2 implicit real*8 (a-h,o-z)
7 & /'pool','chain regrow','multi-bond','phi','theta','side chain',
9 c Conversion from poises to molecular unit and the gas constant
10 c data cPoise /2.9361d0/, Rb /0.001986d0/
12 c--------------------------------------------------------------------------
15 C Define constants and zero out tables.
17 implicit real*8 (a-h,o-z)
25 cMS$ATTRIBUTES C :: proc_proc
28 include 'COMMON.IOUNITS'
29 include 'COMMON.CHAIN'
30 include 'COMMON.INTERACT'
32 include 'COMMON.LOCAL'
33 include 'COMMON.TORSION'
34 include 'COMMON.FFIELD'
35 include 'COMMON.SBRIDGE'
37 include 'COMMON.MINIM'
38 include 'COMMON.DERIV'
39 include 'COMMON.SPLITELE'
40 c Common blocks from the diagonalization routines
41 COMMON /IOFILE/ IR,IW,IP,IJK,IPK,IDAF,NAV,IODA(400)
42 COMMON /MACHSW/ KDIAG,ICORFL,IXDR
44 c real*8 text1 /'initial_i'/
63 C The following is just to define auxiliary variables used in angle conversion
102 crc for write_rmsbank1
104 cdr include secondary structure prediction bias
107 C CSA I/O units (separated from others especially for Jooyoung)
118 icsa_bank_reminimized=38
121 crc for ifc error 118
124 C Set default weights of the energy terms.
135 print '(a,$)','Inside initialize'
136 c call memmon_print_usage()
186 gaussc(l,k,j,i)=0.0D0
207 C Initialize the bridge arrays
226 C Initialize variables used in minimization.
235 C Initialize the variables responsible for the mode of gradient storage.
240 C Initialize constants used to split the energy into long- and short-range
246 nprint_ene=nprint_ene-1
250 c-------------------------------------------------------------------------
252 implicit real*8 (a-h,o-z)
254 include 'COMMON.NAMES'
255 include 'COMMON.FFIELD'
257 &'CYS','MET','PHE','ILE','LEU','VAL','TRP','TYR','ALA','GLY','THR',
258 &'SER','GLN','ASN','GLU','ASP','HIS','ARG','LYS','PRO','D'/
260 &'C','M','F','I','L','V','W','Y','A','G','T',
261 &'S','Q','N','E','D','H','R','K','P','X'/
262 data potname /'LJ','LJK','BP','GB','GBV'/
264 & "EVDW SC-SC","EVDW2 SC-p","EES p-p","ECORR4 ","ECORR5 ",
265 & "ECORR6 ","EELLO ","ETURN3 ","ETURN4 ","ETURN6 ",
266 & "EBE bend","ESC SCloc","ETORS ","ETORSD ","EHPB ","EVDWPP ",
267 & "ESTR ","EVDW2_14 ","UCONST ", " ","ESCCOR"," "," "/
269 & "WSC","WSCP","WELEC","WCORR","WCORR5","WCORR6","WEL_LOC",
270 & "WTURN3","WTURN4","WTURN6","WANG","WSCLOC","WTOR","WTORD",
271 & "WSTRAIN","WVDWPP","WBOND","SCAL14"," "," ","WSCCOR",
274 data print_order/1,2,3,11,12,13,14,4,5,6,7,8,9,10,19,18,15,17,16,
277 c---------------------------------------------------------------------------
278 subroutine init_int_table
279 implicit real*8 (a-h,o-z)
283 integer blocklengths(15),displs(15)
285 include 'COMMON.CONTROL'
286 include 'COMMON.SETUP'
287 include 'COMMON.CHAIN'
288 include 'COMMON.INTERACT'
289 include 'COMMON.LOCAL'
290 include 'COMMON.SBRIDGE'
291 include 'COMMON.TORCNSTR'
292 include 'COMMON.IOUNITS'
293 include 'COMMON.DERIV'
294 include 'COMMON.CONTACTS'
295 common /przechowalnia/ iturn3_start_all(0:MaxProcs),
296 & iturn3_end_all(0:MaxProcs),iturn4_start_all(0:MaxProcs),
297 & iturn4_end_all(0:MaxProcs),iatel_s_all(0:MaxProcs),
298 & iatel_e_all(0:MaxProcs),ielstart_all(maxres,0:MaxProcs-1),
299 & ielend_all(maxres,0:MaxProcs-1),
300 & ntask_cont_from_all(0:max_fg_procs-1),
301 & itask_cont_from_all(0:max_fg_procs-1,0:max_fg_procs-1),
302 & ntask_cont_to_all(0:max_fg_procs-1),
303 & itask_cont_to_all(0:max_fg_procs-1,0:max_fg_procs-1)
304 integer FG_GROUP,CONT_FROM_GROUP,CONT_TO_GROUP
305 logical scheck,lprint,flag
307 integer my_sc_int(0:max_fg_Procs-1),my_sc_intt(0:max_fg_Procs),
308 & my_ele_int(0:max_fg_Procs-1),my_ele_intt(0:max_fg_Procs)
