3 C Read the parameters of the probability distributions of the virtual-bond
4 C valence angles and the side chains and energy parameters.
6 C Important! Energy-term weights ARE NOT read here; they are read from the
7 C main input file instead, because NO defaults have yet been set for these
10 implicit real*8 (a-h,o-z)
16 include 'COMMON.IOUNITS'
17 include 'COMMON.CHAIN'
18 include 'COMMON.INTERACT'
20 include 'COMMON.LOCAL'
21 include 'COMMON.TORSION'
22 include 'COMMON.SCCOR'
23 include 'COMMON.SCROT'
24 include 'COMMON.FFIELD'
25 include 'COMMON.NAMES'
26 include 'COMMON.SBRIDGE'
28 include 'COMMON.SETUP'
30 character*1 onelett(4) /"G","A","P","D"/
32 dimension blower(3,3,maxlob)
34 character*3 lancuch,ucase
36 C For printing parameters after they are read set the following in the UNRES
39 C setenv PRINT_PARM YES
41 C To print parameters in LaTeX format rather than as ASCII tables:
45 call getenv_loc("PRINT_PARM",lancuch)
46 lprint = (ucase(lancuch).eq."YES" .or. ucase(lancuch).eq."Y")
47 call getenv_loc("LATEX",lancuch)
48 LaTeX = (ucase(lancuch).eq."YES" .or. ucase(lancuch).eq."Y")
50 dwa16=2.0d0**(1.0d0/6.0d0)
52 C Assign virtual-bond length
57 c Read the virtual-bond parameters, masses, and moments of inertia
58 c and Stokes' radii of the peptide group and side chains
61 read (ibond,*) vbldp0,akp,mp,ip,pstok
64 read (ibond,*) vbldsc0(1,i),aksc(1,i),msc(i),isc(i),restok(i)
69 dsc_inv(i)=1.0D0/dsc(i)
73 read (ibond,*) junk,vbldp0,akp,rjunk,mp,ip,pstok
75 read (ibond,*) nbondterm(i),(vbldsc0(j,i),aksc(j,i),abond0(j,i),
76 & j=1,nbondterm(i)),msc(i),isc(i),restok(i)
81 dsc_inv(i)=1.0D0/dsc(i)
86 write(iout,'(/a/)')"Dynamic constants of the interaction sites:"
87 write (iout,'(a10,a3,6a10)') 'Type','N','VBL','K','A0','mass',
89 write(iout,'(a10,i3,6f10.5)') "p",1,vbldp0,akp,0.0d0,mp,ip,pstok
91 write (iout,'(a10,i3,6f10.5)') restyp(i),nbondterm(i),
92 & vbldsc0(1,i),aksc(1,i),abond0(1,i),msc(i),isc(i),restok(i)
94 write (iout,'(13x,3f10.5)')
95 & vbldsc0(j,i),aksc(j,i),abond0(j,i)
101 C Read the parameters of the probability distribution/energy expression
102 C of the virtual-bond valence angles theta
105 read (ithep,*,err=111,end=111) a0thet(i),(athet(j,i),j=1,2),
107 read (ithep,*,err=111,end=111) (polthet(j,i),j=0,3)
108 read (ithep,*,err=111,end=111) (gthet(j,i),j=1,3)
109 read (ithep,*,err=111,end=111) theta0(i),sig0(i),sigc0(i)
116 & 'Parameters of the virtual-bond valence angles:'
117 write (iout,'(/a/9x,5a/79(1h-))') 'Fourier coefficients:',
118 & ' ATHETA0 ',' A1 ',' A2 ',
