source/unres/src_MD/CMakeLists.txt

   1 #
   2 # CMake project file for UNRES with MD for single chains
   3 #
   4
   5 enable_language (Fortran)
   6
   7
   8 #================================
   9 # Set source file lists
  10 #================================
  11 if(UNRES_DFA)
  12  set(UNRES_MD_SRC0
  13         add.f
  14         arcos.f
  15         banach.f
  16         blas.f
  17         bond_move.f
  18         cartder.F
  19         cartprint.f
  20         check_sc_distr.f
  21         check_bond.f
  22         chainbuild.F
  23         checkder_p.F
  24         compare_s1.F
  25         contact.f
  26         convert.f
  27         cored.f
  28         dihed_cons.F
  29         djacob.f
  30         econstr_local.F
  31         eigen.f
  32         elecont.f
  33         energy_split-sep.F
  34         entmcm.F
  35         fitsq.f
  36         gauss.f
  37         gen_rand_conf.F
  38         geomout.F
  39         gnmr1.f
  40         intcartderiv.F
  41         initialize_p.F
  42         int_to_cart.f
  43         intcor.f
  44         intlocal.f
  45         kinetic_lesyng.f
  46         lagrangian_lesyng.F
  47         local_move.f
  48         map.f
  49         matmult.f
  50         mc.F
  51         mcm.F
  52         MD_A-MTS.F
  53         minimize_p.F
  54         minim_mcmf.F
  55         misc.f
  56         moments.f
  57         MP.F
  58         MREMD.F
  59         muca_md.f
  60         parmread.F
  61         pinorm.f
  62         printmat.f
  63         prng_32.F
  64         q_measure.F
  65         randgens.f
  66         rattle.F
  67         readpdb.F
  68         readrtns.F
  69         refsys.f
  70         regularize.F
  71         rescode.f
  72         rmdd.f
  73         rmsd.F
  74         sc_move.F
  75         sort.f
  76         stochfric.F
  77         sumsld.f
  78         surfatom.f
  79         test.F
  80         timing.F
  81         thread.F
  82         unres.F
  83         ssMD.F
  84         dfa.F
  85 )
  86 else(UNRES_DFA)
  87  set(UNRES_MD_SRC0
  88         add.f
  89         arcos.f
  90         banach.f
  91         blas.f
  92         bond_move.f
  93         cartder.F
  94         cartprint.f
  95         check_sc_distr.f
  96         check_bond.f
  97         chainbuild.F
  98         checkder_p.F
  99         compare_s1.F
 100         contact.f
 101         convert.f
 102         cored.f
 103         dihed_cons.F
 104         djacob.f
 105         econstr_local.F
 106         eigen.f
 107         elecont.f
 108         energy_split-sep.F
 109         entmcm.F
 110         fitsq.f
 111         gauss.f
 112         gen_rand_conf.F
 113         geomout.F
 114         gnmr1.f
 115         intcartderiv.F
 116         initialize_p.F
 117         int_to_cart.f
 118         intcor.f
 119         intlocal.f
 120         kinetic_lesyng.f
 121         lagrangian_lesyng.F
 122         local_move.f
 123         map.f
 124         matmult.f
 125         mc.F
 126         mcm.F
 127         MD_A-MTS.F
 128         minimize_p.F
 129         minim_mcmf.F
 130         misc.f
 131         moments.f
 132         MP.F