309 C... Determine the numbers of start and end SC-SC interaction
310 C... to deal with by current processor.
312 itask_cont_from(i)=fg_rank
313 itask_cont_to(i)=fg_rank
317 &write (iout,*) 'INIT_INT_TABLE nres=',nres,' nnt=',nnt,' nct=',nct
318 n_sc_int_tot=(nct-nnt+1)*(nct-nnt)/2-nss
319 call int_bounds(n_sc_int_tot,my_sc_inds,my_sc_inde)
321 & write (iout,*) 'Processor',fg_rank,' CG group',kolor,
322 & ' absolute rank',MyRank,
323 & ' n_sc_int_tot',n_sc_int_tot,' my_sc_inds=',my_sc_inds,
324 & ' my_sc_inde',my_sc_inde
344 cd write (iout,*) 'ns=',ns,' nss=',nss,' ihpb,jhpb',
345 cd & (ihpb(i),jhpb(i),i=1,nss)
349 if (ihpb(ii).eq.i+nres) then
356 cd write (iout,*) 'i=',i,' scheck=',scheck,' jj=',jj
360 c write (iout,*) 'jj=i+1'
361 call int_partition(ind_scint,my_sc_inds,my_sc_inde,i,
362 & iatsc_s,iatsc_e,i+2,nct,nint_gr(i),istart(i,1),iend(i,1),*12)
368 else if (jj.eq.nct) then
370 c write (iout,*) 'jj=nct'
371 call int_partition(ind_scint,my_sc_inds,my_sc_inde,i,
372 & iatsc_s,iatsc_e,i+1,nct-1,nint_gr(i),istart(i,1),iend(i,1),*12)
380 call int_partition(ind_scint,my_sc_inds,my_sc_inde,i,
381 & iatsc_s,iatsc_e,i+1,jj-1,nint_gr(i),istart(i,1),iend(i,1),*12)
383 call int_partition(ind_scint,my_sc_inds,my_sc_inde,i,
384 & iatsc_s,iatsc_e,jj+1,nct,nint_gr(i),istart(i,ii),iend(i,ii),*12)
395 call int_partition(ind_scint,my_sc_inds,my_sc_inde,i,
396 & iatsc_s,iatsc_e,i+1,nct,nint_gr(i),istart(i,1),iend(i,1),*12)
401 ind_scint=ind_scint+nct-i
405 ind_scint_old=ind_scint
414 if (lprint) write (*,*) 'Processor',fg_rank,' CG Group',kolor,
415 & ' absolute rank',myrank,' iatsc_s=',iatsc_s,' iatsc_e=',iatsc_e
418 write (iout,'(a)') 'Interaction array:'
420 write (iout,'(i3,2(2x,2i3))')
421 & i,(istart(i,iint),iend(i,iint),iint=1,nint_gr(i))
426 C Now partition the electrostatic-interaction array
428 nele_int_tot=(npept-ispp)*(npept-ispp+1)/2
429 call int_bounds(nele_int_tot,my_ele_inds,my_ele_inde)
431 & write (*,*) 'Processor',fg_rank,' CG group',kolor,
432 & ' absolute rank',MyRank,
433 & ' nele_int_tot',nele_int_tot,' my_ele_inds=',my_ele_inds,
434 & ' my_ele_inde',my_ele_inde
441 call int_partition(ind_eleint,my_ele_inds,my_ele_inde,i,
442 & iatel_s,iatel_e,i+ispp,nct-1,ijunk,ielstart(i),ielend(i),*13)
445 if (iatel_s.eq.0) iatel_s=1
446 nele_int_tot_vdw=(npept-2)*(npept-2+1)/2
447 c write (iout,*) "nele_int_tot_vdw",nele_int_tot_vdw
448 call int_bounds(nele_int_tot_vdw,my_ele_inds_vdw,my_ele_inde_vdw)
449 c write (iout,*) "my_ele_inds_vdw",my_ele_inds_vdw,
450 c & " my_ele_inde_vdw",my_ele_inde_vdw
457 call int_partition(ind_eleint_vdw,my_ele_inds_vdw,
459 & iatel_s_vdw,iatel_e_vdw,i+2,nct-1,ijunk,ielstart_vdw(i),
461 c write (iout,*) i," ielstart_vdw",ielstart_vdw(i),
462 c & " ielend_vdw",ielend_vdw(i)
464 if (iatel_s_vdw.eq.0) iatel_s_vdw=1
475 do i=iatel_s_vdw,iatel_e_vdw
481 write (*,'(a)') 'Processor',fg_rank,' CG group',kolor,
482 & ' absolute rank',MyRank
483 write (iout,*) 'Electrostatic interaction array:'
485 write (iout,'(i3,2(2x,2i3))') i,ielstart(i),ielend(i)
490 C Partition the SC-p interaction array
492 nscp_int_tot=(npept-iscp+1)*(npept-iscp+1)
493 call int_bounds(nscp_int_tot,my_scp_inds,my_scp_inde)
494 if (lprint) write (iout,*) 'Processor',fg_rank,' CG group',kolor,
495 & ' absolute rank',myrank,
496 & ' nscp_int_tot',nscp_int_tot,' my_scp_inds=',my_scp_inds,
497 & ' my_scp_inde',my_scp_inde
503 if (i.lt.nnt+iscp) then
504 cd write (iout,*) 'i.le.nnt+iscp'
505 call int_partition(ind_scpint,my_scp_inds,my_scp_inde,i,
506 & iatscp_s,iatscp_e,i+iscp,nct,nscp_gr(i),iscpstart(i,1),
508 else if (i.gt.nct-iscp) then
509 cd write (iout,*) 'i.gt.nct-iscp'
510 call int_partition(ind_scpint,my_scp_inds,my_scp_inde,i,
511 & iatscp_s,iatscp_e,nnt,i-iscp,nscp_gr(i),iscpstart(i,1),
514 call int_partition(ind_scpint,my_scp_inds,my_scp_inde,i,
515 & iatscp_s,iatscp_e,nnt,i-iscp,nscp_gr(i),iscpstart(i,1),
518 call int_partition(ind_scpint,my_scp_inds,my_scp_inde,i,