121 write(iout,'(a3,i4,2x,5(1pe14.5))') restyp(i),i,
122 & a0thet(i),(athet(j,i),j=1,2),(bthet(j,i),j=1,2)
124 write (iout,'(/a/9x,5a/79(1h-))')
125 & 'Parameters of the expression for sigma(theta_c):',
126 & ' ALPH0 ',' ALPH1 ',' ALPH2 ',
127 & ' ALPH3 ',' SIGMA0C '
129 write (iout,'(a3,i4,2x,5(1pe14.5))') restyp(i),i,
130 & (polthet(j,i),j=0,3),sigc0(i)
132 write (iout,'(/a/9x,5a/79(1h-))')
133 & 'Parameters of the second gaussian:',
134 & ' THETA0 ',' SIGMA0 ',' G1 ',
137 write (iout,'(a3,i4,2x,5(1pe14.5))') restyp(i),i,theta0(i),
138 & sig0(i),(gthet(j,i),j=1,3)
142 & 'Parameters of the virtual-bond valence angles:'
143 write (iout,'(/a/9x,5a/79(1h-))')
144 & 'Coefficients of expansion',
145 & ' theta0 ',' a1*10^2 ',' a2*10^2 ',
146 & ' b1*10^1 ',' b2*10^1 '
148 write(iout,'(a3,1h&,2x,5(f8.3,1h&))') restyp(i),
149 & a0thet(i),(100*athet(j,i),j=1,2),(10*bthet(j,i),j=1,2)
151 write (iout,'(/a/9x,5a/79(1h-))')
152 & 'Parameters of the expression for sigma(theta_c):',
153 & ' alpha0 ',' alph1 ',' alph2 ',
154 & ' alhp3 ',' sigma0c '
156 write (iout,'(a3,1h&,2x,5(1pe12.3,1h&))') restyp(i),
157 & (polthet(j,i),j=0,3),sigc0(i)
159 write (iout,'(/a/9x,5a/79(1h-))')
160 & 'Parameters of the second gaussian:',
161 & ' theta0 ',' sigma0*10^2 ',' G1*10^-1',
164 write (iout,'(a3,1h&,2x,5(f8.3,1h&))') restyp(i),theta0(i),
165 & 100*sig0(i),gthet(1,i)*0.1D0,gthet(2,i),gthet(3,i)*10.0D0
171 C Read the parameters of Utheta determined from ab initio surfaces
172 C Kozlowska et al., J. Phys.: Condens. Matter 19 (2007) 285203
174 read (ithep,*,err=111,end=111) nthetyp,ntheterm,ntheterm2,
175 & ntheterm3,nsingle,ndouble
176 nntheterm=max0(ntheterm,ntheterm2,ntheterm3)
177 read (ithep,*,err=111,end=111) (ithetyp(i),i=1,ntyp1)
183 aathet(l,i,j,k)=0.0d0
187 bbthet(m,l,i,j,k)=0.0d0
188 ccthet(m,l,i,j,k)=0.0d0
189 ddthet(m,l,i,j,k)=0.0d0
190 eethet(m,l,i,j,k)=0.0d0
196 ffthet(mm,m,l,i,j,k)=0.0d0
197 ggthet(mm,m,l,i,j,k)=0.0d0
207 read (ithep,'(3a)',end=111,err=111) res1,res2,res3
208 read (ithep,*,end=111,err=111) aa0thet(i,j,k)
209 read (ithep,*,end=111,err=111)(aathet(l,i,j,k),l=1,ntheterm)
210 read (ithep,*,end=111,err=111)
211 & ((bbthet(lll,ll,i,j,k),lll=1,nsingle),
212 & (ccthet(lll,ll,i,j,k),lll=1,nsingle),
213 & (ddthet(lll,ll,i,j,k),lll=1,nsingle),
214 & (eethet(lll,ll,i,j,k),lll=1,nsingle),ll=1,ntheterm2)
215 read (ithep,*,end=111,err=111)
216 & (((ffthet(llll,lll,ll,i,j,k),ffthet(lll,llll,ll,i,j,k),
217 & ggthet(llll,lll,ll,i,j,k),ggthet(lll,llll,ll,i,j,k),
218 & llll=1,lll-1),lll=2,ndouble),ll=1,ntheterm3)
