django_simple/todo/templates/details.html

   1 {% extends "base.html" %}
   2
   3 {% load i18n lazysignup_tags %}
   4 {% block content %}
   5
   6 {% if user|is_lazy_user %}
   7 <ul class="list-group">
   8
   9 <li class="list-group-item new-task-item task-item">
  10
  11 <div class="col-md-2 form-group">
  12 <form action="/refresh_done/" method="post">
  13 {% csrf_token %}
  14 <input type="submit" class="btn" value="Refresh" name="refreshbtn">
  15 </form>
  16 </div>
  17
  18 <div class="col-md-10 form-group">
  19 <h5 style="text-align:right;float:right;">
  20 {% if not task.done %}
  21  {% if task.running > 0  %}
  22   {% if task.running == 100  %}
  23   postprocessing
  24   {% else %}
  25   running
  26   {% endif %}
  27  {% else %}
  28   waiting in the queue to start
  29  {% endif %}
  30 {% endif %}
  31 </h5>
  32 </div>
  33 </li>
  34 </ul>
  35 {% endif %}
  36
  37 <h3> Task <b>{{ task.name }}</b></h3>
  38 Created {{ task.created_date  }}
  39         <ul class="list-group">
  40
  41                         <li class="list-group-item task-item">
  42                                 <div class="col-md-4"> done ?</div>
  43                                 <div class="col-md-8">
  44                                         {% if task.done %}
  45                                                 <span class="fa fa-check-square-o"></span>
  46                                             {% if task.type == "md" or task.type == "remd" %}
  47                                               <form action="restart/"
  48                                                 method="get"
  49                                                 style="text-align;float:right;">
  50                                                 {% csrf_token %}
  51                                                  <input type="submit"
  52                                                  class="btn btn-default"
  53                                                  value="Restart"
  54                                                  name="restartbtn">
  55                                                  </button>
  56                                               </form>
  57                                             {% endif %}
  58                                         {% else %}
  59                                           {% if task.running > 0  %}
  60                                                 <span class="fa fa-spinner
  61                                                 fa-spin"></span>
  62                                                 {{ task.running }}%
  63                                               {% if task.running == 100  %}
  64                                               postprocessing
  65                                               {% endif %}
  66                                           {% else %}
  67                                                 <span class="fa fa-square-o"></span>
  68                                           {% endif %}
  69                                         {% endif %}
  70
  71                                 </div>
  72                         </li>
  73 <div>
  74     <fieldset class="majorpoints">
  75     <legend class="majorpointslegend"
  76     style="background-color:#d3d3d3;cursor: pointer;">Show input parameters</legend>
  77     <div class="hiders" style="display:none" >
  78
  79                         <li class="list-group-item task-item">
  80                             <div class="col-md-6"> type </div>
  81                             <div class="col-md-6">{{ task.type }}</div>
  82                         </li>
  83
  84                         <li class="list-group-item task-item">
  85                             <div class="col-md-6"> force field </div>
  86                             <div class="col-md-6">{{ task.unres_ff }}</div>
  87                         </li>
  88
  89                         <li class="list-group-item task-item">
  90                             <div class="col-md-4"> sequence </div>
  91                             <div class="col-md-8 monospace">{{ task.md_seq}}</div>
  92                         </li>
  93
  94                         <li class="list-group-item task-item">
  95                             <div class="col-md-4"> secondary structure
  96                             restraints </div>
  97                             <div class="col-md-8 monospace">{{ task.md_2d}}</div>
  98                         </li>
  99
 100
 101                         <li class="list-group-item task-item">
 102                             <div class="col-md-6"> SSBOND </div>
 103                             <div class="col-md-6">{{ task.ssbond}}</div>
 104                         </li>
 105
 106
 107         {% if task.type == "min" %}
 108
 109
 110                         <li class="list-group-item task-item">
 111                             <div class="col-md-6"> algorithm</div>
 112                             <div class="col-md-6">{{ task.min_choice }}</div>
 113                         </li>
 114                         <li class="list-group-item task-item">
 115                             <div class="col-md-6"> overlap</div>
 116                             <div class="col-md-6">{{ task.min_overlap }}</div>
 117                         </li>
 118                         <li class="list-group-item task-item">