519 & iatscp_s,iatscp_e,i+iscp,nct,nscp_gr(i),iscpstart(i,ii),
528 if (i.lt.nnt+iscp) then
530 iscpstart(i,1)=i+iscp
532 elseif (i.gt.nct-iscp) then
540 iscpstart(i,2)=i+iscp
546 write (iout,'(a)') 'SC-p interaction array:'
547 do i=iatscp_s,iatscp_e
548 write (iout,'(i3,2(2x,2i3))')
549 & i,(iscpstart(i,j),iscpend(i,j),j=1,nscp_gr(i))
552 C Partition local interactions
554 call int_bounds(nres-2,loc_start,loc_end)
555 loc_start=loc_start+1
557 call int_bounds(nres-2,ithet_start,ithet_end)
558 ithet_start=ithet_start+2
559 ithet_end=ithet_end+2
560 call int_bounds(nct-nnt-2,iturn3_start,iturn3_end)
561 iturn3_start=iturn3_start+nnt
562 iphi_start=iturn3_start+2
563 iturn3_end=iturn3_end+nnt
564 iphi_end=iturn3_end+2
565 iturn3_start=iturn3_start-1
566 iturn3_end=iturn3_end-1
567 call int_bounds(nres-3,itau_start,itau_end)
568 itau_start=itau_start+3
570 call int_bounds(nres-3,iphi1_start,iphi1_end)
571 iphi1_start=iphi1_start+3
572 iphi1_end=iphi1_end+3
573 call int_bounds(nct-nnt-3,iturn4_start,iturn4_end)
574 iturn4_start=iturn4_start+nnt
575 iphid_start=iturn4_start+2
576 iturn4_end=iturn4_end+nnt
577 iphid_end=iturn4_end+2
578 iturn4_start=iturn4_start-1
579 iturn4_end=iturn4_end-1
580 call int_bounds(nres-2,ibond_start,ibond_end)
581 ibond_start=ibond_start+1
582 ibond_end=ibond_end+1
583 call int_bounds(nct-nnt,ibondp_start,ibondp_end)
584 ibondp_start=ibondp_start+nnt
585 ibondp_end=ibondp_end+nnt
586 call int_bounds1(nres-1,ivec_start,ivec_end)
587 print *,"Processor",myrank,fg_rank,fg_rank1,
588 & " ivec_start",ivec_start," ivec_end",ivec_end
589 iset_start=loc_start+2
591 if (ndih_constr.eq.0) then
595 call int_bounds(ndih_constr,idihconstr_start,idihconstr_end)
597 nsumgrad=(nres-nnt)*(nres-nnt+1)/2
599 call int_bounds(nsumgrad,ngrad_start,ngrad_end)
600 igrad_start=((2*nlen+1)
601 & -sqrt(float((2*nlen-1)**2-8*(ngrad_start-1))))/2
602 jgrad_start(igrad_start)=
603 & ngrad_start-(2*nlen-igrad_start)*(igrad_start-1)/2
605 jgrad_end(igrad_start)=nres
606 igrad_end=((2*nlen+1)
607 & -sqrt(float((2*nlen-1)**2-8*(ngrad_end-1))))/2
608 if (igrad_end.gt.igrad_start) jgrad_start(igrad_end)=igrad_end+1
609 jgrad_end(igrad_end)=ngrad_end-(2*nlen-igrad_end)*(igrad_end-1)/2
611 do i=igrad_start+1,igrad_end-1
616 write (*,*) 'Processor:',fg_rank,' CG group',kolor,
617 & ' absolute rank',myrank,
618 & ' loc_start',loc_start,' loc_end',loc_end,
619 & ' ithet_start',ithet_start,' ithet_end',ithet_end,
620 & ' iphi_start',iphi_start,' iphi_end',iphi_end,
621 & ' iphid_start',iphid_start,' iphid_end',iphid_end,
622 & ' ibond_start',ibond_start,' ibond_end',ibond_end,
623 & ' ibondp_start',ibondp_start,' ibondp_end',ibondp_end,
624 & ' iturn3_start',iturn3_start,' iturn3_end',iturn3_end,
625 & ' iturn4_start',iturn4_start,' iturn4_end',iturn4_end,
626 & ' ivec_start',ivec_start,' ivec_end',ivec_end,
627 & ' iset_start',iset_start,' iset_end',iset_end,
628 & ' idihconstr_start',idihconstr_start,' idihconstr_end',
630 write (*,*) 'Processor:',fg_rank,myrank,' igrad_start',
631 & igrad_start,' igrad_end',igrad_end,' ngrad_start',ngrad_start,
632 & ' ngrad_end',ngrad_end
633 do i=igrad_start,igrad_end
634 write(*,*) 'Processor:',fg_rank,myrank,i,
635 & jgrad_start(i),jgrad_end(i)
638 if (nfgtasks.gt.1) then
639 call MPI_Allgather(ivec_start,1,MPI_INTEGER,ivec_displ(0),1,
640 & MPI_INTEGER,FG_COMM1,IERROR)
641 iaux=ivec_end-ivec_start+1
642 call MPI_Allgather(iaux,1,MPI_INTEGER,ivec_count(0),1,
643 & MPI_INTEGER,FG_COMM1,IERROR)
644 call MPI_Allgather(iset_start-2,1,MPI_INTEGER,iset_displ(0),1,
645 & MPI_INTEGER,FG_COMM,IERROR)
646 iaux=iset_end-iset_start+1
647 call MPI_Allgather(iaux,1,MPI_INTEGER,iset_count(0),1,
648 & MPI_INTEGER,FG_COMM,IERROR)
649 call MPI_Allgather(ibond_start,1,MPI_INTEGER,ibond_displ(0),1,
650 & MPI_INTEGER,FG_COMM,IERROR)
651 iaux=ibond_end-ibond_start+1
652 call MPI_Allgather(iaux,1,MPI_INTEGER,ibond_count(0),1,
