)=qfrag_cache(i,ii) enddo do i=1,npair r_qpair(i)=qpair_cache(i,ii) enddo call mpi_gather(r_qfrag,nfrag,mpi_real, & p_qfrag,nfrag,mpi_real,king, & mpi_comm_world,ierr) call mpi_gather(r_qpair,npair,mpi_real, & p_qpair,npair,mpi_real,king, & mpi_comm_world,ierr) do i=1,nres*2 do j=1,3 r_c(j,i)=c_cache(j,i,ii) enddo enddo call mpi_gather(r_c,3*2*nres,mpi_real, & p_c,3*2*nres,mpi_real,king, & mpi_comm_world,ierr) if(me.eq.king) then do il=1,nodes call xdrffloat(ixdrf, real(t_restart1(1,il)), iret) call xdrffloat(ixdrf, real(t_restart1(3,il)), iret) call xdrffloat(ixdrf, real(t_restart1(5,il)), iret) call xdrffloat(ixdrf, real(t_restart1(4,il)), iret) call xdrfint(ixdrf, nss, iret) do j=1,nss call xdrfint(ixdrf, ihpb(j), iret) call xdrfint(ixdrf, jhpb(j), iret) enddo call xdrfint(ixdrf, nfrag+npair, iret) do i=1,nfrag call xdrffloat(ixdrf, p_qfrag(i+(il-1)*nfrag), iret) enddo do i=1,npair call xdrffloat(ixdrf, p_qpair(i+(il-1)*npair), iret) enddo prec=10000.0 do i=1,nres do j=1,3 xcoord(j,i)=p_c(j,i+(il-1)*nres*2) enddo enddo do i=nnt,nct do j=1,3 xcoord(j,nres+i-nnt+1)=p_c(j,i+nres+(il-1)*nres*2) enddo enddo itmp=nres+nct-nnt+1 call xdrf3dfcoord(ixdrf, xcoord, itmp, prec, iret) enddo endif enddo if(me.eq.king) call xdrfclose(ixdrf, iret) do i=1,ntwx_cache-ii_write totT_cache(i)=totT_cache(ii_write+i) EK_cache(i)=EK_cache(ii_write+i) potE_cache(i)=potE_cache(ii_write+i) t_bath_cache(i)=t_bath_cache(ii_write+i) Uconst_cache(i)=Uconst_cache(ii_write+i) do ii=1,nfrag qfrag_cache(ii,i)=qfrag_cache(ii,ii_write+i) enddo do ii=1,npair qpair_cache(ii,i)=qpair_cache(ii,ii_write+i) enddo do ii=1,nres*2 do j=1,3 c_cache(j,ii,i)=c_cache(j,ii,ii_write+i) enddo enddo enddo ntwx_cache=ntwx_cache-ii_write return end subroutine read1restart implicit real*8 (a-h,o-z) include 'DIMENSIONS' include 'mpif.h' include 'COMMON.MD' include 'COMMON.IOUNITS' include 'COMMON.REMD' include 'COMMON.SETUP' include 'COMMON.CHAIN' include 'COMMON.SBRIDGE' include 'COMMON.INTERACT' real d_restart1(3,2*maxres*maxprocs),r_d(3,2*maxres), & t5_restart1(5) if(me.eq.king)then open(irest2,file=mremd_rst_name,status='unknown') read(irest2,*,err=334) i write(iout,*) "Reading old rst in ASCI format" close(irest2) call read1restart_old return 334 continue call xdrfopen(ixdrf,mremd_rst_name, "r", iret) c read (irest2,*) (i2rep(i),i=0,nodes-1) do i=0,nodes-1 call xdrfint(ixdrf, i2rep(i), iret) enddo c read (irest2,*) (ifirst(i),i=1,remd_m(1)) do i=1,remd_m(1) call xdrfint(ixdrf, ifirst(i), iret) enddo do il=1,nodes c read (irest2,*) nupa(0,il),(nupa(i,il),i=1,nupa(0,il)) call xdrfint(ixdrf, nupa(0,il), iret) do i=1,nupa(0,il) call xdrfint(ixdrf, nupa(i,il), iret) enddo