django_simple/todo/templates/details1.html

   1 {% extends "base.html" %}
   2
   3 {% load i18n lazysignup_tags %}
   4 {% block content %}
   5
   6 {% if task.owner|is_lazy_user %}
   7
   8 <ul class="list-group">
   9
  10 <li class="list-group-item new-task-item task-item">
  11
  12 <div class="col-md-2 form-group">
  13 <form action="/refresh_done1/{{task.id}}/" method="post">
  14 {% csrf_token %}
  15 <input type="submit" class="btn" value="Refresh" name="refreshbtn">
  16 </form>
  17 </div>
  18
  19 <div class="col-md-10 form-group">
  20 <h5 style="text-align:right;float:right;">
  21 {% if not task.done %}
  22  {% if task.running > 0  %}
  23   {% if task.running == 100  %}
  24   postprocessing
  25   {% else %}
  26   running
  27   {% endif %}
  28  {% else %}
  29   waiting in the queue to start
  30  {% endif %}
  31 {% endif %}
  32 </h5>
  33 </div>
  34 </li>
  35 </ul>
  36
  37 <h3> Task <b>{{ task.name }}</b></h3>
  38 Created {{ task.created_date  }}
  39         <ul class="list-group">
  40
  41                         <li class="list-group-item task-item">
  42                                 <div class="col-md-4"> done ?</div>
  43                                 <div class="col-md-8">
  44                                         {% if task.done %}
  45                                                 <span class="fa fa-check-square-o"></span>
  46                                         {% else %}
  47                                           {% if task.running > 0  %}
  48                                                 <span class="fa fa-spinner
  49                                                 fa-spin"></span>
  50                                                 {{ task.running }}%
  51                                           {% else %}
  52                                                 <span class="fa fa-square-o"></span>
  53                                           {% endif %}
  54                                         {% endif %}
  55
  56                                 </div>
  57                         </li>
  58 <div>
  59     <fieldset class="majorpoints">
  60     <legend class="majorpointslegend"
  61     style="background-color:#d3d3d3;cursor: pointer;">Show input parameters</legend>
  62     <div class="hiders" style="display:none" >
  63
  64                         <li class="list-group-item task-item">
  65                             <div class="col-md-6"> type </div>
  66                             <div class="col-md-6">{{ task.type }}</div>
  67                         </li>
  68
  69                         <li class="list-group-item task-item">
  70                             <div class="col-md-6"> force field </div>
  71                             <div class="col-md-6">{{ task.unres_ff }}</div>
  72                         </li>
  73
  74                         <li class="list-group-item task-item">
  75                             <div class="col-md-4"> sequence </div>
  76                             <div class="col-md-8 monospace">{{ task.md_seq}}</div>
  77                         </li>
  78
  79                         <li class="list-group-item task-item">
  80                             <div class="col-md-4"> secondary structure
  81                             restraints </div>
  82                             <div class="col-md-8 monospace">{{ task.md_2d}}</div>
  83                         </li>
  84
  85
  86                         <li class="list-group-item task-item">
  87                             <div class="col-md-6"> SSBOND </div>
  88                             <div class="col-md-6">{{ task.ssbond}}</div>
  89                         </li>
  90
  91
  92         {% if task.type == "min" %}
  93
  94
  95                         <li class="list-group-item task-item">
  96                             <div class="col-md-6"> algorithm</div>
  97                             <div class="col-md-6">{{ task.min_choice }}</div>
  98                         </li>
  99                         <li class="list-group-item task-item">
 100                             <div class="col-md-6"> overlap</div>
 101                             <div class="col-md-6">{{ task.min_overlap }}</div>
 102                         </li>
 103                         <li class="list-group-item task-item">
 104                             <div class="col-md-6"> searchsc</div>
 105                             <div class="col-md-6">{{ task.min_searchsc }}</div>
 106                         </li>
 107                         <li class="list-group-item task-item">
 108                             <div class="col-md-6"> maxmin</div>
 109                             <div class="col-md-6">{{ task.min_maxmin }}</div>
 110                         </li>
 111                         <li class="list-group-item task-item">
 112                             <div class="col-md-6"> maxfun</div>
 113                             <div class="col-md-6">{{ task.min_maxfun }}</div>
 114                         </li>
 115                         <li class="list-group-item task-item">
 116                             <div class="col-md-6"> pdbout</div>
 117                             <div class="col-md-6">{{ task.min_pdbout }}</div>
 118                         </li>
 119                         <li class="list-group-item task-item">
 120                             <div class="col-md-6"> input pdb </div>