223 C For dummy ends assign glycine-type coefficients of theta-only terms; the
224 C coefficients of theta-and-gamma-dependent terms are zero.
229 aathet(l,i,j,nthetyp+1)=aathet(l,i,j,1)
230 aathet(l,nthetyp+1,i,j)=aathet(l,1,i,j)
232 aa0thet(i,j,nthetyp+1)=aa0thet(i,j,1)
233 aa0thet(nthetyp+1,i,j)=aa0thet(1,i,j)
236 aathet(l,nthetyp+1,i,nthetyp+1)=aathet(l,1,i,1)
238 aa0thet(nthetyp+1,i,nthetyp+1)=aa0thet(1,i,1)
241 C Control printout of the coefficients of virtual-bond-angle potentials
244 write (iout,'(//a)') 'Parameter of virtual-bond-angle potential'
248 write (iout,'(//4a)')
249 & 'Type ',onelett(i),onelett(j),onelett(k)
250 write (iout,'(//a,10x,a)') " l","a[l]"
251 write (iout,'(i2,1pe15.5)') 0,aa0thet(i,j,k)
252 write (iout,'(i2,1pe15.5)')
253 & (l,aathet(l,i,j,k),l=1,ntheterm)
255 write (iout,'(//2h m,4(9x,a,3h[m,,i1,1h]))')
256 & "b",l,"c",l,"d",l,"e",l
258 write (iout,'(i2,4(1pe15.5))') m,
259 & bbthet(m,l,i,j,k),ccthet(m,l,i,j,k),
260 & ddthet(m,l,i,j,k),eethet(m,l,i,j,k)
264 write (iout,'(//3hm,n,4(6x,a,5h[m,n,,i1,1h]))')
265 & "f+",l,"f-",l,"g+",l,"g-",l
268 write (iout,'(i1,1x,i1,4(1pe15.5))') n,m,
269 & ffthet(n,m,l,i,j,k),ffthet(m,n,l,i,j,k),
270 & ggthet(n,m,l,i,j,k),ggthet(m,n,l,i,j,k)
279 write (2,*) "Start reading THETA_PDB"
281 read (ithep_pdb,*,err=111,end=111) a0thet(i),(athet(j,i),j=1,2),
283 read (ithep_pdb,*,err=111,end=111) (polthet(j,i),j=0,3)
284 read (ithep_pdb,*,err=111,end=111) (gthet(j,i),j=1,3)
285 read (ithep_pdb,*,err=111,end=111) theta0(i),sig0(i),sigc0(i)
288 write (2,*) "End reading THETA_PDB"
294 C Read the parameters of the probability distribution/energy expression
295 C of the side chains.
298 read (irotam,'(3x,i3,f8.3)',end=112,err=112) nlob(i),dsc(i)
302 dsc_inv(i)=1.0D0/dsc(i)
313 read(irotam,*,end=112,err=112)(censc(k,1,i),k=1,3),
314 & ((blower(k,l,1),l=1,k),k=1,3)
316 read (irotam,*,end=112,err=112) bsc(j,i)
317 read (irotam,*,end=112,err=112) (censc(k,j,i),k=1,3),
318 & ((blower(k,l,j),l=1,k),k=1,3)
325 akl=akl+blower(k,m,j)*blower(l,m,j)
336 write (iout,'(/a)') 'Parameters of side-chain local geometry'
341 write (iout,'(/3a,i2,a,f8.3)') 'Residue type: ',restyp(i),
342 & ' # of gaussian lobes:',nlobi,' dsc:',dsc(i)
343 write (iout,'(1h&,a,3(2h&&,f8.3,2h&&))')
344 & 'log h',(bsc(j,i),j=1,nlobi)
345 write (iout,'(1h&,a,3(1h&,f8.3,1h&,f8.3,1h&,f8.3,1h&))')
346 & 'x',((censc(k,j,i),k=1,3),j=1,nlobi)
348 write (iout,'(2h& ,5(2x,1h&,3(f7.3,1h&)))')
349 & ((gaussc(k,l,j,i),l=1,3),j=1,nlobi)
352 write (iout,'(/a,8x,i1,4(25x,i1))') 'Lobe:',(j,j=1,nlobi)
353 write (iout,'(a,f10.4,4(16x,f10.4))')
354 & 'Center ',(bsc(j,i),j=1,nlobi)
355 write (iout,'(5(2x,3f8.4))') ((censc(k,j,i),k=1,3),
364 C Read scrot parameters for potentials determined from all-atom AM1 calculations
365 C added by Urszula Kozlowska 07/11/2007
368 read (irotam,*,end=112,err=112)
370 read (irotam,*,end=112,err=112)
373 read(irotam,*,end=112,err=112) sc_parmin(j,i)