 133         MREMD.F
 134         muca_md.f
 135         parmread.F
 136         pinorm.f
 137         printmat.f
 138         prng_32.F
 139         q_measure.F
 140         randgens.f
 141         rattle.F
 142         readpdb.F
 143         readrtns.F
 144         refsys.f
 145         regularize.F
 146         rescode.f
 147         rmdd.f
 148         rmsd.F
 149         sc_move.F
 150         sort.f
 151         stochfric.F
 152         sumsld.f
 153         surfatom.f
 154         test.F
 155         timing.F
 156         thread.F
 157         unres.F
 158         ssMD.F
 159 )
 160 endif(UNRES_DFA)
 161
 162 set(UNRES_MD_SRC3
 163         energy_p_new_barrier.F
 164         energy_p_new-sep_barrier.F
 165         gradient_p.F )
 166
 167 set(UNRES_MD_PP_SRC
 168         cartder.F
 169         chainbuild.F
 170         checkder_p.F
 171         compare_s1.F
 172         dihed_cons.F
 173         econstr_local.F
 174         energy_p_new_barrier.F
 175         energy_p_new-sep_barrier.F
 176         energy_split-sep.F
 177         entmcm.F
 178         gen_rand_conf.F
 179         geomout.F
 180         gradient_p.F
 181         initialize_p.F
 182         intcartderiv.F
 183         lagrangian_lesyng.F
 184         mc.F
 185         mcm.F
 186         MD_A-MTS.F
 187         minimize_p.F
 188         minim_mcmf.F
 189         MP.F
 190         MREMD.F
 191         parmread.F
 192         prng_32.F
 193         q_measure1.F
 194         q_measure3.F
 195         q_measure.F
 196         rattle.F
 197         readpdb.F
 198         readrtns.F
 199         regularize.F
 200         rmsd.F
 201         sc_move.F
 202         stochfric.F
 203         test.F
 204         thread.F
 205         timing.F
 206         unres.F
 207         proc_proc.c
 208 )
 209
 210 #================================================
 211 # Set comipiler flags for different sourcefiles
 212 #================================================
 213 if (Fortran_COMPILER_NAME STREQUAL "ifort")
 214   set(FFLAGS0 "-ip -w" )
 215   set(FFLAGS1 "-w -g -d2 -CA -CB" )
 216   set(FFLAGS2 "-w -g -00 ")
 217   #set(FFLAGS3 "-c -w -O3 -ipo -ipo_obj -opt_report" )
 218   set(FFLAGS3 "-w -ipo " )
 219 elseif (Fortran_COMPILER_NAME STREQUAL "gfortran")
 220   set(FFLAGS0 "-std=legacy -I. " )
 221   set(FFLAGS1 "-std=legacy -g -I. " )
 222   set(FFLAGS2 "-std=legacy -I. ")
 223   #set(FFLAGS3 "-c -w -O3 -ipo -ipo_obj -opt_report" )
 224   set(FFLAGS3 "-std=legacy -I. " )
 225 endif (Fortran_COMPILER_NAME STREQUAL "ifort")
 226
 227
 228 # Add MPI compiler flags
 229 if(UNRES_WITH_MPI)
 230   set(FFLAGS0 "${FFLAGS0} -I${MPI_Fortran_INCLUDE_PATH}")
 231   set(FFLAGS1 "${FFLAGS1} -I${MPI_Fortran_INCLUDE_PATH}")
 232   set(FFLAGS2 "${FFLAGS2} -I${MPI_Fortran_INCLUDE_PATH}")
 233   set(FFLAGS3 "${FFLAGS3} -I${MPI_Fortran_INCLUDE_PATH}")
 234 endif(UNRES_WITH_MPI)
 235
 236 set_property(SOURCE ${UNRES_MD_SRC0} APPEND PROPERTY COMPILE_FLAGS ${FFLAGS0} )
 237 #set_property(SOURCE ${UNRES_MD_SRC1} PROPERTY COMPILE_FLAGS ${FFLAGS1} )
 238 #set_property(SOURCE ${UNRES_MD_SRC2} PROPERTY COMPILE_FLAGS ${FFLAGS2} )