 121                             <div class="col-md-6">{{ task.myfile1 }}</div>
 122                         </li>
 123                         <li class="list-group-item task-item">
 124                             <div class="col-md-6"> pdb code</div>
 125                             <div class="col-md-6">{{ task.pdbcode }}</div>
 126                         </li>
 127                         <li class="list-group-item task-item">
 128                             <div class="col-md-6"> unres_pdb</div>
 129                             <div class="col-md-6">{{ task.min_unres_pdb }}</div>
 130                         </li>
 131
 132         {% endif %}
 133         {% if task.type == "md" %}
 134                         <li class="list-group-item task-item">
 135                             <div class="col-md-6"> starting </div>
 136                             <div class="col-md-6">{{ task.md_start}}</div>
 137                         </li>
 138
 139                         <li class="list-group-item task-item">
 140                             <div class="col-md-6"> input pdb </div>
 141                             <div class="col-md-6">{{ task.myfile1 }}</div>
 142                         </li>
 143                         <li class="list-group-item task-item">
 144                             <div class="col-md-6"> pdb code</div>
 145                             <div class="col-md-6">{{ task.pdbcode }}</div>
 146                         </li>
 147                         <li class="list-group-item task-item">
 148                             <div class="col-md-6"> seed </div>
 149                             <div class="col-md-6">{{ task.md_seed}}</div>
 150                         </li>
 151                         <li class="list-group-item task-item">
 152                             <div class="col-md-6"> pdbref </div>
 153                             <div class="col-md-6">{{ task.md_pdbref}}</div>
 154                         </li>
 155                         <li class="list-group-item task-item">
 156                             <div class="col-md-6"> respa </div>
 157                             <div class="col-md-6">{{ task.md_respa}}</div>
 158                         </li>
 159                         <li class="list-group-item task-item">
 160                             <div class="col-md-6"> temperature </div>
 161                             <div class="col-md-6">{{ task.md_temp}}</div>
 162                         </li>
 163                         <li class="list-group-item task-item">
 164                             <div class="col-md-6"> nstep </div>
 165                             <div class="col-md-6">{{ task.md_nstep}}</div>
 166                         </li>
 167                         <li class="list-group-item task-item">
 168                             <div class="col-md-6"> ntwe </div>
 169                             <div class="col-md-6">{{ task.md_ntwe}}</div>
 170                         </li>
 171                         <li class="list-group-item task-item">
 172                             <div class="col-md-6"> ntwx </div>
 173                             <div class="col-md-6">{{ task.md_ntwx}}</div>
 174                         </li>
 175                         <li class="list-group-item task-item">
 176                             <div class="col-md-6"> dt </div>
 177                             <div class="col-md-6">{{ task.md_dt}}</div>
 178                         </li>
 179                         <li class="list-group-item task-item">
 180                             <div class="col-md-6"> thermostat </div>
 181                             <div class="col-md-6">{{ task.md_lang}}</div>
 182                         </li>
 183
 184                         {% if task.md_lang == "berendsen" %}
 185
 186                         <li class="list-group-item task-item">
 187                             <div class="col-md-6"> tau </div>
 188                             <div class="col-md-6">{{ task.md_tau}}</div>
 189                         </li>
 190
 191                         {% else %}
 192
 193                         <li class="list-group-item task-item">
 194                             <div class="col-md-6"> scal_fric </div>
 195                             <div class="col-md-6">{{ task.md_scal_fric}}</div>
 196                         </li>
 197
 198                         {% endif %}
 199
 200                         <li class="list-group-item task-item">
 201                             <div class="col-md-6"> mdpdb </div>
 202                             <div class="col-md-6">{{ task.md_mdpdb}}</div>
 203                         </li>
 204                         <li class="list-group-item task-item">
 205                             <div class="col-md-6"> RESPA </div>
 206                             <div class="col-md-6">{{ task.md_respa}}</div>
 207                         </li>
 208
 209
 210         {% endif %}
 211
 212         {% if task.type == "remd" %}
 213
 214                         <li class="list-group-item task-item">
 215                             <div class="col-md-6"> nrep </div>
 216                             <div class="col-md-6">{{ task.remd_nrep}}</div>
 217                         </li>
 218                         <li class="list-group-item task-item">
 219                             <div class="col-md-6"> starting </div>
 220                             <div class="col-md-6">{{ task.md_start}}</div>
