django_simple/todo/templates/details1.html

   1 {% extends "base.html" %}
   2
   3 {% load i18n lazysignup_tags %}
   4 {% block content %}
   5
   6 {% if task.owner|is_lazy_user %}
   7
   8 <ul class="list-group">
   9
  10 <li class="list-group-item new-task-item task-item">
  11
  12 <div class="col-md-2 form-group">
  13 <form action="/refresh_done1/{{task.id}}/" method="post">
  14 {% csrf_token %}
  15 <input type="submit" class="btn" value="Refresh" name="refreshbtn">
  16 </form>
  17 </div>
  18
  19 <div class="col-md-10 form-group">
  20 <h5 style="text-align:right;float:right;">
  21 {% if not task.done %}
  22  {% if task.running > 0  %}
  23   {% if task.running == 100  %}
  24   postprocessing
  25   {% else %}
  26   running
  27   {% endif %}
  28  {% else %}
  29   waiting in the queue to start
  30  {% endif %}
  31 {% endif %}
  32 </h5>
  33 </div>
  34 </li>
  35 </ul>
  36
  37 <h3> Task <b>{{ task.name }}</b></h3>
  38 Created {{ task.created_date  }}
  39         <ul class="list-group">
  40
  41                         <li class="list-group-item task-item">
  42                                 <div class="col-md-4"> done ?</div>
  43                                 <div class="col-md-8">
  44                                         {% if task.done %}
  45                                                 <span class="fa fa-check-square-o"></span>
  46                                             {% if task.type == "md" or task.type == "remd" %}
  47                                               <form action="restart/"
  48                                                 method="get"
  49                                                 style="text-align;float:right;">
  50                                                 {% csrf_token %}
  51                                                  <input type="submit"
  52                                                  class="btn btn-default"
  53                                                  value="Restart"
  54                                                  name="restartbtn">
  55                                                  </button>
  56                                               </form>
  57                                             {% endif %}
  58                                         {% else %}
  59                                           {% if task.running > 0  %}
  60                                                 <span class="fa fa-spinner
  61                                                 fa-spin"></span>
  62                                                 {{ task.running }}%
  63                                           {% else %}
  64                                                 <span class="fa fa-square-o"></span>
  65                                           {% endif %}
  66                                         {% endif %}
  67
  68                                 </div>
  69                         </li>
  70 <div>
  71     <fieldset class="majorpoints">
  72     <legend class="majorpointslegend"
  73     style="background-color:#d3d3d3;cursor: pointer;">Show input parameters</legend>
  74     <div class="hiders" style="display:none" >
  75
  76                         <li class="list-group-item task-item">
  77                             <div class="col-md-6"> type </div>
  78                             <div class="col-md-6">{{ task.type }}</div>
  79                         </li>
  80
  81                         <li class="list-group-item task-item">
  82                             <div class="col-md-6"> force field </div>
  83                             <div class="col-md-6">{{ task.unres_ff }}</div>
  84                         </li>
  85
  86                         <li class="list-group-item task-item">
  87                             <div class="col-md-4"> sequence </div>
  88                             <div class="col-md-8 monospace">{{ task.md_seq}}</div>
  89                         </li>
  90
  91                         <li class="list-group-item task-item">
  92                             <div class="col-md-4"> secondary structure
  93                             restraints </div>
  94                             <div class="col-md-8 monospace">{{ task.md_2d}}</div>
  95                         </li>
  96
  97
  98                         <li class="list-group-item task-item">
  99                             <div class="col-md-6"> SSBOND </div>
 100                             <div class="col-md-6">{{ task.ssbond}}</div>
 101                         </li>
 102
 103
 104         {% if task.type == "min" %}
 105
 106
 107                         <li class="list-group-item task-item">
 108                             <div class="col-md-6"> algorithm</div>
 109                             <div class="col-md-6">{{ task.min_choice }}</div>
 110                         </li>
 111                         <li class="list-group-item task-item">
 112                             <div class="col-md-6"> overlap</div>
 113                             <div class="col-md-6">{{ task.min_overlap }}</div>
 114                         </li>
 115                         <li class="list-group-item task-item">
 116                             <div class="col-md-6"> searchsc</div>
 117                             <div class="col-md-6">{{ task.min_searchsc }}</div>
 118                         </li>
 119                         <li class="list-group-item task-item">
 120                             <div class="col-md-6"> maxmin</div>
 121                             <div class="col-md-6">{{ task.min_maxmin }}</div>
 122                         </li>
 123                         <li class="list-group-item task-item">
 124                             <div class="col-md-6"> maxfun</div>
 125                             <div class="col-md-6">{{ task.min_maxfun }}</div>
 126                         </li>
 127                         <li class="list-group-item task-item">
 128                             <div class="col-md-6"> pdbout</div>
 129                             <div class="col-md-6">{{ task.min_pdbout }}</div>
 130                         </li>
 131                         <li class="list-group-item task-item">
 132                             <div class="col-md-6"> input pdb </div>
 133                             <div class="col-md-6">{{ task.myfile1 }}</div>
 134                         </li>
 135                         <li class="list-group-item task-item">
 136                             <div class="col-md-6"> pdb code</div>
 137                             <div class="col-md-6">{{ task.pdbcode }}</div>
 138                         </li>
 139                         <li class="list-group-item task-item">
 140                             <div class="col-md-6"> unres_pdb</div>
 141                             <div class="col-md-6">{{ task.min_unres_pdb }}</div>
 142                         </li>
 143
 144         {% endif %}
 145         {% if task.type == "md" %}
 146                         <li class="list-group-item task-item">
 147                             <div class="col-md-6"> starting </div>
 148                             <div class="col-md-6">{{ task.md_start}}</div>
 149                         </li>
 150
 151                         <li class="list-group-item task-item">
 152                             <div class="col-md-6"> input pdb </div>
 153                             <div class="col-md-6">{{ task.myfile1 }}</div>
 154                         </li>
 155                         <li class="list-group-item task-item">
 156                             <div class="col-md-6"> pdb code</div>
 157                             <div class="col-md-6">{{ task.pdbcode }}</div>
 158                         </li>
 159                         <li class="list-group-item task-item">
 160                             <div class="col-md-6"> seed </div>
 161                             <div class="col-md-6">{{ task.md_seed}}</div>
 162                         </li>
 163                         <li class="list-group-item task-item">
 164                             <div class="col-md-6"> pdbref </div>
