subroutine make_SCSC_inter_list implicit none include "DIMENSIONS" #ifdef MPI include 'mpif.h' include "COMMON.SETUP" #endif include "COMMON.CHAIN" include "COMMON.INTERACT" include "COMMON.SPLITELE" include "COMMON.IOUNITS" double precision xi,yi,zi,xj,yj,zj,xj_safe,yj_safe,zj_safe, & xj_temp,yj_temp,zj_temp double precision dist_init, dist_temp,r_buff_list integer contlisti(200*maxres),contlistj(200*maxres) ! integer :: newcontlisti(200*nres),newcontlistj(200*nres) integer i,j,itypi,itypj,subchap,xshift,yshift,zshift,iint, & ilist_sc,g_ilist_sc integer displ(0:max_fg_procs),i_ilist_sc(0:max_fg_procs),ierr ! print *,"START make_SC" #ifdef DEBUG write (iout,*) "make_SCSC_inter_list" #endif r_buff_list=5.0d0 ilist_sc=0 do i=iatsc_s,iatsc_e itypi=iabs(itype(i)) if (itypi.eq.ntyp1) cycle xi=c(1,nres+i) yi=c(2,nres+i) zi=c(3,nres+i) xi=dmod(xi,boxxsize) if (xi.lt.0) xi=xi+boxxsize yi=dmod(yi,boxysize) if (yi.lt.0) yi=yi+boxysize zi=dmod(zi,boxzsize) if (zi.lt.0) zi=zi+boxzsize do iint=1,nint_gr(i) do j=istart(i,iint),iend(i,iint) itypj=iabs(itype(j)) if (itypj.eq.ntyp1) cycle xj=c(1,nres+j) yj=c(2,nres+j) zj=c(3,nres+j) xj=dmod(xj,boxxsize) if (xj.lt.0) xj=xj+boxxsize yj=dmod(yj,boxysize) if (yj.lt.0) yj=yj+boxysize zj=dmod(zj,boxzsize) if (zj.lt.0) zj=zj+boxzsize dist_init=(xj-xi)**2+(yj-yi)**2+(zj-zi)**2 xj_safe=xj yj_safe=yj zj_safe=zj subchap=0 do xshift=-1,1 do yshift=-1,1 do zshift=-1,1 xj=xj_safe+xshift*boxxsize yj=yj_safe+yshift*boxysize zj=zj_safe+zshift*boxzsize dist_temp=(xj-xi)**2+(yj-yi)**2+(zj-zi)**2 if(dist_temp.lt.dist_init) then dist_init=dist_temp xj_temp=xj yj_temp=yj zj_temp=zj subchap=1 endif enddo enddo enddo if (subchap.eq.1) then xj=xj_temp-xi yj=yj_temp-yi zj=zj_temp-zi else xj=xj_safe-xi yj=yj_safe-yi zj=zj_safe-zi endif ! r_buff_list is a read value for a buffer if (sqrt(dist_init).le.(r_cut_int+r_buff_list)) then ! Here the list is created ilist_sc=ilist_sc+1 ! this can be substituted by cantor and anti-cantor contlisti(ilist_sc)=i contlistj(ilist_sc)=j endif enddo enddo enddo ! call MPI_Reduce(ilist_sc,g_ilist_sc,1,& ! MPI_INTEGER,MPI_SUM,king,FG_COMM,IERR) ! call MPI_Gather(newnss,1,MPI_INTEGER,& ! i_newnss,1,MPI_INTEGER,king,FG_COMM,IERR) #ifdef MPI #ifdef DEBUG write (iout,*) "before MPIREDUCE",ilist_sc do i=1,ilist_sc write (iout,*) i,contlisti(i),contlistj(i) enddo #endif if (nfgtasks.gt.1)then call MPI_Reduce(ilist_sc,g_ilist_sc,1, & MPI_INTEGER,MPI_SUM,king,FG_COMM,IERR) c write(iout,*) "before bcast",g_ilist_sc call MPI_Gather(ilist_sc,1,MPI_INTEGER, & i_ilist_sc,1,MPI_INTEGER,king,FG_COMM,IERR) displ(0)=0 do i=1,nfgtasks-1,1 displ(i)=i_ilist_sc(i-1)+displ(i-1) enddo ! write(iout,*) "before gather",displ(0),displ(1) call MPI_Gatherv(contlisti,ilist_sc,MPI_INTEGER, & newcontlisti,i_ilist_sc,displ,MPI_INTEGER, & king,FG_COMM,IERR) call MPI_Gatherv(contlistj,ilist_sc,MPI_INTEGER, & newcontlistj,i_ilist_sc,displ,MPI_INTEGER, & king,FG_COMM,IERR) call MPI_Bcast(g_ilist_sc,1,MPI_INT,king,FG_COMM,IERR) ! write(iout,*) "before bcast",g_ilist_sc ! call