 239 set_property(SOURCE ${UNRES_MD_SRC3} PROPERTY COMPILE_FLAGS ${FFLAGS3} )
 240
 241 #=========================================
 242 # Settings for GAB force field
 243 #=========================================
 244 if(UNRES_MD_FF STREQUAL "GAB" )
 245   # set preprocesor flags
 246   set(CPPFLAGS "PROCOR -DUNRES -DISNAN -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC")
 247
 248 #=========================================
 249 #  Settings for E0LL2Y force field
 250 #=========================================
 251 elseif(UNRES_MD_FF STREQUAL "E0LL2Y")
 252   # set preprocesor flags
 253   set(CPPFLAGS "PROCOR -DUNRES -DISNAN -DSPLITELE -DLANG0" )
 254 elseif(UNRES_MD_FF STREQUAL "4P")
 255   set(CPPFLAGS "UNRES -DISNAN -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DSCCORPDB" )
 256 endif(UNRES_MD_FF STREQUAL "GAB")
 257
 258 if(UNRES_DFA)
 259  set(CPPFLAGS "${CPPFLAGS} -DDFA")
 260 endif(UNRES_DFA)
 261
 262 #=========================================
 263 # System specific flags
 264 #=========================================
 265 if(${CMAKE_SYSTEM_NAME} MATCHES "Linux")
 266   set(CPPFLAGS "${CPPFLAGS} -DLINUX")
 267 endif(${CMAKE_SYSTEM_NAME} MATCHES "Linux")
 268
 269 #=========================================
 270 # Compiler specific flags
 271 #=========================================
 272
 273 if (Fortran_COMPILER_NAME STREQUAL "ifort")
 274   # Add ifort preprocessor flags
 275   set(CPPFLAGS "${CPPFLAGS} -DPGI")
 276 elseif (Fortran_COMPILER_NAME STREQUAL "f95")
 277   # Add new gfortran flags
 278   set(CPPFLAGS "${CPPFLAGS} -DG77")
 279 elseif (Fortran_COMPILER_NAME STREQUAL "gfortran")
 280   # Add old gfortran flags
 281   set(CPPFLAGS "${CPPFLAGS} -DG77")
 282 endif (Fortran_COMPILER_NAME STREQUAL "ifort")
 283
 284 #=========================================
 285 # Add MPI preprocessor flags
 286 #=========================================
 287 if (UNRES_WITH_MPI)
 288   set(CPPFLAGS "${CPPFLAGS} -DMP -DMPI")
 289 endif(UNRES_WITH_MPI)
 290
 291 #=========================================
 292 # Add 64-bit specific preprocessor flags
 293 #=========================================
 294 if (architektura STREQUAL "64")
 295   set(CPPFLAGS "${CPPFLAGS} -DAMD64")
 296 endif (architektura STREQUAL "64")
 297
 298 #=========================================
 299 # Apply preprocesor flags to *.F files
 300 #=========================================
 301 set_property(SOURCE ${UNRES_MD_PP_SRC} PROPERTY COMPILE_DEFINITIONS ${CPPFLAGS} )
 302
 303
 304 #========================================
 305 #  Setting binary name
 306 #========================================
 307 if(UNRES_WITH_MPI)
 308   # binary with mpi
 309   if(UNRES_DFA)
 310    set(UNRES_BIN "unresMD_${Fortran_COMPILER_NAME}_MPI_${UNRES_MD_FF}_DFA.exe")
 311   else(UNRES_DFA)
 312    set(UNRES_BIN "unresMD_${Fortran_COMPILER_NAME}_MPI_${UNRES_MD_FF}.exe")
 313   endif(UNRES_DFA)
 314 else(UNRES_WITH_MPI)
 315   # binary without mpi
 316   if(UNRES_DFA)
 317    set(UNRES_BIN "unresMD_${Fortran_COMPILER_NAME}_single_${UNRES_MD_FF}_DFA.exe")
 318   else(UNRES_DFA)