 165                             <div class="col-md-6">{{ task.md_pdbref}}</div>
 166                         </li>
 167                         <li class="list-group-item task-item">
 168                             <div class="col-md-6"> respa </div>
 169                             <div class="col-md-6">{{ task.md_respa}}</div>
 170                         </li>
 171                         <li class="list-group-item task-item">
 172                             <div class="col-md-6"> temperature </div>
 173                             <div class="col-md-6">{{ task.md_temp}}</div>
 174                         </li>
 175                         <li class="list-group-item task-item">
 176                             <div class="col-md-6"> nstep </div>
 177                             <div class="col-md-6">{{ task.md_nstep}}</div>
 178                         </li>
 179                         <li class="list-group-item task-item">
 180                             <div class="col-md-6"> total steps (with restarts) </div>
 181                             <div class="col-md-6">{{ task.md_total_steps}}</div>
 182                         </li>
 183                         <li class="list-group-item task-item">
 184                             <div class="col-md-6"> ntwe </div>
 185                             <div class="col-md-6">{{ task.md_ntwe}}</div>
 186                         </li>
 187                         <li class="list-group-item task-item">
 188                             <div class="col-md-6"> ntwx </div>
 189                             <div class="col-md-6">{{ task.md_ntwx}}</div>
 190                         </li>
 191                         <li class="list-group-item task-item">
 192                             <div class="col-md-6"> dt </div>
 193                             <div class="col-md-6">{{ task.md_dt}}</div>
 194                         </li>
 195                         <li class="list-group-item task-item">
 196                             <div class="col-md-6"> thermostat </div>
 197                             <div class="col-md-6">{{ task.md_lang}}</div>
 198                         </li>
 199
 200                         {% if task.md_lang == "berendsen" %}
 201
 202                         <li class="list-group-item task-item">
 203                             <div class="col-md-6"> tau </div>
 204                             <div class="col-md-6">{{ task.md_tau}}</div>
 205                         </li>
 206
 207                         {% else %}
 208
 209                         <li class="list-group-item task-item">
 210                             <div class="col-md-6"> scal_fric </div>
 211                             <div class="col-md-6">{{ task.md_scal_fric}}</div>
 212                         </li>
 213
 214                         {% endif %}
 215
 216                         <li class="list-group-item task-item">
 217                             <div class="col-md-6"> mdpdb </div>
 218                             <div class="col-md-6">{{ task.md_mdpdb}}</div>
 219                         </li>
 220                         <li class="list-group-item task-item">
 221                             <div class="col-md-6"> RESPA </div>
 222                             <div class="col-md-6">{{ task.md_respa}}</div>
 223                         </li>
 224
 225
 226         {% endif %}
 227
 228         {% if task.type == "remd" %}
 229
 230                         <li class="list-group-item task-item">
 231                             <div class="col-md-6"> nrep </div>
 232                             <div class="col-md-6">{{ task.remd_nrep}}</div>
 233                         </li>
 234                         <li class="list-group-item task-item">
 235                             <div class="col-md-6"> starting </div>
 236                             <div class="col-md-6">{{ task.md_start}}</div>
 237                         </li>
 238
 239                         <li class="list-group-item task-item">
 240                             <div class="col-md-6"> input pdb </div>
 241                             <div class="col-md-6">{{ task.myfile1 }}</div>
 242                         </li>
 243                         <li class="list-group-item task-item">
 244                             <div class="col-md-6"> pdb code</div>
 245                             <div class="col-md-6">{{ task.pdbcode }}</div>
 246                         </li>
 247                         <li class="list-group-item task-item">
 248                             <div class="col-md-6"> seed </div>
 249                             <div class="col-md-6">{{ task.md_seed}}</div>
 250                         </li>
 251                         <li class="list-group-item task-item">
 252                             <div class="col-md-6"> pdbref </div>
 253                             <div class="col-md-6">{{ task.md_pdbref}}</div>
 254                         </li>
 255                         {% if task.md_start == "pdbstart" %}
 256                         <li class="list-group-item task-item">
 257                             <div class="col-md-6"> preminim maxfun </div>
 258                             <div class="col-md-6">{{ task.min_maxfun }}</div>
 259                         </li>
 260                         {% endif %}
 261                         <li class="list-group-item task-item">
 262                             <div class="col-md-6"> respa </div>
 263                             <div class="col-md-6">{{ task.md_respa}}</div>
 264                         </li>
 265                         <li class="list-group-item task-item">
 266                             <div class="col-md-6"> nstep </div>
 267                             <div class="col-md-6">{{ task.md_nstep}}</div>
 268                         </li>
 269                         <li class="list-group-item task-item">
 270                             <div class="col-md-6"> total steps (with restarts) </div>
 271                             <div class="col-md-6">{{ task.md_total_steps}}</div>
 272                         </li>
 273                         <li class="list-group-item task-item">
 274                             <div class="col-md-6"> ntwe </div>
 275                             <div class="col-md-6">{{ task.md_ntwe}}</div>
 276                         </li>
 277                         <li class="list-group-item task-item">
 278                             <div class="col-md-6"> nstex </div>
 279                             <div class="col-md-6">{{ task.remd_nstex}}</div>
 280                         </li>
 281                         <li class="list-group-item task-item">
 282                             <div class="col-md-6"> ntwx </div>
 283                             <div class="col-md-6">{{ task.md_ntwx}}</div>
 284                         </li>
 285                         <li class="list-group-item task-item">
 286                             <div class="col-md-6"> dt </div>
 287                             <div class="col-md-6">{{ task.md_dt}}</div>
 288                         </li>
 289                         <li class="list-group-item task-item">
 290                             <div class="col-md-6"> thermostat </div>
 291                             <div class="col-md-6">{{ task.md_lang}}</div>
 292                         </li>
 293
 294                         {% if task.md_lang == "berendsen" %}
 295
 296                         <li class="list-group-item task-item">
 297                             <div class="col-md-6"> tau </div>
 298                             <div class="col-md-6">{{ task.md_tau}}</div>
 299                         </li>
 300
 301                         {% else %}
 302
 303                         <li class="list-group-item task-item">
 304                             <div class="col-md-6"> scal_fric </div>
 305                             <div class="col-md-6">{{ task.md_scal_fric}}</div>
 306                         </li>
 307
 308                         {% endif %}
 309
 310                         <li class="list-group-item task-item">
 311                             <div class="col-md-6"> RESPA </div>