 119                             <div class="col-md-6"> searchsc</div>
 120                             <div class="col-md-6">{{ task.min_searchsc }}</div>
 121                         </li>
 122                         <li class="list-group-item task-item">
 123                             <div class="col-md-6"> maxmin</div>
 124                             <div class="col-md-6">{{ task.min_maxmin }}</div>
 125                         </li>
 126                         <li class="list-group-item task-item">
 127                             <div class="col-md-6"> maxfun</div>
 128                             <div class="col-md-6">{{ task.min_maxfun }}</div>
 129                         </li>
 130                         <li class="list-group-item task-item">
 131                             <div class="col-md-6"> pdbout</div>
 132                             <div class="col-md-6">{{ task.min_pdbout }}</div>
 133                         </li>
 134                         <li class="list-group-item task-item">
 135                             <div class="col-md-6"> input pdb </div>
 136                             <div class="col-md-6">{{ task.myfile1 }}</div>
 137                         </li>
 138                         <li class="list-group-item task-item">
 139                             <div class="col-md-6"> pdb code</div>
 140                             <div class="col-md-6">{{ task.pdbcode }}</div>
 141                         </li>
 142                         <li class="list-group-item task-item">
 143                             <div class="col-md-6"> unres_pdb</div>
 144                             <div class="col-md-6">{{ task.min_unres_pdb }}</div>
 145                         </li>
 146
 147         {% endif %}
 148         {% if task.type == "md" %}
 149                         <li class="list-group-item task-item">
 150                             <div class="col-md-6"> starting </div>
 151                             <div class="col-md-6">{{ task.md_start}}</div>
 152                         </li>
 153
 154                         <li class="list-group-item task-item">
 155                             <div class="col-md-6"> input pdb </div>
 156                             <div class="col-md-6">{{ task.myfile1 }}</div>
 157                         </li>
 158                         <li class="list-group-item task-item">
 159                             <div class="col-md-6"> pdb code</div>
 160                             <div class="col-md-6">{{ task.pdbcode }}</div>
 161                         </li>
 162                         <li class="list-group-item task-item">
 163                             <div class="col-md-6"> seed </div>
 164                             <div class="col-md-6">{{ task.md_seed}}</div>
 165                         </li>
 166                         <li class="list-group-item task-item">
 167                             <div class="col-md-6"> pdbref </div>
 168                             <div class="col-md-6">{{ task.md_pdbref}}</div>
 169                         </li>
 170                         <li class="list-group-item task-item">
 171                             <div class="col-md-6"> respa </div>
 172                             <div class="col-md-6">{{ task.md_respa}}</div>
 173                         </li>
 174                         <li class="list-group-item task-item">
 175                             <div class="col-md-6"> temperature </div>
 176                             <div class="col-md-6">{{ task.md_temp}}</div>
 177                         </li>
 178                         <li class="list-group-item task-item">
 179                             <div class="col-md-6"> nstep </div>
 180                             <div class="col-md-6">{{ task.md_nstep}}</div>
 181                         </li>
 182                         <li class="list-group-item task-item">
 183                             <div class="col-md-6"> total steps (with restarts) </div>
 184                             <div class="col-md-6">{{ task.md_total_steps}}</div>
 185                         </li>
 186                         <li class="list-group-item task-item">
 187                             <div class="col-md-6"> ntwe </div>
 188                             <div class="col-md-6">{{ task.md_ntwe}}</div>
 189                         </li>
 190                         <li class="list-group-item task-item">
 191                             <div class="col-md-6"> ntwx </div>
 192                             <div class="col-md-6">{{ task.md_ntwx}}</div>
 193                         </li>
 194                         <li class="list-group-item task-item">
 195                             <div class="col-md-6"> dt </div>
 196                             <div class="col-md-6">{{ task.md_dt}}</div>
 197                         </li>
 198                         <li class="list-group-item task-item">
 199                             <div class="col-md-6"> thermostat </div>
 200                             <div class="col-md-6">{{ task.md_lang}}</div>
 201                         </li>
 202
 203                         {% if task.md_lang == "berendsen" %}
 204
 205                         <li class="list-group-item task-item">
 206                             <div class="col-md-6"> tau </div>
 207                             <div class="col-md-6">{{ task.md_tau}}</div>