 319    set(UNRES_BIN "unresMD_${Fortran_COMPILER_NAME}_single_${UNRES_MD_FF}.exe")
 320   endif(UNRES_DFA)
 321 endif(UNRES_WITH_MPI)
 322
 323 #=========================================
 324 # cinfo.f workaround for cmake
 325 #=========================================
 326 # get the current date
 327 TODAY(DATE)
 328 # generate cinfo.f
 329
 330 set(CINFO "${CMAKE_CURRENT_BINARY_DIR}/cinfo.f")
 331 FILE(WRITE ${CINFO}
 332 "C CMake generated file
 333        subroutine cinfo
 334        include 'COMMON.IOUNITS'
 335        write(iout,*)'++++ Compile info ++++'
 336        write(iout,*)'Version ${UNRES_MAJOR}.${UNRES_MINOR} build ${UNRES_PATCH}'
 337 ")
 338
 339 CINFO_FORMAT(${CINFO} "Compiled" "${DATE}" )
 340 CINFO_FORMAT(${CINFO} "Compiled by" "$ENV{USER}@$ENV{HOST}" )
 341 CINFO_FORMAT(${CINFO} "OS name:" "${CMAKE_SYSTEM_NAME}" )
 342 CINFO_FORMAT(${CINFO} "OS release:" "${CMAKE_SYSTEM}" )
 343 CINFO_FORMAT(${CINFO} "Fortran Compiler:" "${CMAKE_Fortran_COMPILER}" )
 344 CINFO_FORMAT(${CINFO} "MD Force field:" "${UNRES_MD_FF}" )
 345 CINFO_FORMAT(${CINFO} "CPPFLAGS =" "${CPPFLAGS}")
 346
 347 FILE(APPEND ${CINFO}
 348 "       write(iout,*)'++++ End of compile info ++++'
 349        return
 350        end ")
 351
 352 # add include path
 353 set_property(SOURCE ${CMAKE_CURRENT_BINARY_DIR}/cinfo.f PROPERTY COMPILE_FLAGS "${FFLAGS0} -I${CMAKE_CURRENT_SOURCE_DIR}")
 354
 355 #=========================================
 356 # Set full unres MD sources
 357 #=========================================
 358 set(UNRES_MD_SRCS ${UNRES_MD_SRC0} ${UNRES_MD_SRC3} ${CMAKE_CURRENT_BINARY_DIR}/cinfo.f )
 359
 360
 361 #=========================================
 362 # Build the binary
 363 #=========================================
 364 add_executable(UNRES_BIN-MD ${UNRES_MD_SRCS} )
 365 set_target_properties(UNRES_BIN-MD PROPERTIES OUTPUT_NAME ${UNRES_BIN})
 366 set_property(TARGET UNRES_BIN-MD PROPERTY RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin )
 367 #add_dependencies (${UNRES_BIN} ${UNRES_XDRFLIB})
 368
 369
 370 #=========================================
 371 # Link libraries
 372 #=========================================
 373 # link MPI library (libmpich.a)
 374 if(UNRES_WITH_MPI)
 375   target_link_libraries( UNRES_BIN-MD ${MPI_Fortran_LIBRARIES} )
 376 endif(UNRES_WITH_MPI)
 377 # link libxdrf.a
 378 #message("UNRES_XDRFLIB=${UNRES_XDRFLIB}")
 379 target_link_libraries( UNRES_BIN-MD xdrf )
 380
 381 #=========================================
 382 # Install Path
 383 #=========================================
 384 install(TARGETS UNRES_BIN-MD DESTINATION ${CMAKE_INSTALL_PREFIX}/unres/MD)
 385
 386 #=========================================
 387 # TESTS
 388 #=========================================
 389
 390 #-- Copy all the data files from the test directory into the source directory
 391 #SET(UNRES_TEST_FILES
 392 #       ala10.inp
 393 #    )
 394
 395 #FOREACH (UNRES_TEST_FILE ${UNRES_TEST_FILES})
 396 #      SET (unres_test_dest "${CMAKE_CURRENT_BINARY_DIR}/${UNRES_TEST_FILE}")
 397 #      MESSAGE (STATUS " Copying ${UNRES_TEST_FILE} from ${CMAKE_SOURCE_DIR}/examples/unres/MD/ff_gab/${UNRES_TEST_FILE} to ${unres_test_dest}")