653 & MPI_INTEGER,FG_COMM,IERROR)
654 call MPI_Allgather(ithet_start,1,MPI_INTEGER,ithet_displ(0),1,
655 & MPI_INTEGER,FG_COMM,IERROR)
656 iaux=ithet_end-ithet_start+1
657 call MPI_Allgather(iaux,1,MPI_INTEGER,ithet_count(0),1,
658 & MPI_INTEGER,FG_COMM,IERROR)
659 call MPI_Allgather(iphi_start,1,MPI_INTEGER,iphi_displ(0),1,
660 & MPI_INTEGER,FG_COMM,IERROR)
661 iaux=iphi_end-iphi_start+1
662 call MPI_Allgather(iaux,1,MPI_INTEGER,iphi_count(0),1,
663 & MPI_INTEGER,FG_COMM,IERROR)
664 call MPI_Allgather(iphi1_start,1,MPI_INTEGER,iphi1_displ(0),1,
665 & MPI_INTEGER,FG_COMM,IERROR)
666 iaux=iphi1_end-iphi1_start+1
667 call MPI_Allgather(iaux,1,MPI_INTEGER,iphi1_count(0),1,
668 & MPI_INTEGER,FG_COMM,IERROR)
675 call MPI_Allgather(iturn3_start,1,MPI_INTEGER,
676 & iturn3_start_all(0),1,MPI_INTEGER,FG_COMM,IERROR)
677 call MPI_Allgather(iturn4_start,1,MPI_INTEGER,
678 & iturn4_start_all(0),1,MPI_INTEGER,FG_COMM,IERROR)
679 call MPI_Allgather(iturn3_end,1,MPI_INTEGER,
680 & iturn3_end_all(0),1,MPI_INTEGER,FG_COMM,IERROR)
681 call MPI_Allgather(iturn4_end,1,MPI_INTEGER,
682 & iturn4_end_all(0),1,MPI_INTEGER,FG_COMM,IERROR)
683 call MPI_Allgather(iatel_s,1,MPI_INTEGER,
684 & iatel_s_all(0),1,MPI_INTEGER,FG_COMM,IERROR)
685 call MPI_Allgather(iatel_e,1,MPI_INTEGER,
686 & iatel_e_all(0),1,MPI_INTEGER,FG_COMM,IERROR)
687 call MPI_Allgather(ielstart(1),maxres,MPI_INTEGER,
688 & ielstart_all(1,0),maxres,MPI_INTEGER,FG_COMM,IERROR)
689 call MPI_Allgather(ielend(1),maxres,MPI_INTEGER,
690 & ielend_all(1,0),maxres,MPI_INTEGER,FG_COMM,IERROR)
692 write (iout,*) "iatel_s_all",(iatel_s_all(i),i=0,nfgtasks)
693 write (iout,*) "iatel_e_all",(iatel_e_all(i),i=0,nfgtasks)
694 write (iout,*) "iturn3_start_all",
695 & (iturn3_start_all(i),i=0,nfgtasks-1)
696 write (iout,*) "iturn3_end_all",
697 & (iturn3_end_all(i),i=0,nfgtasks-1)
698 write (iout,*) "iturn4_start_all",
699 & (iturn4_start_all(i),i=0,nfgtasks-1)
700 write (iout,*) "iturn4_end_all",
701 & (iturn4_end_all(i),i=0,nfgtasks-1)
702 write (iout,*) "The ielstart_all array"
704 write (iout,'(20i4)') i,(ielstart_all(i,j),j=0,nfgtasks-1)
706 write (iout,*) "The ielend_all array"
708 write (iout,'(20i4)') i,(ielend_all(i,j),j=0,nfgtasks-1)
714 itask_cont_from(0)=fg_rank
715 itask_cont_to(0)=fg_rank
717 do ii=iturn3_start,iturn3_end
718 call add_int(ii,ii+2,iturn3_sent(1,ii),
719 & ntask_cont_to,itask_cont_to,flag)
721 do ii=iturn4_start,iturn4_end
722 call add_int(ii,ii+3,iturn4_sent(1,ii),
723 & ntask_cont_to,itask_cont_to,flag)
725 do ii=iturn3_start,iturn3_end
726 call add_int_from(ii,ii+2,ntask_cont_from,itask_cont_from)
728 do ii=iturn4_start,iturn4_end
729 call add_int_from(ii,ii+3,ntask_cont_from,itask_cont_from)
732 write (iout,*) "After turn3 ntask_cont_from",ntask_cont_from,
733 & " ntask_cont_to",ntask_cont_to
734 write (iout,*) "itask_cont_from",
735 & (itask_cont_from(i),i=1,ntask_cont_from)
736 write (iout,*) "itask_cont_to",
737 & (itask_cont_to(i),i=1,ntask_cont_to)
740 c write (iout,*) "Loop forward"
743 c write (iout,*) "from loop i=",i
745 do j=ielstart(i),ielend(i)
746 call add_int_from(i,j,ntask_cont_from,itask_cont_from)
749 c write (iout,*) "Loop backward iatel_e-1",iatel_e-1,
750 c & " iatel_e",iatel_e
754 c write (iout,*) "i",i," ielstart",ielstart(i),
755 c & " ielend",ielend(i)
758 do j=ielstart(i),ielend(i)
759 call add_int(i,j,iint_sent(1,j,nat_sent+1),ntask_cont_to,
760 & itask_cont_to,flag)
768 write (iout,*)"After longrange ntask_cont_from",ntask_cont_from,
769 & " ntask_cont_to",ntask_cont_to
770 write (iout,*) "itask_cont_from",
771 & (itask_cont_from(i),i=1,ntask_cont_from)
772 write (iout,*) "itask_cont_to",
773 & (itask_cont_to(i),i=1,ntask_cont_to)
775 write (iout,*) "iint_sent"
778 write (iout,'(20i4)') ii,(j,(iint_sent(k,j,i),k=1,4),
779 & j=ielstart(ii),ielend(ii))
781 write (iout,*) "iturn3_sent iturn3_start",iturn3_start,
782 & " iturn3_end",iturn3_end
783 write (iout,'(20i4)') (i,(iturn3_sent(j,i),j=1,4),