378 C Read the parameters of the probability distribution/energy expression
379 C of the side chains.
382 read (irotam_pdb,'(3x,i3,f8.3)',end=112,err=112) nlob(i),dsc(i)
386 dsc_inv(i)=1.0D0/dsc(i)
397 read(irotam_pdb,*,end=112,err=112)(censc(k,1,i),k=1,3),
398 & ((blower(k,l,1),l=1,k),k=1,3)
400 read (irotam_pdb,*,end=112,err=112) bsc(j,i)
401 read (irotam_pdb,*,end=112,err=112) (censc(k,j,i),k=1,3),
402 & ((blower(k,l,j),l=1,k),k=1,3)
409 akl=akl+blower(k,m,j)*blower(l,m,j)
424 C Read torsional parameters in old format
426 read (itorp,*,end=113,err=113) ntortyp,nterm_old
427 if (lprint)write (iout,*) 'ntortyp,nterm',ntortyp,nterm_old
428 read (itorp,*,end=113,err=113) (itortyp(i),i=1,ntyp)
433 read (itorp,*,end=113,err=113) kk,v1(k,j,i),v2(k,j,i)
439 write (iout,'(/a/)') 'Torsional constants:'
442 write (iout,'(2i3,6f10.5)') i,j,(v1(k,i,j),k=1,nterm_old)
443 write (iout,'(6x,6f10.5)') (v2(k,i,j),k=1,nterm_old)
449 C Read torsional parameters
451 read (itorp,*,end=113,err=113) ntortyp
452 read (itorp,*,end=113,err=113) (itortyp(i),i=1,ntyp)
453 c write (iout,*) 'ntortyp',ntortyp
456 read (itorp,*,end=113,err=113) nterm(i,j),nlor(i,j)
460 read (itorp,*,end=113,err=113) kk,v1(k,i,j),v2(k,i,j)
461 v0ij=v0ij+si*v1(k,i,j)
465 read (itorp,*,end=113,err=113) kk,vlor1(k,i,j),
466 & vlor2(k,i,j),vlor3(k,i,j)
467 v0ij=v0ij+vlor1(k,i,j)/(1+vlor3(k,i,j)**2)
474 write (iout,'(/a/)') 'Torsional constants:'
477 write (iout,*) 'ityp',i,' jtyp',j
478 write (iout,*) 'Fourier constants'
480 write (iout,'(2(1pe15.5))') v1(k,i,j),v2(k,i,j)
482 write (iout,*) 'Lorenz constants'
484 write (iout,'(3(1pe15.5))')
485 & vlor1(k,i,j),vlor2(k,i,j),vlor3(k,i,j)
491 C 6/23/01 Read parameters for double torsionals
496 read (itordp,'(3a1)',end=114,err=114) t1,t2,t3
497 if (t1.ne.onelett(i) .or. t2.ne.onelett(j)
498 & .or. t3.ne.onelett(k)) then
499 write (iout,*) "Error in double torsional parameter file",
502 call MPI_Finalize(Ierror)
504 stop "Error in double torsional parameter file"
506 read (itordp,*,end=114,err=114) ntermd_1(i,j,k),
508 read (itordp,*,end=114,err=114) (v1c(1,l,i,j,k),l=1,
510 read (itordp,*,end=114,err=114) (v1s(1,l,i,j,k),l=1,
512 read (itordp,*,end=114,err=114) (v1c(2,l,i,j,k),l=1,
514 read (itordp,*,end=114,err=114) (v1s(2,l,i,j,k),l=1,
516 read (itordp,*,end=114,err=114) ((v2c(l,m,i,j,k),
517 & v2c(m,l,i,j,k),v2s(l,m,i,j,k),v2s(m,l,i,j,k),
518 & m=1,l-1),l=1,ntermd_2(i,j,k))
524 write (iout,*) 'Constants for double torsionals'
528 write (iout,*) 'ityp',i,' jtyp',j,' ktyp',k,
529 & ' nsingle',ntermd_1(i,j,k),' ndouble',ntermd_2(i,j,k)
531 write (iout,*) 'Single angles:'
532 do l=1,ntermd_1(i,j,k)
533 write (iout,'(i5,2f10.5,5x,2f10.5)') l,
534 & v1c(1,l,i,j,k),v1s(1,l,i,j,k),
535 & v1c(2,l,i,j,k),v1s(2,l,i,j,k)
538 write (iout,*) 'Pairs of angles:'
539 write (iout,'(3x,20i10)') (l,l=1,ntermd_2(i,j,k))
540 do l=1,ntermd_2(i,j,k)
541 write (iout,'(i5,20f10.5)')
542 & l,(v2c(l,m,i,j,k),m=1,ntermd_2(i,j,k))
545 write (iout,'(3x,20i10)') (l,l=1,ntermd_2(i,j,k))
546 do l=1,ntermd_2(i,j,k)
547 write (iout,'(i5,20f10.5)')
548 & l,(v2s(l,m,i,j,k),m=1,ntermd_2(i,j,k))
