# # CMake project file for cluster analysis from WHAM for oligomeric proteins # enable_language (Fortran) #================================ # Set source file lists #================================ set(UNRES_CLUSTER_WHAM_M_SRC0 arcos.f cartprint.f chainbuild.f contact.f convert.f energy_p_new.F fitsq.f geomout.F gnmr1.f hc.f icant.f initialize_p.F intcor.f int_from_cart1.f main_clust.F matmult.f misc.f noyes.f parmread.F permut.f pinorm.f printmat.f probabl.F read_coords.F readpdb.f readrtns.F rescode.f setup_var.f srtclust.f timing.F track.F wrtclust.f work_partition.F ) set(UNRES_CLUSTER_WHAM_M_PP_SRC energy_p_new.F initialize_p.F geomout.F main_clust.F parmread.F probabl.F read_coords.F readrtns.F timing.F track.F work_partition.F proc_proc.c ) #================================================ # Set comipiler flags for different sourcefiles #================================================ if (Fortran_COMPILER_NAME STREQUAL "ifort") set(FFLAGS0 "-ip -w -I. -I${CMAKE_CURRENT_SOURCE_DIR}/include_unres " ) elseif (Fortran_COMPILER_NAME STREQUAL "gfortran") set(FFLAGS0 "-I. -I${CMAKE_CURRENT_SOURCE_DIR}/include_unres " ) endif (Fortran_COMPILER_NAME STREQUAL "ifort") # Add MPI compiler flags if(UNRES_WITH_MPI) set(FFLAGS0 "${FFLAGS0} -I${MPIF_INCLUDE_DIRECTORIES}") endif(UNRES_WITH_MPI) set_property(SOURCE ${UNRES_CLUSTER_WHAM_M_SRC0} PROPERTY COMPILE_FLAGS ${FFLAGS0} ) set(CPPFLAGS "PROCOR -DSPLITELE -DPROCOR -DCRYST_BOND -DCRYST_THETA -DCRYST_SC" ) if (Fortran_COMPILER_NAME STREQUAL "ifort") # Add ifort preprocessor flags set(CPPFLAGS "${CPPFLAGS} -DPGI") elseif (Fortran_COMPILER_NAME STREQUAL "f95") # Add new gfortran flags set(CPPFLAGS "${CPPFLAGS} -DG77") elseif (Fortran_COMPILER_NAME STREQUAL "gfortran") # Add old gfortran flags set(CPPFLAGS "${CPPFLAGS} -DG77") endif (Fortran_COMPILER_NAME STREQUAL "ifort") #========================================= # System specific flags #========================================= if(${CMAKE_SYSTEM_NAME} MATCHES "Linux") set(CPPFLAGS "${CPPFLAGS} -DLINUX") endif(${CMAKE_SYSTEM_NAME} MATCHES "Linux") #========================================= # Add MPI preprocessor flags #========================================= if (UNRES_WITH_MPI) set(CPPFLAGS "${CPPFLAGS} -DMP -DMPI") endif(UNRES_WITH_MPI) #========================================= # Apply preprocesor flags to *.F files #========================================= set_property(SOURCE ${UNRES_CLUSTER_WHAM_M_PP_SRC} PROPERTY COMPILE_DEFINITIONS ${CPPFLAGS} ) #======================================== # Setting binary name #======================================== set(UNRES_CLUSTER_WHAM_M_BIN "unres_clustMD.exe") #========================================= # cinfo.f stupid workaround for cmake # - shame on me ]:) #========================================= #set_property(SOURCE compinfo.c PROPERTY CMAKE_C_FLAGS "-c" ) #add_executable(compinfo-wham-m compinfo.c) #set_target_properties(compinfo-wham-m PROPERTIES OUTPUT_NAME compinfo) #set(UNRES_CINFO_DIR "${CMAKE_CURRENT_BINARY_DIR}" ) #add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/cinfo.f # COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_CURRENT_SOURCE_DIR}/cinfo.f ${CMAKE_CURRENT_BINARY_DIR}/cinfo.f # COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_CURRENT_SOURCE_DIR}/COMMON.IOUNITS ${CMAKE_CURRENT_BINARY_DIR}/COMMON.IOUNITS # COMMAND ${CMAKE_CURRENT_BINARY_DIR}/compinfo | true # DEPENDS compinfo-wham-m ) #set_property(SOURCE ${UNRES_CINFO_DIR}/cinfo.f PROPERTY COMPILE_FLAGS ${FFLAGS0} ) #========================================= # Set full unres CLUSTER sources #========================================= set(UNRES_CLUSTER_WHAM_M_SRCS ${UNRES_CLUSTER_WHAM_M_SRC0} ${CMAKE_CURRENT_SOURCE_DIR}/proc_proc.c) #========================================= # Build the binary #========================================= add_executable(UNRES_CLUSTER_WHAM_M_BIN ${UNRES_CLUSTER_WHAM_M_SRCS} ) set_target_properties(UNRES_CLUSTER_WHAM_M_BIN PROPERTIES OUTPUT_NAME ${UNRES_CLUSTER_WHAM_M_BIN}) #========================================= # Link libraries #========================================= # link MPI library (libmpich.a) if(UNRES_WITH_MPI) target_link_libraries( UNRES_CLUSTER_WHAM_M_BIN ${MPIF_LIBRARIES} ) endif(UNRES_WITH_MPI) # link libxdrf.a target_link_libraries( UNRES_CLUSTER_WHAM_M_BIN xdrf ) #========================================= # TESTS #========================================= #-- Copy all the data files from the test directory into the source directory #SET(UNRES_TEST_FILES # ala10.inp # ) #FOREACH (UNRES_TEST_FILE ${UNRES_TEST_FILES}) # SET (unres_test_dest "${CMAKE_CURRENT_BINARY_DIR}/${UNRES_TEST_FILE}") # MESSAGE (STATUS " Copying ${UNRES_TEST_FILE} from ${CMAKE_SOURCE_DIR}/examples/unres/MD/ff_gab/${UNRES_TEST_FILE} to ${unres_test_dest}") # ADD_CUSTOM_COMMAND ( # TARGET ${UNRES_BIN} # POST_BUILD # COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_SOURCE_DIR}/examples/unres/MD/ff_gab/${UNRES_TEST_FILE} ${unres_test_dest} # ) #ENDFOREACH (UNRES_TEST_FILE ${UNRES_TEST_FILES}) #========================================= # Generate data test files #========================================= # test_single_ala.sh #========================================= #FILE(WRITE ${CMAKE_CURRENT_BINARY_DIR}/test_single_ala.sh #"#!/bin/sh #export POT=GB #export PREFIX=ala10 #----------------------------------------------------------------------------- #UNRES_BIN=./${UNRES_BIN} #----------------------------------------------------------------------------- #DD=${CMAKE_SOURCE_DIR}/PARAM #export BONDPAR=$DD/bond.parm #export THETPAR=$DD/thetaml.5parm #export ROTPAR=$DD/scgauss.parm #export TORPAR=$DD/torsion_631Gdp.parm #export TORDPAR=$DD/torsion_double_631Gdp.parm #export ELEPAR=$DD/electr_631Gdp.parm #export SIDEPAR=$DD/sc_GB_opt.1gab_3S_qclass5no310-shan2-sc-16-10-8k #export FOURIER=$DD/fourier_opt.parm.1igd_hc_iter3_3 #export SCPPAR=$DD/scp.parm #export SCCORPAR=$DD/rotcorr_AM1.parm #export PATTERN=$DD/patterns.cart #----------------------------------------------------------------------------- #$UNRES_BIN #") #========================================= # ala10.inp #========================================= #file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/ala10.inp #"ala10 unblocked #SEED=-1111333 MD ONE_LETTER rescale_mode=2 PDBOUT #nstep=15000 ntwe=100 ntwx=1000 dt=0.1 lang=0 tbf t_bath=300 damax=1.0 & #reset_moment=1000 reset_vel=1000 MDPDB #WLONG=1.35279 WSCP=1.59304 WELEC=0.71534 WBOND=1.00000 WANG=1.13873 & #WSCLOC=0.16258 WTOR=1.98599 WTORD=1.57069 WCORRH=0.42887 WCORR5=0.00000 & #WCORR6=0.00000 WEL_LOC=0.16036 WTURN3=1.68722 WTURN4=0.66230 WTURN6=0.00000 & #WVDWPP=0.11371 WHPB=1.00000 & #CUTOFF=7.00000 WCORR4=0.00000 #12 #XAAAAAAAAAAX # 0 # 0 # 90.0000 90.0000 90.0000 90.000 90.000 90.000 90.000 90.000 # 90.0000 90.0000 # 180.0000 180.0000 180.0000 180.000 180.000 180.000 180.000 180.000 # 180.0000 # 110.0000 110.0000 110.0000 100.000 110.000 100.000 110.000 110.000 # 110.0000 110.0000 # -120.0000 -120.0000 -120.000 -120.000 -120.000 -120.000 -120.000 -120.000 # -120.0000 -120.0000 #") # Add tests #if(NOT UNRES_WITH_MPI) # add_test(NAME UNRES_MD_Ala10 COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_single_ala.sh ) #endif(NOT UNRES_WITH_MPI)