784 & i=iturn3_start,iturn3_end)
785 write (iout,*) "iturn4_sent iturn4_start",iturn4_start,
786 & " iturn4_end",iturn4_end
787 write (iout,'(20i4)') (i,(iturn4_sent(j,i),j=1,4),
788 & i=iturn4_start,iturn4_end)
791 call MPI_Gather(ntask_cont_from,1,MPI_INTEGER,
792 & ntask_cont_from_all,1,MPI_INTEGER,king,FG_COMM,IERR)
793 c write (iout,*) "Gather ntask_cont_from ended"
795 call MPI_Gather(itask_cont_from(0),max_fg_procs,MPI_INTEGER,
796 & itask_cont_from_all(0,0),max_fg_procs,MPI_INTEGER,king,
798 c write (iout,*) "Gather itask_cont_from ended"
800 call MPI_Gather(ntask_cont_to,1,MPI_INTEGER,ntask_cont_to_all,
801 & 1,MPI_INTEGER,king,FG_COMM,IERR)
802 c write (iout,*) "Gather ntask_cont_to ended"
804 call MPI_Gather(itask_cont_to,max_fg_procs,MPI_INTEGER,
805 & itask_cont_to_all,max_fg_procs,MPI_INTEGER,king,FG_COMM,IERR)
806 c write (iout,*) "Gather itask_cont_to ended"
808 if (fg_rank.eq.king) then
809 write (iout,*)"Contact receive task map (proc, #tasks, tasks)"
811 write (iout,'(20i4)') i,ntask_cont_from_all(i),
812 & (itask_cont_from_all(j,i),j=1,ntask_cont_from_all(i))
816 write (iout,*) "Contact send task map (proc, #tasks, tasks)"
818 write (iout,'(20i4)') i,ntask_cont_to_all(i),
819 & (itask_cont_to_all(j,i),j=1,ntask_cont_to_all(i))
823 C Check if every send will have a matching receive
827 ncheck_to=ncheck_to+ntask_cont_to_all(i)
828 ncheck_from=ncheck_from+ntask_cont_from_all(i)
830 write (iout,*) "Control sums",ncheck_from,ncheck_to
831 if (ncheck_from.ne.ncheck_to) then
832 write (iout,*) "Error: #receive differs from #send."
833 write (iout,*) "Terminating program...!"
839 do j=1,ntask_cont_to_all(i)
840 ii=itask_cont_to_all(j,i)
841 do k=1,ntask_cont_from_all(ii)
842 if (itask_cont_from_all(k,ii).eq.i) then
843 if(lprint)write(iout,*)"Matching send/receive",i,ii
847 if (k.eq.ntask_cont_from_all(ii)+1) then
849 write (iout,*) "Error: send by",j," to",ii,
850 & " would have no matching receive"
856 write (iout,*) "Unmatched sends; terminating program"
860 call MPI_Bcast(flag,1,MPI_LOGICAL,king,FG_COMM,IERROR)
861 c write (iout,*) "flag broadcast ended flag=",flag
864 call MPI_Finalize(IERROR)
865 stop "Error in INIT_INT_TABLE: unmatched send/receive."
867 call MPI_Comm_group(FG_COMM,fg_group,IERR)
868 c write (iout,*) "MPI_Comm_group ended"
870 call MPI_Group_incl(fg_group,ntask_cont_from+1,
871 & itask_cont_from(0),CONT_FROM_GROUP,IERR)
872 call MPI_Group_incl(fg_group,ntask_cont_to+1,itask_cont_to(0),
873 & CONT_TO_GROUP,IERR)
876 iaux=4*(ielend(ii)-ielstart(ii)+1)
877 call MPI_Group_translate_ranks(fg_group,iaux,
878 & iint_sent(1,ielstart(ii),i),CONT_TO_GROUP,
879 & iint_sent_local(1,ielstart(ii),i),IERR )
880 c write (iout,*) "Ranks translated i=",i
883 iaux=4*(iturn3_end-iturn3_start+1)
884 call MPI_Group_translate_ranks(fg_group,iaux,
885 & iturn3_sent(1,iturn3_start),CONT_TO_GROUP,
886 & iturn3_sent_local(1,iturn3_start),IERR)
887 iaux=4*(iturn4_end-iturn4_start+1)
888 call MPI_Group_translate_ranks(fg_group,iaux,
889 & iturn4_sent(1,iturn4_start),CONT_TO_GROUP,
890 & iturn4_sent_local(1,iturn4_start),IERR)
892 write (iout,*) "iint_sent_local"
895 write (iout,'(20i4)') ii,(j,(iint_sent_local(k,j,i),k=1,4),
896 & j=ielstart(ii),ielend(ii))
899 write (iout,*) "iturn3_sent_local iturn3_start",iturn3_start,
900 & " iturn3_end",iturn3_end
901 write (iout,'(20i4)') (i,(iturn3_sent_local(j,i),j=1,4),
902 & i=iturn3_start,iturn3_end)
903 write (iout,*) "iturn4_sent_local iturn4_start",iturn4_start,
904 & " iturn4_end",iturn4_end
905 write (iout,'(20i4)') (i,(iturn4_sent_local(j,i),j=1,4),
906 & i=iturn4_start,iturn4_end)
909 call MPI_Group_free(fg_group,ierr)
910 call MPI_Group_free(cont_from_group,ierr)
911 call MPI_Group_free(cont_to_group,ierr)
912 call MPI_Type_contiguous(3,MPI_DOUBLE_PRECISION,MPI_UYZ,IERROR)
913 call MPI_Type_commit(MPI_UYZ,IERROR)
914 call MPI_Type_contiguous(18,MPI_DOUBLE_PRECISION,MPI_UYZGRAD,