 312                             <div class="col-md-6">{{ task.md_respa}}</div>
 313                         </li>
 314
 315                         <li class="list-group-item task-item">
 316                             <div class="col-md-6"> temperatures </div>
 317                             <div class="col-md-6">{{ task.remd_multi_t}}</div>
 318                         </li>
 319                         <li class="list-group-item task-item">
 320                             <div class="col-md-6"> multiplex </div>
 321                             <div class="col-md-6">{{ task.remd_multi_m}}</div>
 322                         </li>
 323                         <li class="list-group-item task-item">
 324                             <div class="col-md-6"> temperature for clustering</div>
 325                             <div class="col-md-6">{{ task.remd_cluter_temp}}</div>
 326                         </li>
 327                         {% if task.saxs_data != "" %}
 328                         <li class="list-group-item task-item">
 329                             <div class="col-md-6"> wsaxs </div>
 330                             <div class="col-md-6">{{ task.wsaxs }}</div>
 331                         </li>
 332                         <li class="list-group-item task-item">
 333                             <div class="col-md-6"> scal_rad (saxs) </div>
 334                             <div class="col-md-6">{{ task.scal_rad }}</div>
 335                         </li>
 336                         <li class="list-group-item task-item">
 337                             <div class="col-md-6"> saxs distribution </div>
 338                             <div class="col-md-6"><pre> {{ task.saxs_data }}</pre></div>
 339                         </li>
 340                         {% endif %}
 341
 342         {% endif %}
 343
 344                         <li class="list-group-item task-item">
 345                             <div class="col-md-6"> Box X Y Z</div>
 346                             <div class="col-md-2">{{ task.boxx}}</div>
 347                             <div class="col-md-2">{{ task.boxy}}</div>
 348                             <div class="col-md-2">{{ task.boxz}}</div>
 349                         </li>
 350
 351 </div>
 352 </div>
 353         <p>
 354         <h3> Results </h3>
 355                         <li class="list-group-item task-item">
 356                             <div class="col-md-4"> Directory </div>
 357                             <div class="col-md-8">
 358                             <a href="/myfiles/list/{{task.jobdirname}}/">
 359                             {{ task.jobdirname }}
 360                             </a>
 361                             </div>
 362                         </li>
 363
 364
 365         {% if task.done %}
 366
 367                         {% if task.type == "min" %}
 368
 369                         <li class="list-group-item task-item">
 370                             <div class="col-md-2"> Etot </div>
 371                             <div class="col-md-10">{{ task.etot }}</div>
 372                         </li>
 373 <!--
 374                         <li class="list-group-item task-item">
 375                           <div class="col-md-2"> UNRES model </div>
 376                           <div class="col-md-10">
 377                           <a
 378                            href="/myfiles/download-file/{{task.jobdirname}}/unres.pse">
 379                           <img
 380                           src="/myfiles/download-file/{{task.jobdirname}}/unres.png"
 381                           width="500"></a> </div>
 382                         </li>
 383 -->
 384                         <li class="list-group-item task-item">
 385                           <div class="col-md-2"> UNRES model NGL viewer</div>
 386                           <div class="col-md-10" id="viewport_unres"
 387                           style="width:500px;height:500px;">
 388                           </div>
 389                         </li>
 390
 391
 392 <!--
 393                         <li class="list-group-item task-item">
 394                           <div class="col-md-2"> Structure overlap </div>
 395                           <div class="col-md-10"> <img
 396                           src="/myfiles/download-file/{{task.jobdirname}}/unres_overlap.png"
 397                           width="500"> </div>
 398                         </li>
 399 -->
 400                         <li class="list-group-item task-item">
 401                           <div class="col-md-2"> Structure overlap NGL viewer</div>
 402                           <div class="col-md-10" id="viewport_min"
 403                           style="width:500px;height:500px;">
 404                           </div>
 405                         </li>
 406                         <li class="list-group-item task-item">
 407                <div class="col-md-12">
 408                <button id="toggleAllatom">Input structure on/off</button>
 409                <button id="toggleSidechains2">Side-chains on/off</button>
 410                </div>
 411                         </li>
 412                         {% endif %}
 413
 414                         <li class="list-group-item task-item">
 415                             <div class="col-md-2"> Results </div>
 416                             <div class="col-md-10">{{ task.results_text|linebreaks }}</div>
 417                         </li>
 418
 419                         {% if task.type == "md" %}
 420
 421                         <li class="list-group-item task-item">
 422                           <div class="col-md-2"> Temperature histogram </div>
 423                           <div class="col-md-10"> <img
 424                           src="/myfiles/download-file/{{task.jobdirname}}/temp_hist.png"
 425                           width="500"> </div>
 426                         </li>
 427
 428                         <li class="list-group-item task-item">
 429                           <div class="col-md-2"> Potential energy </div>
 430                           <div class="col-md-10"> <img
 431                           src="/myfiles/download-file/{{task.jobdirname}}/md_ene.png"
 432                           width="500"> </div>
 433                         </li>
 434
 435                             <li class="list-group-item task-item">
 436                             <div class="col-md-2"> Movie </div>
 437                             <div class="col-md-10">
 438
 439                             <video width="500" height="400"
 440                             preload="auto" controls="controls">
 441                             <source
 442                             src="/myfiles/download-file/{{task.jobdirname}}/md.ogv"
 443                             type="video/ogg; codecs=theora"> </source>
 444                             </video>
 445
 446                             </div>
 447                             </li>
 448
 449 {% if task.md_mdpdb %}
 450                         <li class="list-group-item task-item">
 451                           <div class="col-md-2"> Trajectory NGL viewer</div>
 452                           <div class="col-md-10" id="viewport_traj"
 453                           style="width:500px;height:500px;">
 454                           </div>
 455                         </li>
 456                         <li class="list-group-item task-item">
 457                <div class="col-md-6">
 458 <input id="clipRange" type="range" value=1 min=1 max= {% widthratio task.md_total_steps task.md_ntwx 1 %} step=1 ></input><span id="clipRange_val">1</span> frame
 459 </div>
 460 <div class="col-md-6">
 461 <button id="toggleRunMDs">run/pause MD</button>
 462 <button id="toggleSidechains1">side-chains on/off</button>
 463 </div>
 464                         </li>
 465
 466 {% endif %}
 467
 468                         <li class="list-group-item task-item">
 469                           <div class="col-md-2"> Radius of gyration based
 470                           on C<sup>α</sup> coordinates </div>
 471                           <div class="col-md-10"> <img