 208                         </li>
 209
 210                         {% else %}
 211
 212                         <li class="list-group-item task-item">
 213                             <div class="col-md-6"> scal_fric </div>
 214                             <div class="col-md-6">{{ task.md_scal_fric}}</div>
 215                         </li>
 216
 217                         {% endif %}
 218
 219                         <li class="list-group-item task-item">
 220                             <div class="col-md-6"> mdpdb </div>
 221                             <div class="col-md-6">{{ task.md_mdpdb}}</div>
 222                         </li>
 223                         <li class="list-group-item task-item">
 224                             <div class="col-md-6"> RESPA </div>
 225                             <div class="col-md-6">{{ task.md_respa}}</div>
 226                         </li>
 227
 228
 229         {% endif %}
 230
 231         {% if task.type == "remd" or task.type == "dock" %}
 232
 233                         <li class="list-group-item task-item">
 234                             <div class="col-md-6"> nrep </div>
 235                             <div class="col-md-6">{{ task.remd_nrep}}</div>
 236                         </li>
 237                         <li class="list-group-item task-item">
 238                             <div class="col-md-6"> starting </div>
 239                             <div class="col-md-6">{{ task.md_start}}</div>
 240                         </li>
 241
 242                         <li class="list-group-item task-item">
 243                             <div class="col-md-6"> input pdb </div>
 244                             <div class="col-md-6">{{ task.myfile1 }}</div>
 245                         </li>
 246                         <li class="list-group-item task-item">
 247                             <div class="col-md-6"> pdb code</div>
 248                             <div class="col-md-6">{{ task.pdbcode }}</div>
 249                         </li>
 250                         {% if task.type == "dock" %}
 251                         <li class="list-group-item task-item">
 252                             <div class="col-md-6"> input pdb2 </div>
 253                             <div class="col-md-6">{{ task.myfile2 }}</div>
 254                         </li>
 255                         <li class="list-group-item task-item">
 256                             <div class="col-md-6"> pdb code2</div>
 257                             <div class="col-md-6">{{ task.pdbcode2 }}</div>
 258                         </li>
 259                         <li class="list-group-item task-item">
 260                             <div class="col-md-6"> dock_peptide</div>
 261                             <div class="col-md-6">{{ task.dock_peptide }}</div>
 262                         </li>
 263
 264                         {% endif %}
 265                         <li class="list-group-item task-item">
 266                             <div class="col-md-6"> seed </div>
 267                             <div class="col-md-6">{{ task.md_seed}}</div>
 268                         </li>
 269                         <li class="list-group-item task-item">
 270                             <div class="col-md-6"> pdbref </div>
 271                             <div class="col-md-6">{{ task.md_pdbref}}</div>
 272                         </li>
 273                         {% if task.md_start == "pdbstart" %}
 274                         <li class="list-group-item task-item">
 275                             <div class="col-md-6"> preminim maxfun </div>
 276                             <div class="col-md-6">{{ task.min_maxfun }}</div>
 277                         </li>
 278                         {% endif %}
 279                         <li class="list-group-item task-item">
 280                             <div class="col-md-6"> respa </div>
 281                             <div class="col-md-6">{{ task.md_respa}}</div>
 282                         </li>
 283                         <li class="list-group-item task-item">
 284                             <div class="col-md-6"> nstep </div>
 285                             <div class="col-md-6">{{ task.md_nstep}}</div>
 286                         </li>
 287                         <li class="list-group-item task-item">
 288                             <div class="col-md-6"> total steps (with restarts) </div>
 289                             <div class="col-md-6">{{ task.md_total_steps}}</div>
 290                         </li>
 291                         <li class="list-group-item task-item">
 292                             <div class="col-md-6"> ntwe </div>
 293                             <div class="col-md-6">{{ task.md_ntwe}}</div>
 294                         </li>
 295                         <li class="list-group-item task-item">
 296                             <div class="col-md-6"> nstex </div>
 297                             <div class="col-md-6">{{ task.remd_nstex}}</div>
 298                         </li>
 299                         <li class="list-group-item task-item">
 300                             <div class="col-md-6"> ntwx </div>
 301                             <div class="col-md-6">{{ task.md_ntwx}}</div>
 302                         </li>
 303                         <li class="list-group-item task-item">
 304                             <div class="col-md-6"> dt </div>