916 call MPI_Type_commit(MPI_UYZGRAD,IERROR)
917 call MPI_Type_contiguous(2,MPI_DOUBLE_PRECISION,MPI_MU,IERROR)
918 call MPI_Type_commit(MPI_MU,IERROR)
919 call MPI_Type_contiguous(4,MPI_DOUBLE_PRECISION,MPI_MAT1,IERROR)
920 call MPI_Type_commit(MPI_MAT1,IERROR)
921 call MPI_Type_contiguous(8,MPI_DOUBLE_PRECISION,MPI_MAT2,IERROR)
922 call MPI_Type_commit(MPI_MAT2,IERROR)
923 call MPI_Type_contiguous(6,MPI_DOUBLE_PRECISION,MPI_THET,IERROR)
924 call MPI_Type_commit(MPI_THET,IERROR)
925 call MPI_Type_contiguous(9,MPI_DOUBLE_PRECISION,MPI_GAM,IERROR)
926 call MPI_Type_commit(MPI_GAM,IERROR)
928 c 9/22/08 Derived types to send matrices which appear in correlation terms
930 if (ivec_count(i).eq.ivec_count(0)) then
936 do ind_typ=lentyp(0),lentyp(nfgtasks-1)
937 if (ind_typ.eq.0) then
947 c displs(i)=displs(i-1)+blocklengths(i-1)*maxres
950 c blocklengths(i)=blocklengths(i)*ichunk
952 c write (iout,*) "blocklengths and displs"
954 c write (iout,*) i,blocklengths(i),displs(i)
957 c call MPI_Type_indexed(4,blocklengths(1),displs(1),
958 c & MPI_DOUBLE_PRECISION,MPI_ROTAT1(ind_typ),IERROR)
959 c call MPI_Type_commit(MPI_ROTAT1(ind_typ),IERROR)
960 c write (iout,*) "MPI_ROTAT1",MPI_ROTAT1
966 c displs(i)=displs(i-1)+blocklengths(i-1)*maxres
969 c blocklengths(i)=blocklengths(i)*ichunk
971 c write (iout,*) "blocklengths and displs"
973 c write (iout,*) i,blocklengths(i),displs(i)
976 c call MPI_Type_indexed(4,blocklengths(1),displs(1),
977 c & MPI_DOUBLE_PRECISION,MPI_ROTAT2(ind_typ),IERROR)
978 c call MPI_Type_commit(MPI_ROTAT2(ind_typ),IERROR)
979 c write (iout,*) "MPI_ROTAT2",MPI_ROTAT2
985 displs(i)=displs(i-1)+blocklengths(i-1)*maxres
988 blocklengths(i)=blocklengths(i)*ichunk
990 call MPI_Type_indexed(8,blocklengths,displs,
991 & MPI_DOUBLE_PRECISION,MPI_PRECOMP11(ind_typ),IERROR)
992 call MPI_Type_commit(MPI_PRECOMP11(ind_typ),IERROR)
998 displs(i)=displs(i-1)+blocklengths(i-1)*maxres
1001 blocklengths(i)=blocklengths(i)*ichunk
1003 call MPI_Type_indexed(8,blocklengths,displs,
1004 & MPI_DOUBLE_PRECISION,MPI_PRECOMP12(ind_typ),IERROR)
1005 call MPI_Type_commit(MPI_PRECOMP12(ind_typ),IERROR)
1011 displs(i)=displs(i-1)+blocklengths(i-1)*maxres
1014 blocklengths(i)=blocklengths(i)*ichunk
1016 call MPI_Type_indexed(6,blocklengths,displs,
1017 & MPI_DOUBLE_PRECISION,MPI_PRECOMP22(ind_typ),IERROR)
1018 call MPI_Type_commit(MPI_PRECOMP22(ind_typ),IERROR)
1024 displs(i)=displs(i-1)+blocklengths(i-1)*maxres
1027 blocklengths(i)=blocklengths(i)*ichunk
1029 call MPI_Type_indexed(2,blocklengths,displs,
1030 & MPI_DOUBLE_PRECISION,MPI_PRECOMP23(ind_typ),IERROR)
1031 call MPI_Type_commit(MPI_PRECOMP23(ind_typ),IERROR)
1037 displs(i)=displs(i-1)+blocklengths(i-1)*maxres
1040 blocklengths(i)=blocklengths(i)*ichunk
1042 call MPI_Type_indexed(4,blocklengths,displs,
1043 & MPI_DOUBLE_PRECISION,MPI_ROTAT_OLD(ind_typ),IERROR)
1044 call MPI_Type_commit(MPI_ROTAT_OLD(ind_typ),IERROR)
1048 iint_start=ivec_start+1
1051 iint_count(i)=ivec_count(i)
1052 iint_displ(i)=ivec_displ(i)
1053 ivec_displ(i)=ivec_displ(i)-1
1054 iset_displ(i)=iset_displ(i)-1
1055 ithet_displ(i)=ithet_displ(i)-1
1056 iphi_displ(i)=iphi_displ(i)-1
1057 iphi1_displ(i)=iphi1_displ(i)-1
1058 ibond_displ(i)=ibond_displ(i)-1
1060 if (nfgtasks.gt.1 .and. fg_rank.eq.king
1061 & .and. (me.eq.0 .or. out1file)) then
1062 write (iout,*) "IVEC_DISPL, IVEC_COUNT, ISET_START, ISET_COUNT"
1064 write (iout,*) i,ivec_displ(i),ivec_count(i),iset_displ(i),
1067 write (iout,*) "iphi_start",iphi_start," iphi_end",iphi_end,
1068 & " iphi1_start",iphi1_start," iphi1_end",iphi1_end
1069 write (iout,*)"IPHI_COUNT, IPHI_DISPL, IPHI1_COUNT, IPHI1_DISPL"
1071 write (iout,*) i,iphi_count(i),iphi_displ(i),iphi1_count(i),
1074 write(iout,'(i10,a,i10,a,i10,a/a,i3,a)') n_sc_int_tot,' SC-SC ',
1075 & nele_int_tot,' electrostatic and ',nscp_int_tot,
1076 & ' SC-p interactions','were distributed among',nfgtasks,
1077 & ' fine-grain processors.'