 472                           src="/myfiles/download-file/{{task.jobdirname}}/md_gyr.png"
 473                           width="500"> </div>
 474                         </li>
 475
 476
 477
 478                            {% if task.md_pdbref %}
 479                         <li class="list-group-item task-item">
 480                           <div class="col-md-2"> C<sup>&alpha;</sup> RMSD </div>
 481                           <div class="col-md-10"> <img
 482                           src="/myfiles/download-file/{{task.jobdirname}}/md_rms.png"
 483                           width="500"> </div>
 484                         </li>
 485
 486                         <li class="list-group-item task-item">
 487                           <div class="col-md-2"> fraction of native
 488                           side-chain concacts </div>
 489                           <div class="col-md-10"> <img
 490                           src="/myfiles/download-file/{{task.jobdirname}}/md_fracn.png"
 491                           width="500"> </div>
 492                         </li>
 493
 494                            {% endif %}
 495
 496                            {% if task.md_start == "pdbstart" %}
 497                         <li class="list-group-item task-item">
 498                           <div class="col-md-2"> fluctuations </div>
 499                           <div class="col-md-10"> <img
 500                           src="/myfiles/download-file/{{task.jobdirname}}/fluct_plot.png"
 501                           width="500"> </div>
 502                         </li>
 503 <!--
 504                         <li class="list-group-item task-item">
 505                           <div class="col-md-2"> fluctuations putty on
 506                           starting structure</div>
 507                           <div class="col-md-10">
 508                           <a
 509                           href="/myfiles/download-file/{{task.jobdirname}}/fluct.pse">
 510                           <img
 511                           src="/myfiles/download-file/{{task.jobdirname}}/fluct.png"
 512                           width="500"></a> </div>
 513                         </li>
 514 -->
 515                         <li class="list-group-item task-item">
 516                           <div class="col-md-2"> fluctuations putty on
 517                           starting structure NGL viewer</div>
 518                           <div class="col-md-10" id="viewport_putty"
 519                           style="width:500px;height:500px;">
 520                           </div>
 521                         </li>
 522
 523
 524                            {% endif %}
 525
 526
 527
 528                         {% endif %}
 529
 530                         {% if task.type == "remd" %}
 531
 532                         <li class="list-group-item task-item">
 533                           <div class="col-md-2"> Energy histogram </div>
 534                           <div class="col-md-10"> <img
 535                           src="/myfiles/download-file/{{task.jobdirname}}/remd_ene_hist.png"
 536                           width="500"> </div>
 537                         </li>
 538
 539                         <li class="list-group-item task-item">
 540                           <div class="col-md-2"> Energy vs. temperature </div>
 541                           <div class="col-md-10"> <img
 542                           src="/myfiles/download-file/{{task.jobdirname}}/remd_Tene.png"
 543                           width="500"> </div>
 544                         </li>
 545
 546                         <li class="list-group-item task-item">
 547                           <div class="col-md-2"> Cv vs. temperature </div>
 548                           <div class="col-md-10"> <img
 549                           src="/myfiles/download-file/{{task.jobdirname}}/remd_cv.png"
 550                           width="500"> </div>
 551                         </li>
 552
 553                            {% if task.md_pdbref %}
 554
 555                         <li class="list-group-item task-item">
 556                           <div class="col-md-2"> Average C<sup>&alpha;</sup> RMSD vs. temperature </div>
 557                           <div class="col-md-10"> <img
 558                           src="/myfiles/download-file/{{task.jobdirname}}/remd_rmsd.png"
 559                           width="500"> </div>
 560                         </li>
 561
 562                         <li class="list-group-item task-item">
 563                           <div class="col-md-2"> potential energy vs.
 564                           C<sup>&alpha;</sup> RMSD</div>
 565                           <div class="col-md-10"> <img
 566                           src="/myfiles/download-file/{{task.jobdirname}}/remd_ene_rms.png"
 567                           width="500"> </div>
 568                         </li>
 569
 570                         <li class="list-group-item task-item">
 571                           <div class="col-md-2"> C<sup>&alpha;</sup> RMSD vs. step*replica
 572                           colored by bath temperature</div>
 573                           <div class="col-md-10"> <img
 574                           src="/myfiles/download-file/{{task.jobdirname}}/remd_step_rms.png"
 575                           width="500"> </div>
 576                         </li>
 577
 578
 579                            {% endif %}
 580
 581                         <li class="list-group-item task-item">
 582                           <div class="col-md-2"> exchanges (walk in T) </div>
 583                           <div class="col-md-10"> <img
 584                           src="/myfiles/download-file/{{task.jobdirname}}/remd_ex.png"
 585                           width="500"> </div>
 586                         </li>
 587
 588                            {% if task.saxs_data != "" %}
 589                         <li class="list-group-item task-item">
 590                           <div class="col-md-2"> P(r) of input SAXS data and
 591                           calculated for 5 models and the input pdb</div>
 592                           <div class="col-md-10"> <img
 593                           src="/myfiles/download-file/{{task.jobdirname}}/saxs.png"
 594                           width="500"> </div>
 595                         </li>
 596                            {% endif %}
 597
 598         <li class="list-group-item task-item">
 599         <div class="col-md-4">
 600         <button onclick="plusDivs(-1)">&#10094;</button>
 601         </div>
 602         <div class="col-md-6">
 603         select model
 604         </div>
 605         <div class="col-md-2">
 606         <button onclick="plusDivs(1)">&#10095;</button>
 607         </div>
 608         </li>
 609
 610                         <div class="model">
 611 <!--                    <li class="list-group-item task-item">
 612                           <div class="col-md-2"> model1 after conversion
 613                           to allatom
 614                           {{ task.remd_model1|linebreaks }}
 615                           </div>
 616                           <div class="col-md-10">
 617                           <a
 618                           href="/myfiles/download-file/{{task.jobdirname}}/MODEL1.pdb">
 619                           <img
 620                           src="/myfiles/download-file/{{task.jobdirname}}/model1.png" width="500">
 621                           </a></div>
 622                         </li> -->
 623                         <li class="list-group-item task-item">
 624                           <div class="col-md-2"> model1
 625                           {% if not task.damino %}
 626                           after conversion to allatom
 627                           {% endif %}
 628                           {{ task.remd_model1|linebreaks }}
 629                           NGL viewer</div>
 630                           <div class="col-md-10" id="viewport_M1"
 631                           style="width:500px;height:500px;">
 632                           </div>
 633                         </li>
 634                         <li class="list-group-item task-item">