557 C 5/21/07 (AL) Read coefficients of the backbone-local sidechain-local
558 C correlation energies.
560 read (isccor,*,end=119,err=119) nsccortyp
562 read (isccor,*,end=119,err=119) (isccortyp(i),i=1,ntyp)
563 C For D-aminoacid uncomment
565 C isccortyp(i)=-isccortyp(-i)
567 iscprol=isccortyp(20)
568 c write (iout,*) 'ntortyp',ntortyp
570 cc maxinter is maximum interaction sites
574 read (isccor,*,end=119,err=119)
575 &nterm_sccor(i,j),nlor_sccor(i,j)
578 C nterm_sccor(-i,j)=nterm_sccor(i,j)
579 C nterm_sccor(-i,-j)=nterm_sccor(i,j)
580 C nterm_sccor(i,-j)=nterm_sccor(i,j)
581 do k=1,nterm_sccor(i,j)
582 read (isccor,*,end=119,err=119) kk,v1sccor(k,l,i,j)
584 C if (j.eq.iscprol) then
585 C if (i.eq.isccortyp(10)) then
586 C v1sccor(k,l,i,-j)=v1sccor(k,l,i,j)
587 C v2sccor(k,l,i,-j)=-v2sccor(k,l,i,j)
589 C v1sccor(k,l,i,-j)=v1sccor(k,l,i,j)*0.5d0
590 C & +v2sccor(k,l,i,j)*dsqrt(0.75d0)
591 C v2sccor(k,l,i,-j)=-v2sccor(k,l,i,j)*0.5d0
592 C & +v1sccor(k,l,i,j)*dsqrt(0.75d0)
593 C v1sccor(k,l,-i,-j)=v1sccor(k,l,i,j)
594 C v2sccor(k,l,-i,-j)=-v2sccor(k,l,i,j)
595 C v1sccor(k,l,-i,j)=v1sccor(k,l,i,-j)
596 C v2sccor(k,l,-i,j)=-v2sccor(k,l,i,-j)
599 C if (i.eq.isccortyp(10)) then
600 C v1sccor(k,l,i,-j)=v1sccor(k,l,i,j)
601 C v2sccor(k,l,i,-j)=-v2sccor(k,l,i,j)
603 C if (j.eq.isccortyp(10)) then
604 C v1sccor(k,l,-i,j)=v1sccor(k,l,i,j)
605 C v2sccor(k,l,-i,j)=-v2sccor(k,l,i,j)
607 C v1sccor(k,l,i,-j)=-v1sccor(k,l,i,j)
608 C v2sccor(k,l,i,-j)=-v2sccor(k,l,i,j)
609 C v1sccor(k,l,-i,-j)=v1sccor(k,l,i,j)
610 C v2sccor(k,l,-i,-j)=-v2sccor(k,l,i,j)
611 C v1sccor(k,l,-i,j)=v1sccor(k,l,i,-j)
612 C v2sccor(k,l,-i,j)=-v2sccor(k,l,i,-j)
616 v0ijsccor=v0ijsccor+si*v1sccor(k,l,i,j)
619 do k=1,nlor_sccor(i,j)
620 read (isccor,*,end=113,err=113) kk,vlor1sccor(k,i,j),
621 & vlor2sccor(k,i,j),vlor3sccor(k,i,j)
622 v0ijsccor=v0ijsccor+vlor1sccor(k,i,j)/
623 &(1+vlor3sccor(k,i,j)**2)
625 v0sccor(i,j)=v0ijsccor
631 read (isccor,*,end=113,err=113) (isccortyp(i),i=1,ntyp)
632 c write (iout,*) 'ntortyp',ntortyp
634 cc maxinter is maximum interaction sites
638 read (isccor,*,end=113,err=113)
639 & nterm_sccor(i,j),nlor_sccor(i,j)
643 do k=1,nterm_sccor(i,j)
644 read (isccor,*,end=113,err=113) kk,v1sccor(k,l,i,j)
646 v0ijsccor=v0ijsccor+si*v1sccor(k,l,i,j)
649 do k=1,nlor_sccor(i,j)
650 read (isccor,*,end=113,err=113) kk,vlor1sccor(k,i,j),
651 & vlor2sccor(k,i,j),vlor3sccor(k,i,j)
652 v0ijsccor=v0ijsccor+vlor1sccor(k,i,j)/
653 &(1+vlor3sccor(k,i,j)**2)
655 v0sccor(i,j)=v0ijsccor
663 write (iout,'(/a/)') 'Torsional constants of SCCORR:'
666 C write (iout,'(/a/)') 'Torsional constants:'
669 write (iout,*) 'ityp',i,' jtyp',j
671 C write (iout,'(2(1pe15.5))') v1sccor(k,i,j),v2sccor(k,i,j)
672 C write (iout,*) 'Fourier constants'
673 do k=1,nterm_sccor(i,j)
674 write (iout,'(2(1pe15.5))') v1sccor(k,l,i,j),v2sccor(k,l,i,j)
676 write (iout,*) 'Lorenz constants'
677 do k=1,nlor_sccor(i,j)
678 write (iout,'(3(1pe15.5))')
679 & vlor1sccor(k,i,j),vlor2sccor(k,i,j),vlor3sccor(k,i,j)