c read (irest2,*) ndowna(0,il), c & (ndowna(i,il),i=1,ndowna(0,il)) call xdrfint(ixdrf, ndowna(0,il), iret) do i=1,ndowna(0,il) call xdrfint(ixdrf, ndowna(i,il), iret) enddo enddo do il=1,nodes c read(irest2,*) (t_restart1(j,il),j=1,4) do j=1,4 call xdrffloat(ixdrf, t_restart1(j,il), iret) enddo enddo endif call mpi_scatter(t_restart1,5,mpi_real, & t5_restart1,5,mpi_real,king,mpi_comm_world,ierr) totT=t5_restart1(1) EK=t5_restart1(2) potE=t5_restart1(3) t_bath=t5_restart1(4) if(me.eq.king)then do il=0,nodes-1 do i=1,2*nres c read(irest2,'(3e15.5)') c & (d_restart1(j,i+2*nres*il),j=1,3) do j=1,3 call xdrffloat(ixdrf, d_restart1(j,i+2*nres*il), iret) enddo enddo enddo endif call mpi_scatter(d_restart1,3*2*nres,mpi_real, & r_d,3*2*nres,mpi_real,king,mpi_comm_world,ierr) do i=1,2*nres do j=1,3 d_t(j,i)=r_d(j,i) enddo enddo if(me.eq.king)then do il=0,nodes-1 do i=1,2*nres c read(irest2,'(3e15.5)') c & (d_restart1(j,i+2*nres*il),j=1,3) do j=1,3 call xdrffloat(ixdrf, d_restart1(j,i+2*nres*il), iret) enddo enddo enddo endif call mpi_scatter(d_restart1,3*2*nres,mpi_real, & r_d,3*2*nres,mpi_real,king,mpi_comm_world,ierr) do i=1,2*nres do j=1,3 dc(j,i)=r_d(j,i) enddo enddo if(me.eq.king) close(irest2) return end subroutine read1restart_old implicit real*8 (a-h,o-z) include 'DIMENSIONS' include 'mpif.h' include 'COMMON.MD' include 'COMMON.IOUNITS' include 'COMMON.REMD' include 'COMMON.SETUP' include 'COMMON.CHAIN' include 'COMMON.SBRIDGE' include 'COMMON.INTERACT' real d_restart1(3,2*maxres*maxprocs),r_d(3,2*maxres), & t5_restart1(5) if(me.eq.king)then open(irest2,file=mremd_rst_name,status='unknown') read (irest2,*) (i2rep(i),i=0,nodes-1) read (irest2,*) (ifirst(i),i=1,remd_m(1)) do il=1,nodes read (irest2,*) nupa(0,il),(nupa(i,il),i=1,nupa(0,il)) read (irest2,*) ndowna(0,il), & (ndowna(i,il),i=1,ndowna(0,il)) enddo do il=1,nodes read(irest2,*) (t_restart1(j,il),j=1,4) enddo endif call mpi_scatter(t_restart1,5,mpi_real, & t5_restart1,5,mpi_real,king,mpi_comm_world,ierr) totT=t5_restart1(1) EK=t5_restart1(2) potE=t5_restart1(3) t_bath=t5_restart1(4) if(me.eq.king)then do il=0,nodes-1 do i=1,2*nres read(irest2,'(3e15.5)') & (d_restart1(j,i+2*nres*il),j=1,3) enddo enddo endif call mpi_scatter(d_restart1,3*2*nres,mpi_real, & r_d,3*2*nres,mpi_real,king,mpi_comm_world,ierr) do i=1,2*nres do j=1,3 d_t(j,i)=r_d(j,i) enddo enddo if(me.eq.king)then do il=0,nodes-1 do i=1,2*nres read(irest2,'(3e15.5)') & (d_restart1(j,i+2*nres*il),j=1,3) enddo enddo endif call mpi_scatter(d_restart1,3*2*nres,mpi_real, & r_d,3*2*nres,mpi_real,king,mpi_comm_world,ierr) do i=1,2*nres do j=1,3 dc(j,i)=r_d(j,i) enddo enddo if(me.eq.king) close(irest2) return end