1093 idihconstr_end=ndih_constr
1094 iphid_start=iphi_start
1095 iphid_end=iphi_end-1
1112 c---------------------------------------------------------------------------
1113 subroutine add_int(ii,jj,itask,ntask_cont_to,itask_cont_to,flag)
1115 include "DIMENSIONS"
1116 include "COMMON.INTERACT"
1117 include "COMMON.SETUP"
1118 include "COMMON.IOUNITS"
1119 integer ii,jj,itask(4),ntask_cont_to,itask_cont_to(0:MaxProcs-1)
1121 integer iturn3_start_all,iturn3_end_all,iturn4_start_all,
1122 & iturn4_end_all,iatel_s_all,iatel_e_all,ielstart_all,ielend_all
1123 common /przechowalnia/ iturn3_start_all(0:MaxProcs),
1124 & iturn3_end_all(0:MaxProcs),iturn4_start_all(0:MaxProcs),
1125 & iturn4_end_all(0:MaxProcs),iatel_s_all(0:MaxProcs),
1126 & iatel_e_all(0:MaxProcs),ielstart_all(maxres,0:MaxProcs-1),
1127 & ielend_all(maxres,0:MaxProcs-1)
1128 integer iproc,isent,k,l
1129 c Determines whether to send interaction ii,jj to other processors; a given
1130 c interaction can be sent to at most 2 processors.
1131 c Sets flag=.true. if interaction ii,jj needs to be sent to at least
1132 c one processor, otherwise flag is unchanged from the input value.
1138 c write (iout,*) "ii",ii," jj",jj
1139 c Loop over processors to check if anybody could need interaction ii,jj
1140 do iproc=0,fg_rank-1
1141 c Check if the interaction matches any turn3 at iproc
1142 do k=iturn3_start_all(iproc),iturn3_end_all(iproc)
1144 if (k.eq.ii-1 .and. l.eq.jj-1 .or. k.eq.ii-1 .and. l.eq.jj+1
1145 & .or. k.eq.ii+1 .and. l.eq.jj+1 .or. k.eq.ii+1 .and. l.eq.jj-1)
1147 c write (iout,*) "turn3 to iproc",iproc," ij",ii,jj,"kl",k,l
1150 if (iproc.ne.itask(1).and.iproc.ne.itask(2)
1151 & .and.iproc.ne.itask(3).and.iproc.ne.itask(4)) then
1154 call add_task(iproc,ntask_cont_to,itask_cont_to)
1158 C Check if the interaction matches any turn4 at iproc
1159 do k=iturn4_start_all(iproc),iturn4_end_all(iproc)
1161 if (k.eq.ii-1 .and. l.eq.jj-1 .or. k.eq.ii-1 .and. l.eq.jj+1
1162 & .or. k.eq.ii+1 .and. l.eq.jj+1 .or. k.eq.ii+1 .and. l.eq.jj-1)
1164 c write (iout,*) "turn3 to iproc",iproc," ij",ii,jj," kl",k,l
1167 if (iproc.ne.itask(1).and.iproc.ne.itask(2)
1168 & .and.iproc.ne.itask(3).and.iproc.ne.itask(4)) then
1171 call add_task(iproc,ntask_cont_to,itask_cont_to)
1175 if (iatel_s_all(iproc).gt.0 .and. iatel_e_all(iproc).gt.0 .and.
1176 & iatel_s_all(iproc).le.ii-1 .and. iatel_e_all(iproc).ge.ii-1)then
1177 if (ielstart_all(ii-1,iproc).le.jj-1.and.
1178 & ielend_all(ii-1,iproc).ge.jj-1) then
1180 if (iproc.ne.itask(1).and.iproc.ne.itask(2)
1181 & .and.iproc.ne.itask(3).and.iproc.ne.itask(4)) then
1184 call add_task(iproc,ntask_cont_to,itask_cont_to)
1187 if (ielstart_all(ii-1,iproc).le.jj+1.and.
1188 & ielend_all(ii-1,iproc).ge.jj+1) then
1190 if (iproc.ne.itask(1).and.iproc.ne.itask(2)
1191 & .and.iproc.ne.itask(3).and.iproc.ne.itask(4)) then
1194 call add_task(iproc,ntask_cont_to,itask_cont_to)
1201 c---------------------------------------------------------------------------
1202 subroutine add_int_from(ii,jj,ntask_cont_from,itask_cont_from)
1204 include "DIMENSIONS"
1205 include "COMMON.INTERACT"
1206 include "COMMON.SETUP"
1207 include "COMMON.IOUNITS"
1208 integer ii,jj,itask(2),ntask_cont_from,
1209 & itask_cont_from(0:MaxProcs-1)
1211 integer iturn3_start_all,iturn3_end_all,iturn4_start_all,
1212 & iturn4_end_all,iatel_s_all,iatel_e_all,ielstart_all,ielend_all
1213 common /przechowalnia/ iturn3_start_all(0:MaxProcs),
1214 & iturn3_end_all(0:MaxProcs),iturn4_start_all(0:MaxProcs),
1215 & iturn4_end_all(0:MaxProcs),iatel_s_all(0:MaxProcs),
1216 & iatel_e_all(0:MaxProcs),ielstart_all(maxres,0:MaxProcs-1),
1217 & ielend_all(maxres,0:MaxProcs-1)
1219 do iproc=fg_rank+1,nfgtasks-1
1220 do k=iturn3_start_all(iproc),iturn3_end_all(iproc)
1222 if (k.eq.ii+1 .and. l.eq.jj+1 .or. k.eq.ii+1.and.l.eq.jj-1
1223 & .or. k.eq.ii-1 .and. l.eq.jj-1 .or. k.eq.ii-1 .and. l.eq.jj+1)
1225 c write (iout,*)"turn3 from iproc",iproc," ij",ii,jj," kl",k,l
1226 call add_task(iproc,ntask_cont_from,itask_cont_from)
1229 do k=iturn4_start_all(iproc),iturn4_end_all(iproc)
1231 if (k.eq.ii+1 .and. l.eq.jj+1 .or. k.eq.ii+1.and.l.eq.jj-1
1232 & .or. k.eq.ii-1 .and. l.eq.jj-1 .or. k.eq.ii-1 .and. l.eq.jj+1)
1234 c write (iout,*)"turn4 from iproc",iproc," ij",ii,jj," kl",k,l
1235 call add_task(iproc,ntask_cont_from,itask_cont_from)
1238 if (iatel_s_all(iproc).gt.0 .and. iatel_e_all(iproc).gt.0) then
1239 if (ii+1.ge.iatel_s_all(iproc).and.ii+1.le.iatel_e_all(iproc))
1241 if (jj+1.ge.ielstart_all(ii+1,iproc).and.