 305                             <div class="col-md-6">{{ task.md_dt}}</div>
 306                         </li>
 307                         <li class="list-group-item task-item">
 308                             <div class="col-md-6"> thermostat </div>
 309                             <div class="col-md-6">{{ task.md_lang}}</div>
 310                         </li>
 311
 312                         {% if task.md_lang == "berendsen" %}
 313
 314                         <li class="list-group-item task-item">
 315                             <div class="col-md-6"> tau </div>
 316                             <div class="col-md-6">{{ task.md_tau}}</div>
 317                         </li>
 318
 319                         {% else %}
 320
 321                         <li class="list-group-item task-item">
 322                             <div class="col-md-6"> scal_fric </div>
 323                             <div class="col-md-6">{{ task.md_scal_fric}}</div>
 324                         </li>
 325
 326                         {% endif %}
 327
 328                         <li class="list-group-item task-item">
 329                             <div class="col-md-6"> RESPA </div>
 330                             <div class="col-md-6">{{ task.md_respa}}</div>
 331                         </li>
 332
 333                         <li class="list-group-item task-item">
 334                             <div class="col-md-6"> temperatures </div>
 335                             <div class="col-md-6">{{ task.remd_multi_t}}</div>
 336                         </li>
 337                         <li class="list-group-item task-item">
 338                             <div class="col-md-6"> multiplex </div>
 339                             <div class="col-md-6">{{ task.remd_multi_m}}</div>
 340                         </li>
 341                         <li class="list-group-item task-item">
 342                             <div class="col-md-6"> temperature for clustering</div>
 343                             <div class="col-md-6">{{ task.remd_cluter_temp}}</div>
 344                         </li>
 345                         {% if task.saxs_data != "" %}
 346                         <li class="list-group-item task-item">
 347                             <div class="col-md-6"> wsaxs </div>
 348                             <div class="col-md-6">{{ task.wsaxs }}</div>
 349                         </li>
 350                         <li class="list-group-item task-item">
 351                             <div class="col-md-6"> scal_rad (saxs) </div>
 352                             <div class="col-md-6">{{ task.scal_rad }}</div>
 353                         </li>
 354                         <li class="list-group-item task-item">
 355                             <div class="col-md-6"> saxs distribution </div>
 356                             <div class="col-md-6"><pre> {{ task.saxs_data }}</pre></div>
 357                         </li>
 358                         {% endif %}
 359
 360         {% endif %}
 361
 362                         <li class="list-group-item task-item">
 363                             <div class="col-md-6"> Box X Y Z</div>
 364                             <div class="col-md-2">{{ task.boxx}}</div>
 365                             <div class="col-md-2">{{ task.boxy}}</div>
 366                             <div class="col-md-2">{{ task.boxz}}</div>
 367                         </li>
 368
 369 </div>
 370 </div>
 371         <p>
 372         <h3> Results </h3>
 373                         <li class="list-group-item task-item">
 374                             <div class="col-md-4"> Directory </div>
 375                             <div class="col-md-8">
 376                             <a href="/myfiles/list/{{task.jobdirname}}/">
 377                             {{ task.jobdirname }}
 378                             </a>
 379                             {% if task.done %}
 380                             &nbsp;
 381                             <a class="btn btn-default"
 382                             href="/{{task.id}}/all.zip">
 383                             Download as zip</a>
 384                             {% endif %}
 385                             </div>
 386                         </li>
 387
 388
 389         {% if task.done %}
 390
 391                         {% if task.type == "min" %}
 392
 393                         <li class="list-group-item task-item">
 394                             <div class="col-md-2"> Etot </div>
 395                             <div class="col-md-10">{{ task.etot }}</div>
 396                         </li>
 397 <!--
 398                         <li class="list-group-item task-item">
 399                           <div class="col-md-2"> UNRES model </div>
 400                           <div class="col-md-10">
 401                           <a
 402                            href="/myfiles/download-file/{{task.jobdirname}}/unres.pse">
 403                           <img
 404                           src="/myfiles/download-file/{{task.jobdirname}}/unres.png"
 405                           width="500"></a> </div>
 406                         </li>
 407 -->
 408                         <li class="list-group-item task-item">
 409                           <div class="col-md-2"> UNRES model NGL viewer</div>
 410                           <div class="col-md-10" id="viewport_unres"