 398 #      ADD_CUSTOM_COMMAND (
 399 #          TARGET     ${UNRES_BIN}
 400 #          POST_BUILD
 401 #          COMMAND    ${CMAKE_COMMAND} -E copy ${CMAKE_SOURCE_DIR}/examples/unres/MD/ff_gab/${UNRES_TEST_FILE} ${unres_test_dest}
 402 #      )
 403 #ENDFOREACH (UNRES_TEST_FILE ${UNRES_TEST_FILES})
 404
 405 #=========================================
 406 # Generate data test files
 407 #=========================================
 408 #  test_single_ala.sh
 409 #=========================================
 410
 411 FILE(WRITE ${CMAKE_CURRENT_BINARY_DIR}/scripts/test_single_ala.sh
 412 "#!/bin/sh
 413 export POT=GB
 414 export PREFIX=ala10
 415 #-----------------------------------------------------------------------------
 416 UNRES_BIN=${CMAKE_BINARY_DIR}/bin/${UNRES_BIN}
 417 #-----------------------------------------------------------------------------
 418 DD=${CMAKE_SOURCE_DIR}/PARAM
 419 export BONDPAR=$DD/bond.parm
 420 export THETPAR=$DD/thetaml.5parm
 421 export ROTPAR=$DD/scgauss.parm
 422 export TORPAR=$DD/torsion_631Gdp.parm
 423 export TORDPAR=$DD/torsion_double_631Gdp.parm
 424 export ELEPAR=$DD/electr_631Gdp.parm
 425 export SIDEPAR=$DD/sc_GB_opt.1gab_3S_qclass5no310-shan2-sc-16-10-8k
 426 export FOURIER=$DD/fourier_opt.parm.1igd_hc_iter3_3
 427 export SCPPAR=$DD/scp.parm
 428 export SCCORPAR=$DD/sccor_pdb_shelly.dat
 429 export PATTERN=$DD/patterns.cart
 430 #-----------------------------------------------------------------------------
 431 $UNRES_BIN
 432 ")
 433
 434 #
 435 # File permissions workaround
 436 #
 437 FILE(   COPY ${CMAKE_CURRENT_BINARY_DIR}/scripts/test_single_ala.sh
 438         DESTINATION ${CMAKE_CURRENT_BINARY_DIR}
 439         FILE_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
 440 )
 441
 442
 443
 444 #=========================================
 445 #  ala10.inp
 446 #=========================================
 447
 448 file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/ala10.inp
 449 "ala10 unblocked
 450 SEED=-1111333 MD ONE_LETTER rescale_mode=2
 451 nstep=15000 ntwe=100 ntwx=1000 dt=0.1 lang=0 tbf t_bath=300 damax=1.0          &
 452 reset_moment=1000 reset_vel=1000
 453 WLONG=1.35279 WSCP=1.59304 WELEC=0.71534 WBOND=1.00000 WANG=1.13873            &
 454 WSCLOC=0.16258 WTOR=1.98599 WTORD=1.57069 WCORRH=0.42887 WCORR5=0.00000        &
 455 WCORR6=0.00000 WEL_LOC=0.16036 WTURN3=1.68722 WTURN4=0.66230 WTURN6=0.00000    &
 456 WVDWPP=0.11371 WHPB=1.00000                                                    &
 457 CUTOFF=7.00000 WCORR4=0.00000
 458 12
 459 XAAAAAAAAAAX
 460  0
 461  0
 462    90.0000   90.0000   90.0000  90.000   90.000   90.000   90.000   90.000
 463    90.0000   90.0000
 464   180.0000  180.0000  180.0000 180.000  180.000  180.000  180.000  180.000
 465   180.0000
 466   110.0000  110.0000  110.0000 100.000  110.000  100.000  110.000  110.000
 467   110.0000  110.0000
 468  -120.0000 -120.0000 -120.000 -120.000 -120.000 -120.000 -120.000 -120.000
 469  -120.0000 -120.0000
 470 ")
 471
 472 if(UNRES_MD_FF STREQUAL "E0LL2Y")
 473