 221                         </li>
 222
 223                         <li class="list-group-item task-item">
 224                             <div class="col-md-6"> input pdb </div>
 225                             <div class="col-md-6">{{ task.myfile1 }}</div>
 226                         </li>
 227                         <li class="list-group-item task-item">
 228                             <div class="col-md-6"> pdb code</div>
 229                             <div class="col-md-6">{{ task.pdbcode }}</div>
 230                         </li>
 231                         <li class="list-group-item task-item">
 232                             <div class="col-md-6"> seed </div>
 233                             <div class="col-md-6">{{ task.md_seed}}</div>
 234                         </li>
 235                         <li class="list-group-item task-item">
 236                             <div class="col-md-6"> pdbref </div>
 237                             <div class="col-md-6">{{ task.md_pdbref}}</div>
 238                         </li>
 239                         <li class="list-group-item task-item">
 240                             <div class="col-md-6"> respa </div>
 241                             <div class="col-md-6">{{ task.md_respa}}</div>
 242                         </li>
 243                         <li class="list-group-item task-item">
 244                             <div class="col-md-6"> nstep </div>
 245                             <div class="col-md-6">{{ task.md_nstep}}</div>
 246                         </li>
 247                         <li class="list-group-item task-item">
 248                             <div class="col-md-6"> ntwe </div>
 249                             <div class="col-md-6">{{ task.md_ntwe}}</div>
 250                         </li>
 251                         <li class="list-group-item task-item">
 252                             <div class="col-md-6"> nstex </div>
 253                             <div class="col-md-6">{{ task.remd_nstex}}</div>
 254                         </li>
 255                         <li class="list-group-item task-item">
 256                             <div class="col-md-6"> ntwx </div>
 257                             <div class="col-md-6">{{ task.md_ntwx}}</div>
 258                         </li>
 259                         <li class="list-group-item task-item">
 260                             <div class="col-md-6"> dt </div>
 261                             <div class="col-md-6">{{ task.md_dt}}</div>
 262                         </li>
 263                         <li class="list-group-item task-item">
 264                             <div class="col-md-6"> thermostat </div>
 265                             <div class="col-md-6">{{ task.md_lang}}</div>
 266                         </li>
 267
 268                         {% if task.md_lang == "berendsen" %}
 269
 270                         <li class="list-group-item task-item">
 271                             <div class="col-md-6"> tau </div>
 272                             <div class="col-md-6">{{ task.md_tau}}</div>
 273                         </li>
 274
 275                         {% else %}
 276
 277                         <li class="list-group-item task-item">
 278                             <div class="col-md-6"> scal_fric </div>
 279                             <div class="col-md-6">{{ task.md_scal_fric}}</div>
 280                         </li>
 281
 282                         {% endif %}
 283
 284                         <li class="list-group-item task-item">
 285                             <div class="col-md-6"> RESPA </div>
 286                             <div class="col-md-6">{{ task.md_respa}}</div>
 287                         </li>
 288
 289                         <li class="list-group-item task-item">
 290                             <div class="col-md-6"> temperatures </div>
 291                             <div class="col-md-6">{{ task.remd_multi_t}}</div>
 292                         </li>
 293                         <li class="list-group-item task-item">
 294                             <div class="col-md-6"> multiplex </div>
 295                             <div class="col-md-6">{{ task.remd_multi_m}}</div>
 296                         </li>
 297                         <li class="list-group-item task-item">
 298                             <div class="col-md-6"> temperature for clustering</div>
 299                             <div class="col-md-6">{{ task.remd_cluter_temp}}</div>
 300                         </li>
 301                         {% if task.saxs_data != "" %}
 302                         <li class="list-group-item task-item">
 303                             <div class="col-md-6"> wsaxs </div>
 304                             <div class="col-md-6">{{ task.wsaxs }}</div>
 305                         </li>
 306                         <li class="list-group-item task-item">
 307                             <div class="col-md-6"> scal_rad (saxs) </div>
 308                             <div class="col-md-6">{{ task.scal_rad }}</div>
 309                         </li>
 310                         <li class="list-group-item task-item">
 311                             <div class="col-md-6"> saxs distribution </div>
 312                             <div class="col-md-6"><pre> {{ task.saxs_data }}</pre></div>
 313                         </li>
 314                         {% endif %}
 315