685 C 9/18/99 (AL) Read coefficients of the Fourier expansion of the local
686 C interaction energy of the Gly, Ala, and Pro prototypes.
690 write (iout,*) "Coefficients of the cumulants"
692 read (ifourier,*) nloctyp
694 read (ifourier,*,end=115,err=115)
695 read (ifourier,*,end=115,err=115) (b(ii),ii=1,13)
697 write (iout,*) 'Type',i
698 write (iout,'(a,i2,a,f10.5)') ('b(',ii,')=',b(ii),ii=1,13)
724 c Ctilde(1,1,i)=0.0d0
725 c Ctilde(1,2,i)=0.0d0
726 c Ctilde(2,1,i)=0.0d0
727 c Ctilde(2,2,i)=0.0d0
740 c Dtilde(1,1,i)=0.0d0
741 c Dtilde(1,2,i)=0.0d0
742 c Dtilde(2,1,i)=0.0d0
743 c Dtilde(2,2,i)=0.0d0
744 EE(1,1,i)= b(10)+b(11)
745 EE(2,2,i)=-b(10)+b(11)
746 EE(2,1,i)= b(12)-b(13)
747 EE(1,2,i)= b(12)+b(13)
752 c ee(2,1,i)=ee(1,2,i)
756 write (iout,*) 'Type',i
758 write(iout,*) B1(1,i),B1(2,i)
760 write(iout,*) B2(1,i),B2(2,i)
763 write (iout,'(2f10.5)') CC(j,1,i),CC(j,2,i)
767 write (iout,'(2f10.5)') DD(j,1,i),DD(j,2,i)
771 write (iout,'(2f10.5)') EE(j,1,i),EE(j,2,i)
776 C Read electrostatic-interaction parameters
780 write (iout,'(/a)') 'Electrostatic interaction constants:'
781 write (iout,'(1x,a,1x,a,10x,a,11x,a,11x,a,11x,a)')
782 & 'IT','JT','APP','BPP','AEL6','AEL3'
784 read (ielep,*,end=116,err=116) ((epp(i,j),j=1,2),i=1,2)
785 read (ielep,*,end=116,err=116) ((rpp(i,j),j=1,2),i=1,2)
786 read (ielep,*,end=116,err=116) ((elpp6(i,j),j=1,2),i=1,2)
787 read (ielep,*,end=116,err=116) ((elpp3(i,j),j=1,2),i=1,2)
792 app (i,j)=epp(i,j)*rri*rri
793 bpp (i,j)=-2.0D0*epp(i,j)*rri
794 ael6(i,j)=elpp6(i,j)*4.2D0**6
795 ael3(i,j)=elpp3(i,j)*4.2D0**3
796 if (lprint) write(iout,'(2i3,4(1pe15.4))')i,j,app(i,j),bpp(i,j),
797 & ael6(i,j),ael3(i,j)
801 C Read side-chain interaction parameters.
803 read (isidep,*,end=117,err=117) ipot,expon
804 if (ipot.lt.1 .or. ipot.gt.5) then
805 write (iout,'(2a)') 'Error while reading SC interaction',
806 & 'potential file - unknown potential type.'