 474 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/prota.pdb
 475         DESTINATION ${CMAKE_CURRENT_BINARY_DIR} )
 476
 477 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/prota_unres.pdb
 478         DESTINATION ${CMAKE_CURRENT_BINARY_DIR} )
 479
 480 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/prota_ENE.inp
 481         DESTINATION ${CMAKE_CURRENT_BINARY_DIR} )
 482
 483 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/prota_MIN_CART.inp
 484         DESTINATION ${CMAKE_CURRENT_BINARY_DIR} )
 485
 486 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/1l2y_micro.inp
 487         DESTINATION ${CMAKE_CURRENT_BINARY_DIR} )
 488
 489 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/1l2y_MIN_INT.inp
 490         DESTINATION ${CMAKE_CURRENT_BINARY_DIR} )
 491
 492 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/1l2y_MIN_REGULAR_INT.inp
 493         DESTINATION ${CMAKE_CURRENT_BINARY_DIR} )
 494
 495 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/1L2Y_B.inp
 496         DESTINATION ${CMAKE_CURRENT_BINARY_DIR} )
 497
 498 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/1L2Y_L.inp
 499         DESTINATION ${CMAKE_CURRENT_BINARY_DIR} )
 500
 501 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/1L2Y_NH.inp
 502         DESTINATION ${CMAKE_CURRENT_BINARY_DIR} )
 503
 504
 505 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/1L2Y.pdb
 506         DESTINATION ${CMAKE_CURRENT_BINARY_DIR} )
 507
 508 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/1L2Y_remd.inp
 509         DESTINATION ${CMAKE_CURRENT_BINARY_DIR} )
 510
 511 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/1ei0_min.inp
 512         DESTINATION ${CMAKE_CURRENT_BINARY_DIR} )
 513
 514 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/1ei0.pdb
 515         DESTINATION ${CMAKE_CURRENT_BINARY_DIR} )
 516
 517 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/prota_unres_energy_check.sh
 518         DESTINATION ${CMAKE_CURRENT_BINARY_DIR}
 519         FILE_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
 520 )
 521
 522 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/matplotlib_fit_hist.py
 523         DESTINATION ${CMAKE_CURRENT_BINARY_DIR}
 524         FILE_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
 525 )
 526
 527 FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/matplotlib_hist.py
 528         DESTINATION ${CMAKE_CURRENT_BINARY_DIR}
 529         FILE_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
 530 )
 531
 532
 533
 534 #=========================================
 535 #  test_prota_E0LL2Y.sh
 536 #=========================================
 537
 538 FILE(WRITE ${CMAKE_CURRENT_BINARY_DIR}/scripts/test_prota_E0LL2Y.sh
 539 "#!/bin/sh
 540 export POT=GB
 541 export FGPROCS=$2
 542 export PREFIX=$1
 543 #-----------------------------------------------------------------------------
 544 UNRES_BIN=${CMAKE_BINARY_DIR}/bin/${UNRES_BIN}
 545 #-----------------------------------------------------------------------------
 546 DD=${CMAKE_SOURCE_DIR}/PARAM
 547 export BONDPAR=$DD/bond_AM1.parm
 548 export THETPAR=$DD/theta_abinitio.parm