 316         {% endif %}
 317
 318                         <li class="list-group-item task-item">
 319                             <div class="col-md-6"> Box X Y Z</div>
 320                             <div class="col-md-2">{{ task.boxx}}</div>
 321                             <div class="col-md-2">{{ task.boxy}}</div>
 322                             <div class="col-md-2">{{ task.boxz}}</div>
 323                         </li>
 324
 325 </div>
 326 </div>
 327         <p>
 328         <h3> Results </h3>
 329                         <li class="list-group-item task-item">
 330                             <div class="col-md-4"> Directory </div>
 331                             <div class="col-md-8">
 332                             <a href="/myfiles/list/{{task.jobdirname}}/">
 333                             {{ task.jobdirname }}
 334                             </a>
 335                             </div>
 336                         </li>
 337
 338
 339         {% if task.done %}
 340
 341                         {% if task.type == "min" %}
 342
 343                         <li class="list-group-item task-item">
 344                             <div class="col-md-2"> Etot </div>
 345                             <div class="col-md-10">{{ task.etot }}</div>
 346                         </li>
 347
 348                         <li class="list-group-item task-item">
 349                           <div class="col-md-2"> UNRES model </div>
 350                           <div class="col-md-10">
 351                           <a
 352                            href="/myfiles/download-file/{{task.jobdirname}}/unres.pse">
 353                           <img
 354                           src="/myfiles/download-file/{{task.jobdirname}}/unres.png"
 355                           width="500"></a> </div>
 356                         </li>
 357
 358 <!--
 359                         <li class="list-group-item task-item">
 360                           <div class="col-md-2"> Structure overlap </div>
 361                           <div class="col-md-10"> <img
 362                           src="/myfiles/download-file/{{task.jobdirname}}/unres_overlap.png"
 363                           width="500"> </div>
 364                         </li>
 365 -->
 366                         <li class="list-group-item task-item">
 367                           <div class="col-md-2"> Structure overlap NGL viewer</div>
 368                           <div class="col-md-10" id="viewport_min"
 369                           style="width:500px;height:500px;">
 370                           </div>
 371                         </li>
 372                         <li class="list-group-item task-item">
 373                <div class="col-md-12">
 374                <button id="toggleAllatom">Input structure on/off</button>
 375                <button id="toggleSidechains2">Side-chains on/off</button>
 376                </div>
 377                         </li>
 378                         {% endif %}
 379
 380                         <li class="list-group-item task-item">
 381                             <div class="col-md-2"> Results </div>
 382                             <div class="col-md-10">{{ task.results_text|linebreaks }}</div>
 383                         </li>
 384
 385                         {% if task.type == "md" %}
 386
 387                         <li class="list-group-item task-item">
 388                           <div class="col-md-2"> Temperature histogram </div>
 389                           <div class="col-md-10"> <img
 390                           src="/myfiles/download-file/{{task.jobdirname}}/temp_hist.png"
 391                           width="500"> </div>
 392                         </li>
 393
 394                         <li class="list-group-item task-item">
 395                           <div class="col-md-2"> Potential energy </div>
 396                           <div class="col-md-10"> <img
 397                           src="/myfiles/download-file/{{task.jobdirname}}/md_ene.png"
 398                           width="500"> </div>
 399                         </li>
 400
 401                             <li class="list-group-item task-item">
 402                             <div class="col-md-2"> Movie </div>
 403                             <div class="col-md-10">
 404
 405                             <video width="500" height="400" preload controls>
 406                             <source
 407                             src="/myfiles/download-file/{{task.jobdirname}}/md.ogv"
 408                             type="video/ogg; codecs=theora"> </source>
 409                             </video>
 410
 411                             </div>
 412                             </li>
 413
 414 {% if task.md_mdpdb %}
 415                         <li class="list-group-item task-item">
 416                           <div class="col-md-2"> Trajectory NGL viewer</div>
 417                           <div class="col-md-10" id="viewport_traj"
 418                           style="width:500px;height:500px;">
 419                           </div>
 420                         </li>
 421                         <li class="list-group-item task-item">
 422                <div class="col-md-6">
 423 <input id="clipRange" type="range" value=0 min=0 max= {% widthratio task.md_nstep task.md_ntwx 1 %} step=1 ></input><span id="clipRange_val">0</span> frame
 424 </div>
 425 <div class="col-md-6">
