jp_fSt_H_1 : NLYIQWLKDGGPSSGRPPPS : jp_fSt_H_1
: 1---------11-------- :
OrigSeq : NLYIQWLKDGGPSSGRPPPS : OrigSeq
Jnet : --HHHHHH------------ : Jnet
jhmm : --HHHHHH------------ : jhmm
Lupas 14 : -------------------- : Lupas 14
Lupas 21 : -------------------- : Lupas 21
Lupas 28 : -------------------- : Lupas 28
Jnet_25 : -BBB-BB---B--------- : Jnet_25
Jnet_5 : ---B--B------------- : Jnet_5
Jnet_0 : -------------------- : Jnet_0
Jnet Rel : 92115553367777788899 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.