 549 export ROTPAR=$DD/rotamers_AM1_aura.10022007.parm
 550 export TORPAR=$DD/torsion_631Gdp.parm
 551 export TORDPAR=$DD/torsion_double_631Gdp.parm
 552 export ELEPAR=$DD/electr_631Gdp.parm
 553 export SIDEPAR=$DD/scinter_$POT.parm
 554 export FOURIER=$DD/fourier_opt.parm.1igd_hc_iter3_3
 555 export SCPPAR=$DD/scp.parm
 556 export SCCORPAR=$DD/sccor_am1_pawel.dat
 557 export THETPARPDB=$DD/thetaml.5parm
 558 export ROTPARPDB=$DD/scgauss.parm
 559 export PATTERN=$DD/patterns.cart
 560 #-----------------------------------------------------------------------------
 561 echo CTEST_FULL_OUTPUT
 562 $UNRES_BIN
 563 ./prota_unres_energy_check.sh $1 ${UNRES_BIN}
 564 ")
 565
 566 #
 567 # File permissions workaround
 568 #
 569 FILE(   COPY ${CMAKE_CURRENT_BINARY_DIR}/scripts/test_prota_E0LL2Y.sh
 570         DESTINATION ${CMAKE_CURRENT_BINARY_DIR}
 571         FILE_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
 572 )
 573
 574 #  MESSAGE (STATUS "${MPI_Fortran_LIBRARIES}")
 575   if ("${MPI_Fortran_LIBRARIES}"  MATCHES "lam")
 576      MESSAGE (STATUS "LAM MPI library detected")
 577      set (boot_lam "-boot")
 578   else()
 579      set (boot_lam "")
 580   endif()
 581
 582   if (UNRES_SRUN)
 583    set (np "-n")
 584    set (mpiexec "srun")
 585   else()
 586    set (np "-np")
 587    set (mpiexec "mpiexec")
 588   endif()
 589
 590
 591 FILE(WRITE ${CMAKE_CURRENT_BINARY_DIR}/scripts/test_mpi_E0LL2Y.sh
 592 "#!/bin/sh
 593 export POT=GB
 594 export FGPROCS=$2
 595 export PREFIX=$1
 596 #-----------------------------------------------------------------------------
 597 UNRES_BIN=${CMAKE_BINARY_DIR}/bin/${UNRES_BIN}
 598 #-----------------------------------------------------------------------------
 599 DD=${CMAKE_SOURCE_DIR}/PARAM
 600 export BONDPAR=$DD/bond_AM1.parm
 601 export THETPAR=$DD/theta_abinitio.parm
 602 export ROTPAR=$DD/rotamers_AM1_aura.10022007.parm
 603 export TORPAR=$DD/torsion_631Gdp.parm
 604 export TORDPAR=$DD/torsion_double_631Gdp.parm
 605 export ELEPAR=$DD/electr_631Gdp.parm
 606 export SIDEPAR=$DD/scinter_$POT.parm
 607 export FOURIER=$DD/fourier_opt.parm.1igd_hc_iter3_3
 608 export SCPPAR=$DD/scp.parm
 609 export SCCORPAR=$DD/sccor_am1_pawel.dat
 610 export THETPARPDB=$DD/thetaml.5parm
 611 export ROTPARPDB=$DD/scgauss.parm
 612 export PATTERN=$DD/patterns.cart
 613 #-----------------------------------------------------------------------------
 614 echo CTEST_FULL_OUTPUT
 615 ${mpiexec} ${boot_lam} ${np} $3 $UNRES_BIN | grep -v traj1file
 616 ./prota_unres_energy_check.sh $1 ${UNRES_BIN}
 617 ")
 618
 619 #
 620 # File permissions workaround
 621 #
 622 FILE(   COPY ${CMAKE_CURRENT_BINARY_DIR}/scripts/test_mpi_E0LL2Y.sh
 623         DESTINATION ${CMAKE_CURRENT_BINARY_DIR}
 624         FILE_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
 625 )
 626
 627
 628 endif(UNRES_MD_FF STREQUAL "E0LL2Y")
 629
 630
 631
 632 # Add tests
 633
 634 if(NOT UNRES_WITH_MPI)
 635
 636   if(UNRES_MD_FF STREQUAL "GAB")
 637     add_test(NAME UNRES_MD_Ala10 COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_single_ala.sh )