 426 <button id="toggleRunMDs">run/pause MD</button>
 427 <button id="toggleSidechains1">side-chains on/off</button>
 428 </div>
 429                         </li>
 430
 431 {% endif %}
 432
 433                         <li class="list-group-item task-item">
 434                           <div class="col-md-2"> Radius of gyration based
 435                           on C<sup>α</sup> coordinates </div>
 436                           <div class="col-md-10"> <img
 437                           src="/myfiles/download-file/{{task.jobdirname}}/md_gyr.png"
 438                           width="500"> </div>
 439                         </li>
 440
 441
 442
 443                            {% if task.md_pdbref %}
 444                         <li class="list-group-item task-item">
 445                           <div class="col-md-2"> RMSD </div>
 446                           <div class="col-md-10"> <img
 447                           src="/myfiles/download-file/{{task.jobdirname}}/md_rms.png"
 448                           width="500"> </div>
 449                         </li>
 450
 451                         <li class="list-group-item task-item">
 452                           <div class="col-md-2"> fraction of native
 453                           side-chain concacts </div>
 454                           <div class="col-md-10"> <img
 455                           src="/myfiles/download-file/{{task.jobdirname}}/md_fracn.png"
 456                           width="500"> </div>
 457                         </li>
 458
 459                            {% endif %}
 460
 461                            {% if task.md_start == "pdbstart" %}
 462                         <li class="list-group-item task-item">
 463                           <div class="col-md-2"> fluctuations </div>
 464                           <div class="col-md-10"> <img
 465                           src="/myfiles/download-file/{{task.jobdirname}}/fluct_plot.png"
 466                           width="500"> </div>
 467                         </li>
 468 <!--
 469                         <li class="list-group-item task-item">
 470                           <div class="col-md-2"> fluctuations putty on
 471                           starting structure</div>
 472                           <div class="col-md-10">
 473                           <a
 474                           href="/myfiles/download-file/{{task.jobdirname}}/fluct.pse">
 475                           <img
 476                           src="/myfiles/download-file/{{task.jobdirname}}/fluct.png"
 477                           width="500"></a> </div>
 478                         </li>
 479 -->
 480                         <li class="list-group-item task-item">
 481                           <div class="col-md-2"> fluctuations putty on
 482                           starting structure NGL viewer</div>
 483                           <div class="col-md-10" id="viewport_putty"
 484                           style="width:500px;height:500px;">
 485                           </div>
 486                         </li>
 487
 488
 489                            {% endif %}
 490
 491
 492
 493                         {% endif %}
 494
 495                         {% if task.type == "remd" %}
 496
 497                         <li class="list-group-item task-item">
 498                           <div class="col-md-2"> Energy histogram </div>
 499                           <div class="col-md-10"> <img
 500                           src="/myfiles/download-file/{{task.jobdirname}}/remd_ene_hist.png"
 501                           width="500"> </div>
 502                         </li>
 503
 504                         <li class="list-group-item task-item">
 505                           <div class="col-md-2"> Energy vs. temperature </div>
 506                           <div class="col-md-10"> <img
 507                           src="/myfiles/download-file/{{task.jobdirname}}/remd_Tene.png"
 508                           width="500"> </div>
 509                         </li>
 510
 511                         <li class="list-group-item task-item">
 512                           <div class="col-md-2"> Cv vs. temperature </div>
 513                           <div class="col-md-10"> <img
 514                           src="/myfiles/download-file/{{task.jobdirname}}/remd_cv.png"
 515                           width="500"> </div>
 516                         </li>
 517
 518                            {% if task.md_pdbref %}
 519
 520                         <li class="list-group-item task-item">
 521                           <div class="col-md-2"> Average RMSD vs. temperature </div>
 522                           <div class="col-md-10"> <img
 523                           src="/myfiles/download-file/{{task.jobdirname}}/remd_rmsd.png"
 524                           width="500"> </div>
 525                         </li>
 526
 527                         <li class="list-group-item task-item">
 528                           <div class="col-md-2"> potential energy vs. RMSD</div>
 529                           <div class="col-md-10"> <img
 530                           src="/myfiles/download-file/{{task.jobdirname}}/remd_ene_rms.png"
 531                           width="500"> </div>
 532                         </li>
 533
 534                         <li class="list-group-item task-item">
 535                           <div class="col-md-2"> RMSD vs. step*replica