MPI_Bcast(g_ilist_sc,1,MPI_INT,king,FG_COMM) call MPI_Bcast(newcontlisti,g_ilist_sc,MPI_INT,king,FG_COMM, & IERR) call MPI_Bcast(newcontlistj,g_ilist_sc,MPI_INT,king,FG_COMM, & IERR) ! call MPI_Bcast(g_ilist_sc,1,MPI_INT,king,FG_COMM) else #endif g_ilist_sc=ilist_sc do i=1,ilist_sc newcontlisti(i)=contlisti(i) newcontlistj(i)=contlistj(i) enddo #ifdef MPI endif #endif #ifdef DEBUG write (iout,*) "after GATHERV",g_ilist_sc do i=1,g_ilist_sc write (iout,*) i,newcontlisti(i),newcontlistj(i) enddo #endif call int_bounds(g_ilist_sc,g_listscsc_start,g_listscsc_end) return end !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! subroutine make_SCp_inter_list implicit none include "DIMENSIONS" #ifdef MPI include 'mpif.h' include "COMMON.SETUP" #endif include "COMMON.CHAIN" include "COMMON.INTERACT" include "COMMON.SPLITELE" include "COMMON.IOUNITS" double precision xi,yi,zi,xj,yj,zj,xj_safe,yj_safe,zj_safe, & xj_temp,yj_temp,zj_temp double precision dist_init, dist_temp,r_buff_list integer contlistscpi(200*maxres),contlistscpj(200*maxres) ! integer :: newcontlistscpi(200*nres),newcontlistscpj(200*nres) integer i,j,itypi,itypj,subchap,xshift,yshift,zshift,iint, & ilist_scp,g_ilist_scp integer displ(0:max_fg_procs),i_ilist_scp(0:max_fg_procs),ierr integer contlistscpi_f(200*maxres),contlistscpj_f(200*maxres) integer ilist_scp_first,ifirstrun,g_ilist_sc ! print *,"START make_SC" #ifdef DEBUG write (iout,*) "make_SCp_inter_list" #endif r_buff_list=5.0 ilist_scp=0 ilist_scp_first=0 do i=iatscp_s,iatscp_e if (itype(i).eq.ntyp1 .or. itype(i+1).eq.ntyp1) cycle xi=0.5D0*(c(1,i)+c(1,i+1)) yi=0.5D0*(c(2,i)+c(2,i+1)) zi=0.5D0*(c(3,i)+c(3,i+1)) xi=mod(xi,boxxsize) if (xi.lt.0) xi=xi+boxxsize yi=mod(yi,boxysize) if (yi.lt.0) yi=yi+boxysize zi=mod(zi,boxzsize) if (zi.lt.0) zi=zi+boxzsize do iint=1,nscp_gr(i) do j=iscpstart(i,iint),iscpend(i,iint) itypj=iabs(itype(j)) if (itypj.eq.ntyp1) cycle ! Uncomment following three lines for SC-p interactions ! xj=c(1,nres+j)-xi ! yj=c(2,nres+j)-yi ! zj=c(3,nres+j)-zi ! Uncomment following three lines for Ca-p interactions ! xj=c(1,j)-xi ! yj=c(2,j)-yi ! zj=c(3,j)-zi xj=c(1,j) yj=c(2,j) zj=c(3,j) xj=mod(xj,boxxsize) if (xj.lt.0) xj=xj+boxxsize yj=mod(yj,boxysize) if (yj.lt.0) yj=yj+boxysize zj=mod(zj,boxzsize) if (zj.lt.0) zj=zj+boxzsize dist_init=(xj-xi)**2+(yj-yi)**2+(zj-zi)**2 xj_safe=xj yj_safe=yj zj_safe=zj subchap=0 do xshift=-1,1 do yshift=-1,1 do zshift=-1,1 xj=xj_safe+xshift*boxxsize yj=yj_safe+yshift*boxysize zj=zj_safe+zshift*boxzsize dist_temp=(xj-xi)**2+(yj-yi)**2+(zj-zi)**2 if(dist_temp.lt.dist_init) then dist_init=dist_temp xj_temp=xj yj_temp=yj zj_temp=zj subchap=1 endif enddo enddo enddo if (subchap.eq.1) then xj=xj_temp-xi yj=yj_temp-yi zj=zj_temp-zi else xj=xj_safe-xi yj=yj_safe-yi zj=zj_safe-zi endif #ifdef DEBUG ! r_buff_list is a read value for a buffer if ((sqrt(dist_init).le.(r_cut_int)).and.(ifirstrun.eq.0)) & then ! Here the list is created ilist_scp_first=ilist_scp_first+1 ! this can be substituted by cantor and anti-cantor contlistscpi_f(ilist_scp_first)=i contlistscpj_f(ilist_scp_first)=j endif #endif ! r_buff_list is a read value for a buffer if (sqrt(dist_init).le.