1 ********************************************************************************
2 * Settings for the program of united-residue peptide simulation in real space *
4 * ------- As of 6/23/01 ----------- *
6 ********************************************************************************
7 c implicit real*8 (a-h,o-z)
8 C Max. number of processors.
9 c parameter (maxprocs=128)
10 C Max. number of fine-grain processors
11 C parameter (max_fg_procs=maxprocs)
12 C Max. number of coarse-grain processors
13 c parameter (max_cg_procs=maxprocs)
14 C Max. number of AA residues
16 parameter (maxres=250)
17 c parameter (maxres=400)
18 C Appr. max. number of interaction sites
20 parameter (maxres2=2*maxres)
21 C Max. number of variables
23 parameter (maxvar=4*maxres)
24 C Max. number of groups of interactions that a given SC is involved in
26 parameter (maxint_gr=2)
27 C Max. number of derivatives of virtual-bond and side-chain vectors in theta
30 parameter (maxdim=(maxres-1)*(maxres-2)/2)
31 C Max. number of SC contacts
33 parameter (maxcont=12*maxres)
34 C Max. number of contacts per residue
36 parameter (maxconts=maxres)
37 C Number of AA types (at present only natural AA's will be handled
39 parameter (ntyp=20,ntyp1=ntyp+1)
41 parameter (nntyp=ntyp*(ntyp+1)/2)
42 C Max. number of types of dihedral angles & multiplicity of torsional barriers
43 C and the number of terms in double torsionals
44 integer maxtor,maxterm,maxlor,maxtermd_1,maxtermd_2
45 parameter (maxtor=4,maxterm=10,maxlor=3,maxtermd_1=8,maxtermd_2=8)
46 c Max number of torsional terms in SCCOR
48 parameter (maxterm_sccor=6)
49 C Max. number of residue types and parameters in expressions for
50 C virtual-bond angle bending potentials
51 integer maxthetyp,maxthetyp1,maxtheterm,maxtheterm2,maxtheterm3,
52 & maxsingle,maxdouble,mmaxtheterm
53 parameter (maxthetyp=3,maxthetyp1=maxthetyp+1,maxtheterm=20,
54 & maxtheterm2=6,maxtheterm3=4,maxsingle=6,maxdouble=4,
55 & mmaxtheterm=maxtheterm)
56 C Max. number of lobes in SC distribution
59 C Max. number of S-S bridges
62 C Max. number of dihedral angle constraints
64 parameter (maxdih_constr=maxres)
65 C Max. number of patterns in the pattern database
67 parameter (maxseq=1000)
68 C Max. number of residues in a peptide in the database
70 parameter (maxres_base=1000)
71 C Max. number of threading attempts
73 parameter (maxthread=2000)
74 C Max. number of move types in MCM
76 parameter (maxmovetype=4)
77 C Max. number of stored confs. in MC/MCM simulation
79 parameter (maxsave=2000)
80 C Max. number of conformations in Master's cache array
82 parameter (max_cache=1000)
83 C Max. number of conformations in the pool
85 parameter (max_pool=1000)
86 C Number of threads in deformation
87 integer max_thread,max_thread2
88 parameter (max_thread=40,max_thread2=2*max_thread)
89 C Number of steps in DSM
91 parameter (max_step=1)
92 C Number of structures to compare at t=0
93 integer max_threadss,max_threadss2
94 parameter (max_threadss=80,max_threadss2=2*max_threadss)
95 C Maxmimum number of angles per residue
98 C Maximum number of groups of angles
100 parameter (mxgr=2*maxres)
101 C Maximum number of chains
104 C Maximum number of generated conformations
106 parameter (mxio=1000)
107 C Maximum number of seed
109 parameter (max_seed=100)
110 C Maximum number of structures for ZSCORE for each protein
113 C Maximum number of structures stored for comparison for ZSCORE for each protein
116 C Maximum number of proteins for ZSCORE
118 parameter (maxprotzs=1)
119 C Maximum number of conf in rmsdbank
121 parameter (maxrmsdb=110)
122 C Maximum number of bankt conformations
124 parameter (mxiot=mxio)
125 c Maximum number of conformations in MCMF
127 parameter (maxstr_mcmf=800)
128 c Maximum number of families in MCMF
130 parameter (maxfam_p=20)
131 c Maximum number of structures in family in MCMF
133 parameter (maxstr_fam=40)
134 C Maximum number of threads in MCMF
135 integer maxthread_mcmf
136 parameter (maxthread_mcmf=10)
137 C Maximum number of SC local term fitting function coefficiants
139 parameter (maxsccoef=65)
140 C Maximum number of terms in SC bond-stretching potential
142 parameter (maxbondterm=3)
143 C Maximum number of templates in homology-modeling restraints
145 parameter(max_template=25)