 638   endif(UNRES_MD_FF STREQUAL "GAB")
 639
 640   if(UNRES_MD_FF STREQUAL "E0LL2Y")
 641     add_test(NAME UNRES_ENE_prota COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_prota_E0LL2Y.sh prota_ENE 1 )
 642     add_test(NAME UNRES_MIN_prota COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_prota_E0LL2Y.sh prota_MIN_CART 1 )
 643     add_test(NAME UNRES_MIN_INT COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_prota_E0LL2Y.sh 1l2y_MIN_INT 1 )
 644     add_test(NAME UNRES_REGULAR COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_prota_E0LL2Y.sh 1l2y_MIN_REGULAR_INT 1 )
 645     add_test(NAME UNRES_MD_microcanonical COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_prota_E0LL2Y.sh 1l2y_micro 1 )
 646     add_test(NAME UNRES_Langevin COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_prota_E0LL2Y.sh 1L2Y_L 1 )
 647     add_test(NAME UNRES_NoseHoover COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_prota_E0LL2Y.sh 1L2Y_NH 1 )
 648     add_test(NAME UNRES_Berendsen COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_prota_E0LL2Y.sh 1L2Y_B 1 )
 649     add_test(NAME UNRES_ss_static_min COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_prota_E0LL2Y.sh 1ei0_min 1 )
 650   endif(UNRES_MD_FF STREQUAL "E0LL2Y")
 651
 652 else(NOT UNRES_WITH_MPI)
 653
 654
 655   if(UNRES_MD_FF STREQUAL "GAB")
 656     add_test(NAME UNRES_MD_MPI_Ala10 COMMAND ${mpiexec} ${boot_lam} ${CMAKE_CURRENT_BINARY_DIR}/test_single_ala.sh )
 657   endif(UNRES_MD_FF STREQUAL "GAB")
 658
 659   if(UNRES_MD_FF STREQUAL "E0LL2Y")
 660     add_test(NAME UNRES_ENE_prota COMMAND ${mpiexec} ${boot_lam} ${np} 2 ${CMAKE_CURRENT_BINARY_DIR}/test_prota_E0LL2Y.sh prota_ENE 2 )
 661     add_test(NAME UNRES_ENE1_prota COMMAND ${mpiexec} ${boot_lam} ${np} 1 ${CMAKE_CURRENT_BINARY_DIR}/test_prota_E0LL2Y.sh prota_ENE 1 )
 662     add_test(NAME UNRES_MIN_prota COMMAND ${mpiexec} ${boot_lam} ${np} 2 ${CMAKE_CURRENT_BINARY_DIR}/test_prota_E0LL2Y.sh prota_MIN_CART 2 )
 663     add_test(NAME UNRES_MIN_INT COMMAND ${mpiexec} ${boot_lam} ${np} 1 ${CMAKE_CURRENT_BINARY_DIR}/test_prota_E0LL2Y.sh 1l2y_MIN_INT 1 )
 664     add_test(NAME UNRES_REGULAR COMMAND ${mpiexec} ${boot_lam} ${np} 1 ${CMAKE_CURRENT_BINARY_DIR}/test_prota_E0LL2Y.sh 1l2y_MIN_REGULAR_INT 1 )
 665     add_test(NAME UNRES_MD_microcanonical COMMAND ${mpiexec} ${boot_lam} ${np} 2 ${CMAKE_CURRENT_BINARY_DIR}/test_prota_E0LL2Y.sh 1l2y_micro 2 )
 666     add_test(NAME UNRES_Langevin COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_mpi_E0LL2Y.sh 1L2Y_L 2 2 )
 667     add_test(NAME UNRES_NoseHoover COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_mpi_E0LL2Y.sh 1L2Y_NH 2 2 )
 668     add_test(NAME UNRES_Berendsen COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_mpi_E0LL2Y.sh 1L2Y_B 2 2 )
 669     add_test(NAME UNRES_remd COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_mpi_E0LL2Y.sh 1L2Y_remd 1 8 )
 670     add_test(NAME UNRES_ss_static_min COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_mpi_E0LL2Y.sh 1ei0_min 1 2 )
 671   endif(UNRES_MD_FF STREQUAL "E0LL2Y")
 672
 673 endif(NOT UNRES_WITH_MPI)
 674