(r_cut_int+r_buff_list)) then ! Here the list is created ilist_scp=ilist_scp+1 ! this can be substituted by cantor and anti-cantor contlistscpi(ilist_scp)=i contlistscpj(ilist_scp)=j endif enddo enddo enddo #ifdef MPI #ifdef DEBUG write (iout,*) "before MPIREDUCE",ilist_scp do i=1,ilist_scp write (iout,*) i,contlistscpi(i),contlistscpj(i) enddo #endif if (nfgtasks.gt.1)then call MPI_Reduce(ilist_scp,g_ilist_scp,1, & MPI_INTEGER,MPI_SUM,king,FG_COMM,IERR) c write(iout,*) "before bcast",g_ilist_sc call MPI_Gather(ilist_scp,1,MPI_INTEGER, & i_ilist_scp,1,MPI_INTEGER,king,FG_COMM,IERR) displ(0)=0 do i=1,nfgtasks-1,1 displ(i)=i_ilist_scp(i-1)+displ(i-1) enddo ! write(iout,*) "before gather",displ(0),displ(1) call MPI_Gatherv(contlistscpi,ilist_scp,MPI_INTEGER, & newcontlistscpi,i_ilist_scp,displ,MPI_INTEGER, & king,FG_COMM,IERR) call MPI_Gatherv(contlistscpj,ilist_scp,MPI_INTEGER, & newcontlistscpj,i_ilist_scp,displ,MPI_INTEGER, & king,FG_COMM,IERR) call MPI_Bcast(g_ilist_scp,1,MPI_INT,king,FG_COMM,IERR) ! write(iout,*) "before bcast",g_ilist_sc ! call MPI_Bcast(g_ilist_sc,1,MPI_INT,king,FG_COMM) call MPI_Bcast(newcontlistscpi,g_ilist_scp,MPI_INT,king,FG_COMM, & IERR) call MPI_Bcast(newcontlistscpj,g_ilist_scp,MPI_INT,king,FG_COMM, & IERR) ! call MPI_Bcast(g_ilist_sc,1,MPI_INT,king,FG_COMM) else #endif g_ilist_scp=ilist_scp do i=1,ilist_scp newcontlistscpi(i)=contlistscpi(i) newcontlistscpj(i)=contlistscpj(i) enddo #ifdef MPI endif #endif #ifdef DEBUG write (iout,*) "after MPIREDUCE",g_ilist_scp do i=1,g_ilist_scp write (iout,*) i,newcontlistscpi(i),newcontlistscpj(i) enddo ! if (ifirstrun.eq.0) ifirstrun=1 ! do i=1,ilist_scp_first ! do j=1,g_ilist_scp ! if ((newcontlistscpi(j).eq.contlistscpi_f(i)).and.& ! (newcontlistscpj(j).eq.contlistscpj_f(i))) go to 126 ! enddo ! print *,itime_mat,"ERROR matrix needs updating" ! print *,contlistscpi_f(i),contlistscpj_f(i) ! 126 continue ! enddo #endif call int_bounds(g_ilist_scp,g_listscp_start,g_listscp_end) return end !----------------------------------------------------------------------------- subroutine make_pp_inter_list implicit none include "DIMENSIONS" #ifdef MPI include 'mpif.h' include "COMMON.SETUP" #endif include "COMMON.CHAIN" include "COMMON.INTERACT" include "COMMON.SPLITELE" include "COMMON.IOUNITS" double precision xi,yi,zi,xj,yj,zj,xj_safe,yj_safe,zj_safe, & xj_temp,yj_temp,zj_temp double precision xmedj,ymedj,zmedj double precision dist_init, dist_temp,r_buff_list,dxi,dyi,dzi, & xmedi,ymedi,zmedi double precision dx_normi,dy_normi,dz_normi,dxj,dyj,dzj, & dx_normj,dy_normj,dz_normj integer contlistppi(200*maxres),contlistppj(200*maxres) ! integer :: newcontlistppi(200*nres),newcontlistppj(200*nres) integer i,j,itypi,itypj,subchap,xshift,yshift,zshift,iint, & ilist_pp,g_ilist_pp integer displ(0:max_fg_procs),i_ilist_pp(0:max_fg_procs),ierr ! print *,"START make_SC" #ifdef DEBUG write (iout,*) "make_pp_inter_list" #endif ilist_pp=0 r_buff_list=5.0 do i=iatel_s,iatel_e if (itype(i).eq.ntyp1 .or. itype(i+1).eq.ntyp1) cycle dxi=dc(1,i) dyi=dc(2,i) dzi=dc(3,i) dx_normi=dc_norm(1,i) dy_normi=dc_norm(2,i) dz_normi=dc_norm(3,i) xmedi=c(1,i)+0.5d0*dxi ymedi=c(2,i)+0.5d0*dyi zmedi=c(3,i)+0.5d0*dzi xmedi=dmod(xmedi,boxxsize) if (xmedi.lt.0) xmedi=xmedi+boxxsize ymedi=dmod(ymedi,boxysize) if (ymedi.lt.0) ymedi=ymedi+boxysize zmedi=dmod(zmedi,boxzsize) if (zmedi.lt.0) zmedi=zmedi+boxzsize do j=ielstart(i),ielend(i) ! write (iout,*) i,j,itype(i),itype(j) if (itype(j).eq.ntyp1.or. itype(j+1).eq.ntyp1) cycle ! 1,j) dxj=dc(1,j) dyj=dc(2,j) dzj=dc(3,j) dx_normj=dc_norm(1,j) dy_normj=dc_norm(2,j) dz_normj=dc_norm(3,j) ! xj=c(1,j)+0.5D0*dxj-xmedi ! yj=c(2,j)+0.5D0*dyj-ymedi ! zj=c(3,j)+0.5D0*dzj-zmedi xj=c(1,j)+0.5D0*dxj yj=c(2,j)+0.5D0*dyj zj=c(3,j)+0.5D0*dzj xj=mod(xj,boxxsize) if (xj.lt.0) xj=xj+boxxsize yj=mod(yj,boxysize) if (yj.lt.0) yj=yj+boxysize zj=mod(zj,boxzsize) if (zj.lt.0) zj=zj+boxzsize dist_init=(xj-xmedi)**2+(yj-ymedi)**2+(zj-zmedi)**2 xj_safe=xj yj_safe=yj zj_safe=zj do xshift=-1,1 do yshift=-1,1 do zshift=-1,1 xj=xj_safe+xshift*boxxsize yj=yj_safe+yshift*boxysize zj=zj_safe+zshift*boxzsize dist_temp=(xj-xmedi)**2+(yj-ymedi)**2+(zj-zmedi)**2 if(dist_temp.lt.dist_init) then dist_init=dist_temp xj_temp=xj yj_temp=yj zj_temp=zj endif enddo enddo enddo if (sqrt(dist_init).le.(r_cut_int+r_buff_list)) then ! Here the list is created ilist_pp=ilist_pp+1 ! this can be substituted by cantor and anti-cantor contlistppi(ilist_pp)=i contlistppj(ilist_pp)=j endif enddo enddo ! enddo #ifdef MPI #ifdef DEBUG write (iout,*) "before MPIREDUCE",ilist_pp do i=1,ilist_pp write (iout,*) i,contlistppi(i),contlistppj(i) enddo #endif if (nfgtasks.gt.1)then call MPI_Reduce(ilist_pp,g_ilist_pp,1, & MPI_INTEGER,MPI_SUM,king,FG_COMM,IERR) ! write(iout,*) "before bcast",g_ilist_sc call MPI_Gather(ilist_pp,1,MPI_INTEGER, & i_ilist_pp,1,MPI_INTEGER,king,FG_COMM,IERR) displ(0)=0 do i=1,nfgtasks-1,1 displ(i)=i_ilist_pp(i-1)+displ(i-1) enddo ! write(iout,*) "before gather",displ(0),displ(1) call MPI_Gatherv(contlistppi,ilist_pp,MPI_INTEGER, & newcontlistppi,i_ilist_pp,displ,MPI_INTEGER, & king,FG_COMM,IERR) call MPI_Gatherv(contlistppj,ilist_pp,MPI_INTEGER, & newcontlistppj,i_ilist_pp,displ,MPI_INTEGER, & king,FG_COMM,IERR) call MPI_Bcast(g_ilist_pp,1,MPI_INT,king,FG_COMM,IERR) ! write(iout,*) "before bcast",g_ilist_sc ! call MPI_Bcast(g_ilist_sc,1,MPI_INT,king,FG_COMM) call MPI_Bcast(newcontlistppi,g_ilist_pp,MPI_INT,king,FG_COMM, & IERR) call MPI_Bcast(newcontlistppj,g_ilist_pp,MPI_INT,king,FG_COMM, & IERR) ! call MPI_Bcast(g_ilist_sc,1,MPI_INT,king,FG_COMM) else #endif g_ilist_pp=ilist_pp do i=1,ilist_pp newcontlistppi(i)=contlistppi(i) newcontlistppj(i)=contlistppj(i) enddo #ifdef MPI endif #endif call int_bounds(g_ilist_pp,g_listpp_start,g_listpp_end) #ifdef DEBUG write (iout,*) "after MPIREDUCE",g_ilist_pp do i=1,g_ilist_pp write (iout,*) i,newcontlistppi(i),newcontlistppj(i) enddo #endif return end