1242 & jj+1.le.ielend_all(ii+1,iproc)) then
1243 call add_task(iproc,ntask_cont_from,itask_cont_from)
1245 if (jj-1.ge.ielstart_all(ii+1,iproc).and.
1246 & jj-1.le.ielend_all(ii+1,iproc)) then
1247 call add_task(iproc,ntask_cont_from,itask_cont_from)
1250 if (ii-1.ge.iatel_s_all(iproc).and.ii-1.le.iatel_e_all(iproc))
1252 if (jj-1.ge.ielstart_all(ii-1,iproc).and.
1253 & jj-1.le.ielend_all(ii-1,iproc)) then
1254 call add_task(iproc,ntask_cont_from,itask_cont_from)
1256 if (jj+1.ge.ielstart_all(ii-1,iproc).and.
1257 & jj+1.le.ielend_all(ii-1,iproc)) then
1258 call add_task(iproc,ntask_cont_from,itask_cont_from)
1265 c---------------------------------------------------------------------------
1266 subroutine add_task(iproc,ntask_cont,itask_cont)
1268 include "DIMENSIONS"
1269 integer iproc,ntask_cont,itask_cont(0:MaxProcs-1)
1272 if (itask_cont(ii).eq.iproc) return
1274 ntask_cont=ntask_cont+1
1275 itask_cont(ntask_cont)=iproc
1278 c---------------------------------------------------------------------------
1279 subroutine int_bounds(total_ints,lower_bound,upper_bound)
1280 implicit real*8 (a-h,o-z)
1281 include 'DIMENSIONS'
1283 include 'COMMON.SETUP'
1284 integer total_ints,lower_bound,upper_bound
1285 integer int4proc(0:max_fg_procs),sint4proc(0:max_fg_procs)
1286 nint=total_ints/nfgtasks
1290 nexcess=total_ints-nint*nfgtasks
1292 int4proc(nfgtasks-i)=int4proc(nfgtasks-i)+1
1296 lower_bound=lower_bound+int4proc(i)
1298 upper_bound=lower_bound+int4proc(fg_rank)
1299 lower_bound=lower_bound+1
1302 c---------------------------------------------------------------------------
1303 subroutine int_bounds1(total_ints,lower_bound,upper_bound)
1304 implicit real*8 (a-h,o-z)
1305 include 'DIMENSIONS'
1307 include 'COMMON.SETUP'
1308 integer total_ints,lower_bound,upper_bound
1309 integer int4proc(0:max_fg_procs),sint4proc(0:max_fg_procs)
1310 nint=total_ints/nfgtasks1
1314 nexcess=total_ints-nint*nfgtasks1
1316 int4proc(nfgtasks1-i)=int4proc(nfgtasks1-i)+1
1320 lower_bound=lower_bound+int4proc(i)
1322 upper_bound=lower_bound+int4proc(fg_rank1)
1323 lower_bound=lower_bound+1
1326 c---------------------------------------------------------------------------
1327 subroutine int_partition(int_index,lower_index,upper_index,atom,
1328 & at_start,at_end,first_atom,last_atom,int_gr,jat_start,jat_end,*)
1329 implicit real*8 (a-h,o-z)
1330 include 'DIMENSIONS'
1331 include 'COMMON.IOUNITS'
1332 integer int_index,lower_index,upper_index,atom,at_start,at_end,
1333 & first_atom,last_atom,int_gr,jat_start,jat_end
1336 if (lprn) write (iout,*) 'int_index=',int_index
1337 int_index_old=int_index
1338 int_index=int_index+last_atom-first_atom+1
1340 & write (iout,*) 'int_index=',int_index,
1341 & ' int_index_old',int_index_old,
1342 & ' lower_index=',lower_index,
1343 & ' upper_index=',upper_index,
1344 & ' atom=',atom,' first_atom=',first_atom,
1345 & ' last_atom=',last_atom
1346 if (int_index.ge.lower_index) then
1348 if (at_start.eq.0) then
1350 jat_start=first_atom-1+lower_index-int_index_old
1352 jat_start=first_atom
1354 if (lprn) write (iout,*) 'jat_start',jat_start
1355 if (int_index.ge.upper_index) then
1357 jat_end=first_atom-1+upper_index-int_index_old
1362 if (lprn) write (iout,*) 'jat_end',jat_end
1367 c------------------------------------------------------------------------------
1368 subroutine hpb_partition
1369 implicit real*8 (a-h,o-z)
1370 include 'DIMENSIONS'
1374 include 'COMMON.SBRIDGE'
1375 include 'COMMON.IOUNITS'
1376 include 'COMMON.SETUP'
1377 include 'COMMON.CONTROL'
1379 call int_bounds(nhpb,link_start,link_end)
1381 & write (iout,*) 'Processor',fg_rank,' CG group',kolor,
1382 & ' absolute rank',MyRank,
1383 & ' nhpb',nhpb,' link_start=',link_start,
1384 & ' link_end',link_end