808 call MPI_Finalize(Ierror)
814 & write(iout,'(/3a,2i3)') 'Potential is ',potname(ipot),
815 & ', exponents are ',expon,2*expon
816 goto (10,20,30,30,40) ipot
817 C----------------------- LJ potential ---------------------------------
818 10 read (isidep,*,end=116,err=116)((eps(i,j),j=i,ntyp),i=1,ntyp),
819 & (sigma0(i),i=1,ntyp)
821 write (iout,'(/a/)') 'Parameters of the LJ potential:'
822 write (iout,'(a/)') 'The epsilon array:'
823 call printmat(ntyp,ntyp,ntyp,iout,restyp,eps)
824 write (iout,'(/a)') 'One-body parameters:'
825 write (iout,'(a,4x,a)') 'residue','sigma'
826 write (iout,'(a3,6x,f10.5)') (restyp(i),sigma0(i),i=1,ntyp)
829 C----------------------- LJK potential --------------------------------
830 20 read (isidep,*,end=116,err=116)((eps(i,j),j=i,ntyp),i=1,ntyp),
831 & (sigma0(i),i=1,ntyp),(rr0(i),i=1,ntyp)
833 write (iout,'(/a/)') 'Parameters of the LJK potential:'
834 write (iout,'(a/)') 'The epsilon array:'
835 call printmat(ntyp,ntyp,ntyp,iout,restyp,eps)
836 write (iout,'(/a)') 'One-body parameters:'
837 write (iout,'(a,4x,2a)') 'residue',' sigma ',' r0 '
838 write (iout,'(a3,6x,2f10.5)') (restyp(i),sigma0(i),rr0(i),
842 C---------------------- GB or BP potential -----------------------------
843 30 read (isidep,*,end=116,err=116)((eps(i,j),j=i,ntyp),i=1,ntyp),
844 & (sigma0(i),i=1,ntyp),(sigii(i),i=1,ntyp),(chip(i),i=1,ntyp),
846 C For the GB potential convert sigma'**2 into chi'
849 chip(i)=(chip(i)-1.0D0)/(chip(i)+1.0D0)
853 write (iout,'(/a/)') 'Parameters of the BP potential:'
854 write (iout,'(a/)') 'The epsilon array:'
855 call printmat(ntyp,ntyp,ntyp,iout,restyp,eps)
856 write (iout,'(/a)') 'One-body parameters:'
857 write (iout,'(a,4x,4a)') 'residue',' sigma ','s||/s_|_^2',
859 write (iout,'(a3,6x,4f10.5)') (restyp(i),sigma0(i),sigii(i),
860 & chip(i),alp(i),i=1,ntyp)
863 C--------------------- GBV potential -----------------------------------
864 40 read (isidep,*,end=116,err=116)((eps(i,j),j=i,ntyp),i=1,ntyp),
865 & (sigma0(i),i=1,ntyp),(rr0(i),i=1,ntyp),(sigii(i),i=1,ntyp),
866 & (chip(i),i=1,ntyp),(alp(i),i=1,ntyp)
868 write (iout,'(/a/)') 'Parameters of the GBV potential:'
869 write (iout,'(a/)') 'The epsilon array:'
870 call printmat(ntyp,ntyp,ntyp,iout,restyp,eps)
871 write (iout,'(/a)') 'One-body parameters:'
872 write (iout,'(a,4x,5a)') 'residue',' sigma ',' r0 ',
873 & 's||/s_|_^2',' chip ',' alph '
874 write (iout,'(a3,6x,5f10.5)') (restyp(i),sigma0(i),rr0(i),
875 & sigii(i),chip(i),alp(i),i=1,ntyp)
879 C-----------------------------------------------------------------------
880 C Calculate the "working" parameters of SC interactions.
888 sigma(i,j)=dsqrt(sigma0(i)**2+sigma0(j)**2)
889 sigma(j,i)=sigma(i,j)
890 rs0(i,j)=dwa16*sigma(i,j)
894 if (lprint) write (iout,'(/a/10x,7a/72(1h-))')
895 & 'Working parameters of the SC interactions:',
896 & ' a ',' b ',' augm ',' sigma ',' r0 ',
901 if (ipot.eq.1 .or. ipot.eq.3 .or. ipot.eq.4) then
910 sigeps=dsign(1.0D0,epsij)
912 aa(i,j)=epsij*rrij*rrij
913 bb(i,j)=-sigeps*epsij*rrij
921 ratsig1=sigt2sq/sigt1sq
922 ratsig2=1.0D0/ratsig1
923 chi(i,j)=(sigii1-1.0D0)/(sigii1+ratsig1)
924 if (j.gt.i) chi(j,i)=(sigii2-1.0D0)/(sigii2+ratsig2)
925 rsum_max=dsqrt(sigii1*sigt1sq+sigii2*sigt2sq)
929 c if (ipot.eq.1 .or. ipot.eq.3 .or. ipot.eq.4) then
930 sigmaii(i,j)=rsum_max
931 sigmaii(j,i)=rsum_max
933 c sigmaii(i,j)=r0(i,j)
934 c sigmaii(j,i)=r0(i,j)
936 cd write (iout,*) i,j,r0(i,j),sigma(i,j),rsum_max