 635                <div class="col-md-12">
 636                {% if task.md_pdbref %}
 637                <button id="toggleRefM1">Reference structure on/off</button>
 638                {% endif %}
 639                <button id="toggleSidechainsM1">Side-chains on/off</button>
 640                <a class="btn btn-default"
 641                href="/myfiles/download-file/{{task.jobdirname}}/MODEL1.pdb">Download</a>
 642                </div>
 643                         </li>
 644
 645                         </div>
 646                         <div class="model">
 647 <!--                    <li class="list-group-item task-item">
 648                           <div class="col-md-2"> model2 after conversion
 649                           to allatom
 650                           {{ task.remd_model2|linebreaks }}
 651                           </div>
 652                           <div class="col-md-10">
 653                           <a
 654                           href="/myfiles/download-file/{{task.jobdirname}}/MODEL2.pdb">
 655                           <img
 656                           src="/myfiles/download-file/{{task.jobdirname}}/model2.png" width="500">
 657                           </a></div>
 658                         </li> -->
 659                         <li class="list-group-item task-item">
 660                           <div class="col-md-2"> model2
 661                           {% if not task.damino %}
 662                           after conversion to allatom
 663                           {% endif %}
 664                           {{ task.remd_model2|linebreaks }}
 665                           NGL viewer</div>
 666                           <div class="col-md-10" id="viewport_M2"
 667                           style="width:500px;height:500px;">
 668                           </div>
 669                         </li>
 670                         <li class="list-group-item task-item">
 671                <div class="col-md-12">
 672                {% if task.md_pdbref %}
 673                <button id="toggleRefM2">Reference structure on/off</button>
 674                {% endif %}
 675                <button id="toggleSidechainsM2">Side-chains on/off</button>
 676                <a class="btn btn-default"
 677                href="/myfiles/download-file/{{task.jobdirname}}/MODEL2.pdb">Download</a>
 678                </div>
 679                         </li>
 680
 681
 682                         </div>
 683                         <div class="model">
 684 <!--                    <li class="list-group-item task-item">
 685                           <div class="col-md-2"> model3 after conversion
 686                           to allatom
 687                           {{ task.remd_model3|linebreaks }}
 688                           </div>
 689                           <div class="col-md-10">
 690                           <a
 691                           href="/myfiles/download-file/{{task.jobdirname}}/MODEL3.pdb">
 692                           <img
 693                           src="/myfiles/download-file/{{task.jobdirname}}/model3.png" width="500">
 694                           </a></div>
 695                         </li>-->
 696                         <li class="list-group-item task-item">
 697                           <div class="col-md-2"> model3
 698                           {% if not task.damino %}
 699                           after conversion to allatom
 700                           {% endif %}
 701                           {{ task.remd_model3|linebreaks }}
 702                           NGL viewer</div>
 703                           <div class="col-md-10" id="viewport_M3"
 704                           style="width:500px;height:500px;">
 705                           </div>
 706                         </li>
 707                         <li class="list-group-item task-item">
 708                <div class="col-md-12">
 709                {% if task.md_pdbref %}
 710                <button id="toggleRefM3">Reference structure on/off</button>
 711                {% endif %}
 712                <button id="toggleSidechainsM3">Side-chains on/off</button>
 713                <a class="btn btn-default"
 714                href="/myfiles/download-file/{{task.jobdirname}}/MODEL3.pdb">Download</a>
 715                </div>
 716                         </li>
 717
 718                         </div>
 719                         <div class="model">
 720 <!--                    <li class="list-group-item task-item">
 721                           <div class="col-md-2"> model4 after conversion
 722                           to allatom
 723                           {{ task.remd_model4|linebreaks }}
 724                           </div>
 725                           <div class="col-md-10">
 726                           <a
 727                           href="/myfiles/download-file/{{task.jobdirname}}/MODEL4.pdb">
 728                           <img
 729                           src="/myfiles/download-file/{{task.jobdirname}}/model4.png" width="500">
 730                           </a></div>
 731                         </li>-->
 732                         <li class="list-group-item task-item">
 733                           <div class="col-md-2"> model4
 734                           {% if not task.damino %}
 735                           after conversion to allatom
 736                           {% endif %}
 737                           {{ task.remd_model4|linebreaks }}
 738                           NGL viewer</div>
 739                           <div class="col-md-10" id="viewport_M4"
 740                           style="width:500px;height:500px;">
 741                           </div>
 742                         </li>
 743                         <li class="list-group-item task-item">
 744                <div class="col-md-12">
 745                {% if task.md_pdbref %}
 746                <button id="toggleRefM4">Reference structure on/off</button>
 747                {% endif %}
 748                <button id="toggleSidechainsM4">Side-chains on/off</button>
 749                <a class="btn btn-default"
 750                href="/myfiles/download-file/{{task.jobdirname}}/MODEL4.pdb">Download</a>
 751                </div>
 752                         </li>
 753
 754                         </div>
 755                         <div class="model">
 756 <!--                    <li class="list-group-item task-item">
 757                           <div class="col-md-2"> model5 after conversion
 758                           to allatom
 759                           {{ task.remd_model5|linebreaks }}
 760                           </div>
 761                           <div class="col-md-10">
 762                           <a
 763                           href="/myfiles/download-file/{{task.jobdirname}}/MODEL5.pdb">
 764                           <img
 765                           src="/myfiles/download-file/{{task.jobdirname}}/model5.png" width="500">
 766                           </a></div>
 767                         </li>-->
 768                         <li class="list-group-item task-item">
 769                           <div class="col-md-2"> model5
 770                           {% if not task.damino %}
 771                           after conversion to allatom
 772                           {% endif %}
 773                           {{ task.remd_model5|linebreaks }}
 774                           NGL viewer</div>
 775                           <div class="col-md-10" id="viewport_M5"
 776                           style="width:500px;height:500px;">
 777                           </div>
 778                         </li>
 779                         <li class="list-group-item task-item">
 780                <div class="col-md-12">
 781                {% if task.md_pdbref %}
 782                <button id="toggleRefM5">Reference structure on/off</button>
 783                {% endif %}
 784                <button id="toggleSidechainsM5">Side-chains on/off</button>
 785                <a class="btn btn-default"
 786                href="/myfiles/download-file/{{task.jobdirname}}/MODEL5.pdb">Download</a>