 536                           colored by bath temperature</div>
 537                           <div class="col-md-10"> <img
 538                           src="/myfiles/download-file/{{task.jobdirname}}/remd_step_rms.png"
 539                           width="500"> </div>
 540                         </li>
 541
 542
 543                            {% endif %}
 544
 545                         <li class="list-group-item task-item">
 546                           <div class="col-md-2"> exchanges (walk in T) </div>
 547                           <div class="col-md-10"> <img
 548                           src="/myfiles/download-file/{{task.jobdirname}}/remd_ex.png"
 549                           width="500"> </div>
 550                         </li>
 551
 552                            {% if task.saxs_data != "" %}
 553                         <li class="list-group-item task-item">
 554                           <div class="col-md-2"> P(r) of input SAXS data and
 555                           calculated for 5 models and the input pdb</div>
 556                           <div class="col-md-10"> <img
 557                           src="/myfiles/download-file/{{task.jobdirname}}/saxs.png"
 558                           width="500"> </div>
 559                         </li>
 560                            {% endif %}
 561
 562         <li class="list-group-item task-item">
 563         <div class="col-md-4">
 564         <button onclick="plusDivs(-1)">&#10094;</button>
 565         </div>
 566         <div class="col-md-6">
 567         select model
 568         </div>
 569         <div class="col-md-2">
 570         <button onclick="plusDivs(1)">&#10095;</button>
 571         </div>
 572         </li>
 573
 574                         <div class="model">
 575                         <li class="list-group-item task-item">
 576                           <div class="col-md-2"> model1 after conversion
 577                           to allatom
 578                           {{ task.remd_model1|linebreaks }}
 579                           </div>
 580                           <div class="col-md-10">
 581                           <a
 582                           href="/myfiles/download-file/{{task.jobdirname}}/MODEL1.pdb">
 583                           <img
 584                           src="/myfiles/download-file/{{task.jobdirname}}/model1.png" width="500">
 585                           </a></div>
 586                         </li>
 587                         </div>
 588                         <div class="model">
 589                         <li class="list-group-item task-item">
 590                           <div class="col-md-2"> model2 after conversion
 591                           to allatom
 592                           {{ task.remd_model2|linebreaks }}
 593                           </div>
 594                           <div class="col-md-10">
 595                           <a
 596                           href="/myfiles/download-file/{{task.jobdirname}}/MODEL2.pdb">
 597                           <img
 598                           src="/myfiles/download-file/{{task.jobdirname}}/model2.png" width="500">
 599                           </a></div>
 600                         </li>
 601                         </div>
 602                         <div class="model">
 603                         <li class="list-group-item task-item">
 604                           <div class="col-md-2"> model3 after conversion
 605                           to allatom
 606                           {{ task.remd_model3|linebreaks }}
 607                           </div>
 608                           <div class="col-md-10">
 609                           <a
 610                           href="/myfiles/download-file/{{task.jobdirname}}/MODEL3.pdb">
 611                           <img
 612                           src="/myfiles/download-file/{{task.jobdirname}}/model3.png" width="500">
 613                           </a></div>
 614                         </li>
 615                         </div>
 616                         <div class="model">
 617                         <li class="list-group-item task-item">
 618                           <div class="col-md-2"> model4 after conversion
 619                           to allatom
 620                           {{ task.remd_model4|linebreaks }}
 621                           </div>
 622                           <div class="col-md-10">
 623                           <a
 624                           href="/myfiles/download-file/{{task.jobdirname}}/MODEL4.pdb">
 625                           <img
 626                           src="/myfiles/download-file/{{task.jobdirname}}/model4.png" width="500">
 627                           </a></div>
 628                         </li>
 629                         </div>
 630                         <div class="model">
 631                         <li class="list-group-item task-item">
 632                           <div class="col-md-2"> model5 after conversion
 633                           to allatom
 634                           {{ task.remd_model5|linebreaks }}
 635                           </div>
 636                           <div class="col-md-10">
 637                           <a
 638                           href="/myfiles/download-file/{{task.jobdirname}}/MODEL5.pdb">
 639                           <img
 640                           src="/myfiles/download-file/{{task.jobdirname}}/model5.png" width="500">