937 if ((ipot.eq.2 .or. ipot.eq.5) .and. r0(i,j).gt.rsum_max) then
938 r_augm=sigma(i,j)*(rrij-sigma(i,j))/rrij
939 augm(i,j)=epsij*r_augm**(2*expon)
940 c augm(i,j)=0.5D0**(2*expon)*aa(i,j)
947 write (iout,'(2(a3,2x),3(1pe10.3),5(0pf8.3))')
948 & restyp(i),restyp(j),aa(i,j),bb(i,j),augm(i,j),
949 & sigma(i,j),r0(i,j),chi(i,j),chi(j,i)
955 C Define the SC-p interaction constants (hard-coded; old style)
958 C "Soft" SC-p repulsion (causes helices to be too flat, but facilitates
960 c aad(i,1)=0.3D0*4.0D0**12
961 C Following line for constants currently implemented
962 C "Hard" SC-p repulsion (gives correct turn spacing in helices)
963 aad(i,1)=1.5D0*4.0D0**12
964 c aad(i,1)=0.17D0*5.6D0**12
966 C "Soft" SC-p repulsion
968 C Following line for constants currently implemented
969 c aad(i,1)=0.3D0*4.0D0**6
970 C "Hard" SC-p repulsion
971 bad(i,1)=3.0D0*4.0D0**6
972 c bad(i,1)=-2.0D0*0.17D0*5.6D0**6
981 C 8/9/01 Read the SC-p interaction constants from file
984 read (iscpp,*,end=118,err=118) (eps_scp(i,j),rscp(i,j),j=1,2)
987 aad(i,1)=dabs(eps_scp(i,1))*rscp(i,1)**12
988 aad(i,2)=dabs(eps_scp(i,2))*rscp(i,2)**12
989 bad(i,1)=-2*eps_scp(i,1)*rscp(i,1)**6
990 bad(i,2)=-2*eps_scp(i,2)*rscp(i,2)**6
994 write (iout,*) "Parameters of SC-p interactions:"
996 write (iout,'(4f8.3,4e12.4)') eps_scp(i,1),rscp(i,1),
997 & eps_scp(i,2),rscp(i,2),aad(i,1),bad(i,1),aad(i,2),bad(i,2)
1002 C Define the constants of the disulfide bridge
1006 c Old arbitrary potential - commented out.
1011 c Constants of the disulfide-bond potential determined based on the RHF/6-31G**
1012 c energy surface of diethyl disulfide.
1013 c A. Liwo and U. Kozlowska, 11/24/03
1030 write (iout,'(/a)') "Disulfide bridge parameters:"
1031 write (iout,'(a,f10.2)') 'S-S bridge energy: ',ebr
1032 write (iout,'(2(a,f10.2))') 'd0cm:',d0cm,' akcm:',akcm
1033 write (iout,'(2(a,f10.2))') 'akth:',akth,' akct:',akct
1034 write (iout,'(3(a,f10.2))') 'v1ss:',v1ss,' v2ss:',v2ss,
1038 111 write (iout,*) "Error reading bending energy parameters."
1040 112 write (iout,*) "Error reading rotamer energy parameters."
1042 113 write (iout,*) "Error reading torsional energy parameters."
1044 114 write (iout,*) "Error reading double torsional energy parameters."
1047 & "Error reading cumulant (multibody energy) parameters."
1049 116 write (iout,*) "Error reading electrostatic energy parameters."
1051 117 write (iout,*) "Error reading side chain interaction parameters."
1053 118 write (iout,*) "Error reading SCp interaction parameters."
1055 119 write (iout,*) "Error reading SCCOR parameters"
1058 call MPI_Finalize(Ierror)
1065 subroutine getenv_loc(var, val)
1066 character(*) var, val
1069 character(2000) line
1072 open (196,file='env',status='old',readonly,shared)
1074 c write(*,*)'looking for ',var
1075 10 read(196,*,err=11,end=11)line
1076 iread=index(line,var)
1077 c write(*,*)iread,' ',var,' ',line
1078 if (iread.eq.0) go to 10
1079 c write(*,*)'---> ',line
1085 iread=iread+ilen(var)+1
1086 read (line(iread:),*,err=12,end=12) val
1087 c write(*,*)'OK: ',var,' = ',val
1093 #elif (defined CRAY)
1094 integer lennam,lenval,ierror
1096 c getenv using a POSIX call, useful on the T3D
1097 c Sept 1996, comment out error check on advice of H. Pritchard
1100 if(lennam.le.0) stop '--error calling getenv--'
1101 call pxfgetenv(var,lennam,val,lenval,ierror)
1102 c-HP- if(ierror.ne.0) stop '--error returned by pxfgetenv--'
1104 call getenv(var,val)