 787                </div>
 788                         </li>
 789
 790                         </div>
 791                         {% endif %}
 792
 793         {% endif %}
 794
 795         </ul>
 796 {% else %}
 797 <h2>
 798 Regular user cannot use this link.
 799 </h2>
 800 {% endif %}
 801
 802 <script src="/static/jquery.min.js"></script>
 803 <script src="https://unpkg.com/ngl"></script>
 804
 805 <script>
 806 $('.majorpointslegend').click(function(){
 807     $(this.parentNode).find('.hiders').toggle();
 808     if($(this.parentNode).find('.majorpointslegend').text()=='Show input parameters'){
 809         $(this.parentNode).find('.majorpointslegend').text('Hide input parameters');
 810     }else{
 811         $(this.parentNode).find('.majorpointslegend').text('Show input parameters');
 812     }
 813 });
 814 </script>
 815
 816 {% if task.type == "remd" %}
 817 <script>
 818 function display_model(numstr){
 819
 820 {% if task.md_pdbref %}
 821   var stage = new NGL.Stage("viewport_M"+numstr);
 822   stage.setParameters( { backgroundColor: "white",fogFar: 60, fogNear: 45 } );
 823   Promise.all([
 824       stage.loadFile( "/myfiles/download-file/{{task.jobdirname}}/plik1.pdb" ,{defaultRepresentation: false}) .then( function( o ){
 825         o.addRepresentation( "cartoon",{ name:"ref", color:"grey"
 826         })
 827         o.addRepresentation( "line", {name:"refsc",visible: false,
 828          sele:"not hydrogen and sidechainAttached"
 829         })
 830         return o
 831       }),
 832       stage.loadFile(
 833       "/myfiles/download-file/{{task.jobdirname}}/MODEL"+numstr+".pdb",{defaultRepresentation: false}) .then( function( o ){
 834  {% if task.damino %}
 835         o.addRepresentation( "licorice",{ name: "unres", color:
 836                "residueindex",colorScale:["blue","cyan", "green",
 837                "yellow","orange", "red"], sele:".CA"
 838                        })
 839         o.addRepresentation( "licorice",{ name: "unressc", visible: false, color:
 840        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
 841         , sele:"*" })
 842  {% else %}
 843         o.addRepresentation( "cartoon",{ name: "unres", color:
 844                "residueindex",colorScale:["blue","cyan", "green",
 845                "yellow","orange", "red"]
 846                        })
 847         o.addRepresentation( "line",{ name: "unressc", visible: false, color:
 848        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
 849         , sele:"not hydrogen and sidechainAttached" })
 850  {% endif %}
 851         return o
 852       })
 853   ]).then(function (ol1) {
 854    ol1[ 1 ].superpose(ol1[ 0 ], false, ".CA")
 855    ol1[ 0 ].autoView()
 856   })
 857             var ref=true;
 858             var side=false;
 859             var toggleAll = document.getElementById( "toggleRefM"+numstr );
 860             toggleAll.addEventListener( "click", function(){
 861                         ref=! ref;
 862                         stage.getRepresentationsByName(
 863                                 "ref" ).list.forEach( function( repre ){
 864                                 repre.setVisibility( !repre.visible );
 865                         } );
 866                 if (side) {
 867                         stage.getRepresentationsByName(
 868                                 "refsc" ).list.forEach( function( repre ){
 869                                 repre.setVisibility( !repre.visible );
 870                         } );
 871                 }
 872
 873             } );
 874      var toggleSidechains =document.getElementById("toggleSidechainsM"+numstr );
 875      toggleSidechains.addEventListener( "click", function(){
 876              side=!side;
 877              if (ref) {
 878                  stage.getRepresentationsByName(
 879                         "refsc" ).list.forEach( function( repre ){
 880                         repre.setVisibility( !repre.visible );
 881              } );
 882       }
 883       stage.getRepresentationsByName("unressc").list.forEach( function( repre ){
 884                         repre.setVisibility( !repre.visible );
 885         } );
 886
 887       } );
 888 {% else %}
 889   var stage = new NGL.Stage("viewport_M"+numstr);
 890   stage.setParameters( { backgroundColor: "white",fogFar: 60, fogNear: 45 } );
 891   stage.loadFile( "/myfiles/download-file/{{task.jobdirname}}/MODEL"+numstr+".pdb",{defaultRepresentation: false}) .then( function( o ){
 892  {% if task.damino %}
 893         o.addRepresentation( "licorice",{ name: "unres", color:
 894                "residueindex",colorScale:["blue","cyan", "green",
 895                "yellow","orange", "red"],sele:".CA"
 896                        });
 897         o.addRepresentation( "licorice",{ name: "unressc", visible: false, color:
 898        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
 899         , sele:"*" });
 900  {% else %}
 901         o.addRepresentation( "cartoon",{ name: "unres", color:
 902                "residueindex",colorScale:["blue","cyan", "green",
 903                "yellow","orange", "red"]
 904                        });
 905         o.addRepresentation( "line",{ name: "unressc", visible: false, color:
 906        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
 907         , sele:"not hydrogen and sidechainAttached" });
 908  {% endif %}
 909         o.autoView();
 910   })
 911      var toggleSidechains =document.getElementById("toggleSidechainsM"+numstr );
 912      toggleSidechains.addEventListener( "click", function(){
 913       stage.getRepresentationsByName("unressc").list.forEach( function( repre ){
 914                         repre.setVisibility( !repre.visible );
 915         } );
 916
 917       } );
 918
 919 {% endif %}
 920 }
 921
 922
 923 window.addEventListener("resize",
 924 function (event) {
 925       stage.handleResize();
 926 },false);
 927
 928
 929 display_model("1")
 930
 931
 932 var slideIndex = 1;
 933 var y = document.getElementsByClassName("model");
 934 var lista=[];
 935 var ii;
 936 for (ii = 0; ii < y.length; ii++) {
 937  lista.push(0)
 938 }
 939 lista[0]=1;
 940 showDivs(slideIndex);
 941
 942 function plusDivs(n) {
 943   showDivs(slideIndex += n);
 944 }
 945
 946 function showDivs(n) {
 947   var i;
 948   var x = document.getElementsByClassName("model");