 641                           </a></div>
 642                         </li>
 643                         </div>
 644                         {% endif %}
 645
 646         {% endif %}
 647
 648         </ul>
 649 {% else %}
 650 <h2>
 651 Regular user cannot use this link.
 652 </h2>
 653 {% endif %}
 654
 655 <script src="/static/jquery.min.js"></script>
 656
 657 <script>
 658 $('.majorpointslegend').click(function(){
 659     $(this.parentNode).find('.hiders').toggle();
 660     if($(this.parentNode).find('.majorpointslegend').text()=='Show input parameters'){
 661         $(this.parentNode).find('.majorpointslegend').text('Hide input parameters');
 662     }else{
 663         $(this.parentNode).find('.majorpointslegend').text('Show input parameters');
 664     }
 665 });
 666 </script>
 667
 668 {% if task.type == "remd" %}
 669 <script>
 670 var slideIndex = 1;
 671 showDivs(slideIndex);
 672
 673 function plusDivs(n) {
 674   showDivs(slideIndex += n);
 675 }
 676
 677 function showDivs(n) {
 678   var i;
 679   var x = document.getElementsByClassName("model");
 680   if (n > x.length) {slideIndex = 1}
 681   if (n < 1) {slideIndex = x.length}
 682   for (i = 0; i < x.length; i++) {
 683      x[i].style.display = "none";
 684   }
 685   x[slideIndex-1].style.display = "block";
 686 }
 687 </script>
 688 {% endif %}
 689
 690 {% if not task.done %}
 691 <script>
 692 function worker() {
 693   $.ajax({
 694     data:{csrfmiddlewaretoken: '{{ csrf_token }}'},
 695     url: "/refresh_done1/{{task.id}}/",
 696     type:"post",
 697     success: function(data) {
 698       document.location.reload();
 699     },
 700     complete: function() {
 701       // Schedule the next request when the current one's complete
 702       setTimeout(worker, 30000);
 703     }
 704   });
 705 };
 706 $(document).ready(function() {
 707   // run the first time; all subsequent calls will take care of themselves
 708   setTimeout(worker, 30000);
 709 });
 710 </script>
 711 {% endif %}
 712
 713 <script src="https://unpkg.com/ngl"></script>
 714 {% if task.type == "min" %}
 715 <script>
 716 window.addEventListener("resize",
 717      function (event) {
 718      stage.handleResize();
 719      },false);
 720
 721 var stage = new NGL.Stage("viewport_min");
 722 stage.setParameters( { backgroundColor: "white" } );
 723 Promise.all([
 724   stage.loadFile( "/myfiles/download-file/{{task.jobdirname}}/file_GB000.pdb" ,{defaultRepresentation: false}) .then( function( o ){
 725      o.addRepresentation( "backbone",{ color:
 726        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
 727      })
 728      o.addRepresentation( "licorice",{ color:
 729        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange","red"]
 730      })
 731      return o
 732   }),
 733
 734   stage.loadFile("/myfiles/download-file/{{task.jobdirname}}/plik.pdb",{defaultRepresentation: false}) .then( function( o ){
 735      o.addRepresentation( "backbone",{ name: "allatom", color:
 736        "residueindex",colorScale:["blue","cyan", "green","yellow","orange", "red"]
 737      })
 738      o.addRepresentation( "line",{ name: "allatomsc", color:
 739        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
 740        ,sele:"not hydrogen and sidechainAttached"
 741      })
 742      return o
 743   })
 744 ]).then(function (ol) {
 745    ol[ 0 ].superpose(ol[ 1 ], false, ".CA")
 746    ol[ 0 ].autoView()
 747 })
 748
 749 var allatom=true;
 750 var side=true;
 751 var toggleAll = document.getElementById( "toggleAllatom" );
 752 toggleAll.addEventListener( "click", function(){
 753                         allatom=! allatom;
 754                         stage.getRepresentationsByName(
 755                                 "allatom" ).list.forEach( function( repre ){
 756                                 repre.setVisibility( !repre.visible );
 757                         } );
 758             if (side) {
 759                         stage.getRepresentationsByName(
 760                                 "allatomsc" ).list.forEach( function( repre ){
 761                                 repre.setVisibility( !repre.visible );
 762                         } );
 763             }
 764 } );
 765 var toggleSidechains = document.getElementById("toggleSidechains2" );
 766 toggleSidechains.addEventListener( "click", function(){
 767           side=!side;
 768           if (allatom) {
 769                 stage.getRepresentationsByName(
 770                         "allatomsc" ).list.forEach( function( repre ){
 771                                 repre.setVisibility( !repre.visible );
 772                 } );
 773
 774           }
 775           stage.getRepresentationsByName("licorice").list.forEach( function( repre ){
 776                 repre.setVisibility( !repre.visible );
 777           } );
 778
 779 } );
 780 </script>
 781 {% endif %}
 782
 783 {% if task.type == "md" and task.md_start == "pdbstart" %}
 784 <script>
 785 window.addEventListener("resize",
 786      function (event) {