 949   if (n > x.length) {slideIndex = 1}
 950   if (n < 1) {slideIndex = x.length}
 951   for (i = 0; i < x.length; i++) {
 952      x[i].style.display = "none";
 953   }
 954   x[slideIndex-1].style.display = "block";
 955
 956   if (lista[slideIndex-1] == 0 && slideIndex == 2) {
 957     display_model("2")
 958   }
 959
 960   if (lista[slideIndex-1] == 0 && slideIndex == 3) {
 961      display_model("3")
 962   }
 963
 964   if (lista[slideIndex-1] == 0 && slideIndex == 4) {
 965      display_model("4")
 966   }
 967
 968   if (lista[slideIndex-1] == 0 && slideIndex == 5) {
 969      display_model("5")
 970   }
 971
 972
 973   if (lista[slideIndex-1] == 0) {lista[slideIndex-1]=1}
 974 }
 975 </script>
 976 {% endif %}
 977
 978 {% if not task.done %}
 979 <script>
 980 function worker() {
 981   $.ajax({
 982     data:{csrfmiddlewaretoken: '{{ csrf_token }}'},
 983     url: "/refresh_done1/{{task.id}}/",
 984     type:"post",
 985     success: function(data) {
 986       document.location.reload();
 987     },
 988     complete: function() {
 989       // Schedule the next request when the current one's complete
 990       setTimeout(worker, 30000);
 991     }
 992   });
 993 };
 994 $(document).ready(function() {
 995   // run the first time; all subsequent calls will take care of themselves
 996   setTimeout(worker, 30000);
 997 });
 998 </script>
 999 {% endif %}
1000
1001
1002 {% if task.type == "min" %}
1003 <script>
1004 window.addEventListener("resize",
1005      function (event) {
1006      stage.handleResize();
1007      },false);
1008
1009 var stage_unres = new NGL.Stage("viewport_unres");
1010 stage_unres.setParameters( { backgroundColor: "white" } );
1011 /**
1012 [color_Red, color_Green, color_Blue, ellipsoid_width, ellipsoid_length ]
1013 */
1014 var resdb = {   'CYS': [1.000, 1.000, 0.000, 1.33741, 2.96868],
1015                 'MET': [0.000, 1.000, 0.000, 1.36694, 3.08863],
1016                 'PHE': [0.000, 0.392, 0.000, 1.48323, 3.04238],
1017                 'ILE': [0.000, 1.000, 0.000, 1.44098, 3.17389],
1018                 'LEU': [0.000, 1.000, 0.000, 1.51054, 2.52078],
1019                 'VAL': [0.000, 1.000, 0.000, 1.42072, 2.68924],
1020                 'TRP': [0.000, 0.392, 0.000, 1.23867, 3.47403],
1021                 'TYR': [0.596, 0.984, 0.596, 1.23060, 3.35434],
1022                 'ALA': [0.000, 1.000, 0.000, 1.23266, 1.72686],
1023                 'GLY': [1.000, 1.000, 1.000, 1.24626, 1.11383],
1024                 'THR': [1.000, 0.000, 1.000, 1.28674, 2.59210],
1025                 'SER': [1.000, 0.000, 1.000, 1.22820, 1.68800],
1026                 'GLN': [1.000, 0.000, 1.000, 1.24239, 2.22201],
1027                 'ASN': [1.000, 0.000, 1.000, 1.24447, 2.24946],
1028                 'GLU': [1.000, 0.000, 0.000, 1.25448, 2.05551],
1029                 'ASP': [1.000, 0.000, 0.000, 1.25417, 1.77556],
1030                 'HIS': [1.000, 0.000, 1.000, 1.21103, 3.02627],
1031                 'ARG': [0.000, 0.000, 1.000, 1.13573, 3.25143],
1032                 'LYS': [0.000, 0.000, 1.000, 1.22604, 4.50054],
1033                 'PRO': [0.000, 1.000, 1.000, 1.35131, 2.20525]
1034                         };
1035 stage_unres.loadFile("/myfiles/download-file/{{task.jobdirname}}/file_GB000.pdb", {defaultRepresentation: false}).then
1036        (function ( o ){
1037        var shape = new NGL.Shape("shape")
1038        var chain = ""
1039        o.addRepresentation("licorice");
1040        o.structure.eachAtom(function(atom){
1041          if (atom.atomname == "CA" && atom.chainname == chain) {
1042           px=CAx+(atom.x-CAx)/2;
1043           py=CAy+(atom.y-CAy)/2;
1044           pz=CAz+(atom.z-CAz)/2;
1045           shape.addSphere([px,py,pz],[0.643, 0.933, 0.960],0.6,"p");
1046          }
1047          if (atom.atomname == "CA") {
1048          chain= atom.chainname
1049          CAx= atom.x;
1050          CAy= atom.y
1051          CAz= atom.z
1052          }
1053          if (atom.atomname == "CB") {
1054           mx = (atom.x-CAx);
1055           my = (atom.y-CAy);
1056           mz = (atom.z-CAz);
1057           norm=Math.sqrt(mx*mx+my*my+mz*mz);
1058           res=atom.resname;
1059           var longaxis=resdb[res][4]
1060           var shortaxis=resdb[res][3]
1061           mx = mx /norm*longaxis;
1062           my = my /norm*longaxis;
1063           mz = mz /norm*longaxis;
1064           resn=res+atom.resno
1065           shape.addEllipsoid([ atom.x, atom.y, atom.z ],
1066               [ resdb[res][0], resdb[res][1], resdb[res][2]],
1067               shortaxis, [ mx, my, mz ], [ 0, shortaxis, 0 ],resn);
1068          }
1069        });
1070        var shapeComp = stage_unres.addComponentFromObject(shape)
1071        shapeComp.addRepresentation("buffer")
1072        o.autoView();
1073 });
1074
1075
1076
1077 var stage = new NGL.Stage("viewport_min");
1078 stage.setParameters( { backgroundColor: "white" } );
1079 Promise.all([
1080   stage.loadFile( "/myfiles/download-file/{{task.jobdirname}}/file_GB000.pdb" ,{defaultRepresentation: false}) .then( function( o ){
1081      o.addRepresentation( "backbone",{ color:
1082        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
1083      })
1084      o.addRepresentation( "licorice",{ color:
1085        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange","red"]
1086      })
1087      return o
1088   }),
1089
1090   stage.loadFile("/myfiles/download-file/{{task.jobdirname}}/plik.pdb",{defaultRepresentation: false}) .then( function( o ){
1091      o.addRepresentation( "backbone",{ name: "allatom", color:
1092        "residueindex",colorScale:["blue","cyan", "green","yellow","orange", "red"]
1093      })
1094      o.addRepresentation( "line",{ name: "allatomsc", color:
1095        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
1096        ,sele:"not hydrogen and sidechainAttached"
1097      })
1098      return o
1099   })
1100 ]).then(function (ol) {
1101    ol[ 0 ].superpose(ol[ 1 ], false, ".CA")
1102    ol[ 0 ].autoView()
1103 })
1104
1105 var allatom=true;
1106 var side=true;
1107 var toggleAll = document.getElementById( "toggleAllatom" );
1108 toggleAll.addEventListener( "click", function(){
1109                         allatom=! allatom;
1110                         stage.getRepresentationsByName(
1111                                 "allatom" ).list.forEach( function( repre ){
1112                                 repre.setVisibility( !repre.visible );
1113                         } );
1114             if (side) {
1115                         stage.getRepresentationsByName(
1116                                 "allatomsc" ).list.forEach( function( repre ){
1117                                 repre.setVisibility( !repre.visible );
1118                         } );
1119             }
1120 } );
1121 var toggleSidechains = document.getElementById("toggleSidechains2" );
1122 toggleSidechains.addEventListener( "click", function(){
1123           side=!side;
1124           if (allatom) {
1125                 stage.getRepresentationsByName(
1126                         "allatomsc" ).list.forEach( function( repre ){
1127                                 repre.setVisibility( !repre.visible );
1128                 } );
1129
1130           }
1131           stage.getRepresentationsByName("licorice").list.forEach( function( repre ){
1132                 repre.setVisibility( !repre.visible );
1133           } );
1134
1135 } );
1136 </script>
1137 {% endif %}
1138
1139 {% if task.type == "md" and task.md_start == "pdbstart" %}
1140 <script>
1141 window.addEventListener("resize",
1142      function (event) {
1143      stage.handleResize();
1144      },false);
1145
1146 var stage = new NGL.Stage("viewport_putty");
1147 stage.setParameters( { backgroundColor: "white" } );
1148
1149 var tooltip = document.createElement("div")
1150 Object.assign(tooltip.style, {
1151   display: "none",
1152   position: "fixed",
1153   zIndex: 10,
1154   pointerEvents: "none",
1155   backgroundColor: "rgba( 0, 0, 0, 0.6 )",
1156   color: "lightgrey",
1157   padding: "8px",
1158   fontFamily: "sans-serif"
1159 })
1160 document.body.appendChild(tooltip)
1161
1162 stage.loadFile("/myfiles/download-file/{{task.jobdirname}}/plik_bf.pdb", {defaultRepresentation: false}).then
1163        (function ( o ){
1164        o.addRepresentation("tube",{ color: "bfactor" , scale: 0.25,
1165        sele: "backbone",
1166        radius:"bfactor",
1167        colorScale:["blue","cyan", "green", "yellow","orange", "red"] });
1168        o.addRepresentation("licorice",{sele:"sidechainAttached and CYS and not hydrogen"});
1169        o.autoView();
1170 })
1171
1172 // remove default hoverPick mouse action
1173 stage.mouseControls.remove("hoverPick")
1174
1175 stage.signals.hovered.add(function (pickingProxy) {
1176   if (pickingProxy && (pickingProxy.atom || pickingProxy.bond)) {
1177     var atom = pickingProxy.atom || pickingProxy.closestBondAtom
1178     var mp = pickingProxy.mouse.position
1179     var bf= atom.bfactor.toFixed(2)
1180     tooltip.innerText = atom.qualifiedName()+" Fluctuation="+ bf
1181     tooltip.style.bottom = window.innerHeight - mp.y + 3 + "px"
1182     tooltip.style.left = mp.x + 3 + "px"
1183     tooltip.style.display = "block"
1184   } else {
1185     tooltip.style.display = "none"
1186   }
1187 })
1188 </script>
1189 {% endif %}
1190
1191 {% if task.type == "md" and task.md_mdpdb %}
1192 <script>
1193 window.addEventListener("resize",
1194      function (event) {
1195      stage.handleResize();
1196      },false);
1197
1198       var stage = new NGL.Stage("viewport_traj");
1199       stage.setParameters( { backgroundColor: "white" } );
1200       stage.setParameters( { cameraType: "orthographic" } );
1201       var traj;
1202       var player;
1203       stage.loadFile( "/myfiles/download-file/{{task.jobdirname}}/file_MD000.pdb", {
1204        asTrajectory: true } ) .then( function( o ){
1205         o.setName ("unres_md");
1206         o.addRepresentation( "backbone",{ color:
1207        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
1208         });
1209         o.addRepresentation( "licorice",{ color:
1210        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
1211         });
1212         o.setPosition([0, 0, 100]);
1213         o.autoView();
1214         o.addTrajectory();
1215       });
1216
1217             var toggleSidechains = document.getElementById( "toggleSidechains1" );
1218             toggleSidechains.addEventListener( "click", function(){
1219                                                         stage.getRepresentationsByName( "licorice" ).list.forEach( function( repre ){
1220                                                                         repre.setVisibility( !repre.visible );
1221                                                         } );
1222             } );
1223
1224
1225       function numberWithCommas(x) {
1226                 return x.toString().replace(/\B(?=(\d{3})+(?!\d))/g, ",");
1227       }
1228       var toggleRunMDs = document.getElementById( "toggleRunMDs" );
1229       var isRunning = false;
1230       toggleRunMDs.addEventListener( "click", function(){
1231          var trajComp = stage.getComponentsByName("unres_md").list[0].trajList[0];
1232          var player = new NGL.TrajectoryPlayer(trajComp.trajectory, {timeout: 10, mode: "once"});
1233                                 if( !isRunning ){
1234                                         player.play();
1235                                         isRunning = true;
1236
1237                     trajComp.signals.frameChanged.add(function(){
1238                       var fnum=trajComp.trajectory.currentFrame+1;
1239                       clipRange.value = fnum;
1240                       clipRange_val.innerHTML = numberWithCommas(parseInt(clipRange.value*1));
1241                     });
1242
1243                                 }else{
1244                                         player.play();
1245                                         player.pause();
1246                                         isRunning = false;
1247                                 }
1248       } );
1249       var clipRange = document.getElementById( "clipRange" );
1250       var clipRange_val = document.getElementById( "clipRange_val" );
1251       clipRange.oninput = function( e ){
1252                 var trajComp = stage.getComponentsByName("unres_md").list[0].trajList[0];
1253                 trajComp.setFrame(e.target.value-1)
1254                 clipRange_val.innerHTML = numberWithCommas(parseInt(e.target.value*1));
1255       };
1256
1257 </script>
1258 {% endif %}
1259
1260
1261 {% endblock %}