 787      stage.handleResize();
 788      },false);
 789
 790 var stage = new NGL.Stage("viewport_putty");
 791 stage.setParameters( { backgroundColor: "white" } );
 792
 793 var tooltip = document.createElement("div")
 794 Object.assign(tooltip.style, {
 795   display: "none",
 796   position: "fixed",
 797   zIndex: 10,
 798   pointerEvents: "none",
 799   backgroundColor: "rgba( 0, 0, 0, 0.6 )",
 800   color: "lightgrey",
 801   padding: "8px",
 802   fontFamily: "sans-serif"
 803 })
 804 document.body.appendChild(tooltip)
 805
 806 stage.loadFile("/myfiles/download-file/{{task.jobdirname}}/plik_bf.pdb", {defaultRepresentation: false}).then
 807        (function ( o ){
 808        o.addRepresentation("tube",{ color: "bfactor" , scale: 0.25,
 809        sele: "backbone",
 810        radius:"bfactor",
 811        colorScale:["blue","cyan", "green", "yellow","orange", "red"] });
 812        o.addRepresentation("licorice",{sele:"sidechainAttached and CYS and not hydrogen"});
 813        o.autoView();
 814 })
 815
 816 // remove default hoverPick mouse action
 817 stage.mouseControls.remove("hoverPick")
 818
 819 stage.signals.hovered.add(function (pickingProxy) {
 820   if (pickingProxy && (pickingProxy.atom || pickingProxy.bond)) {
 821     var atom = pickingProxy.atom || pickingProxy.closestBondAtom
 822     var mp = pickingProxy.mouse.position
 823     var bf= atom.bfactor.toFixed(2)
 824     tooltip.innerText = atom.qualifiedName()+" Fluctuation="+ bf
 825     tooltip.style.bottom = window.innerHeight - mp.y + 3 + "px"
 826     tooltip.style.left = mp.x + 3 + "px"
 827     tooltip.style.display = "block"
 828   } else {
 829     tooltip.style.display = "none"
 830   }
 831 })
 832 </script>
 833 {% endif %}
 834
 835 {% if task.type == "md" and task.md_mdpdb %}
 836 <script>
 837 window.addEventListener("resize",
 838      function (event) {
 839      stage.handleResize();
 840      },false);
 841
 842       var stage = new NGL.Stage("viewport_traj");
 843       stage.setParameters( { backgroundColor: "white" } );
 844       stage.setParameters( { cameraType: "orthographic" } );
 845       var traj;
 846       var player;
 847       stage.loadFile( "/myfiles/download-file/{{task.jobdirname}}/file_MD000.pdb", {
 848        asTrajectory: true } ) .then( function( o ){
 849         o.setName ("unres_md");
 850         o.addRepresentation( "backbone",{ color:
 851        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
 852         });
 853         o.addRepresentation( "licorice",{ color:
 854        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
 855         });
 856         o.autoView();
 857         o.addTrajectory();
 858       });
 859
 860             var toggleSidechains = document.getElementById( "toggleSidechains1" );
 861             toggleSidechains.addEventListener( "click", function(){
 862                                                         stage.getRepresentationsByName( "licorice" ).list.forEach( function( repre ){
 863                                                                         repre.setVisibility( !repre.visible );
 864                                                         } );
 865             } );
 866
 867
 868       function numberWithCommas(x) {
 869                 return x.toString().replace(/\B(?=(\d{3})+(?!\d))/g, ",");
 870       }
 871       var toggleRunMDs = document.getElementById( "toggleRunMDs" );
 872       var isRunning = false;
 873       toggleRunMDs.addEventListener( "click", function(){
 874          var trajComp = stage.getComponentsByName("unres_md").list[0].trajList[0];
 875          var player = new NGL.TrajectoryPlayer(trajComp.trajectory, {timeout: 10, mode: "once"});
 876                                 if( !isRunning ){
 877                                         player.play();
 878                                         isRunning = true;
 879
 880                     trajComp.signals.frameChanged.add(function(){
 881                       var fnum=trajComp.trajectory.currentFrame;
 882                       clipRange.value = fnum;
 883                       clipRange_val.innerHTML = numberWithCommas(parseInt(clipRange.value*1));
 884                     });
 885
 886                                 }else{
 887                                         player.play();
 888                                         player.pause();
 889                                         isRunning = false;
 890                                 }
 891       } );
 892       var clipRange = document.getElementById( "clipRange" );
 893       var clipRange_val = document.getElementById( "clipRange_val" );
 894       clipRange.oninput = function( e ){
 895                 var trajComp = stage.getComponentsByName("unres_md").list[0].trajList[0];
 896                 trajComp.setFrame(e.target.value)
 897                 clipRange_val.innerHTML = numberWithCommas(parseInt(e.target.value*1));
 898       };
 899
 900 </script>
 901 {% endif %}
 902
 903
 904 {% endblock %}