 411                           style="width:500px;height:500px;">
 412                           </div>
 413                         </li>
 414
 415
 416 <!--
 417                         <li class="list-group-item task-item">
 418                           <div class="col-md-2"> Structure overlap </div>
 419                           <div class="col-md-10"> <img
 420                           src="/myfiles/download-file/{{task.jobdirname}}/unres_overlap.png"
 421                           width="500"> </div>
 422                         </li>
 423 -->
 424                         <li class="list-group-item task-item">
 425                           <div class="col-md-2"> Structure overlap NGL viewer</div>
 426                           <div class="col-md-10" id="viewport_min"
 427                           style="width:500px;height:500px;">
 428                           </div>
 429                         </li>
 430                         <li class="list-group-item task-item">
 431                <div class="col-md-12">
 432                <button id="toggleAllatom">Input structure on/off</button>
 433                <button id="toggleSidechains2">Side-chains on/off</button>
 434                </div>
 435                         </li>
 436                         {% endif %}
 437
 438                         <li class="list-group-item task-item">
 439                             <div class="col-md-2"> Results </div>
 440                             <div class="col-md-10">{{ task.results_text|linebreaks }}</div>
 441                         </li>
 442
 443                         {% if task.type == "md" %}
 444
 445                         <li class="list-group-item task-item">
 446                           <div class="col-md-2"> Temperature histogram </div>
 447                           <div class="col-md-10"> <img
 448                           src="/myfiles/download-file/{{task.jobdirname}}/temp_hist.png"
 449                           width="500"> </div>
 450                         </li>
 451
 452                         <li class="list-group-item task-item">
 453                           <div class="col-md-2"> Potential energy </div>
 454                           <div class="col-md-10"> <img
 455                           src="/myfiles/download-file/{{task.jobdirname}}/md_ene.png"
 456                           width="500"> </div>
 457                         </li>
 458
 459                             <li class="list-group-item task-item">
 460                             <div class="col-md-2"> Movie </div>
 461                             <div class="col-md-10">
 462
 463                             <video width="500" height="400"
 464                             preload="auto" controls="controls">
 465                             <source
 466                             src="/myfiles/download-file/{{task.jobdirname}}/md.ogv"
 467                             type="video/ogg; codecs=theora"> </source>
 468                             </video>
 469
 470                             </div>
 471                             </li>
 472
 473 {% if task.md_mdpdb %}
 474                         <li class="list-group-item task-item">
 475                           <div class="col-md-2"> Trajectory NGL viewer</div>
 476                           <div class="col-md-10" id="viewport_traj"
 477                           style="width:500px;height:500px;">
 478                           </div>
 479                         </li>
 480                         <li class="list-group-item task-item">
 481                <div class="col-md-6">
 482 <input id="clipRange" type="range" value=1 min=1 max= {% widthratio task.md_total_steps task.md_ntwx 1 %} step=1 ></input><span id="clipRange_val">1</span> frame
 483 </div>
 484 <div class="col-md-6">
 485 <button id="toggleRunMDs">run/pause MD</button>
 486 <button id="toggleSidechains1">side-chains on/off</button>
 487 </div>
 488                         </li>
 489
 490 {% endif %}
 491
 492                         <li class="list-group-item task-item">
 493                           <div class="col-md-2"> Radius of gyration based
 494                           on C<sup>α</sup> coordinates </div>
 495                           <div class="col-md-10"> <img
 496                           src="/myfiles/download-file/{{task.jobdirname}}/md_gyr.png"
 497                           width="500"> </div>
 498                         </li>
 499
 500
 501
 502                            {% if task.md_pdbref %}
 503                         <li class="list-group-item task-item">
 504                           <div class="col-md-2"> C<sup>&alpha;</sup> RMSD </div>
 505                           <div class="col-md-10"> <img
 506                           src="/myfiles/download-file/{{task.jobdirname}}/md_rms.png"
 507                           width="500"> </div>
 508                         </li>
 509
 510                         <li class="list-group-item task-item">
 511                           <div class="col-md-2"> fraction of native
 512                           side-chain concacts </div>
 513                           <div class="col-md-10"> <img
 514                           src="/myfiles/download-file/{{task.jobdirname}}/md_fracn.png"
 515                           width="500"> </div>
 516                         </li>
 517
 518                            {% endif %}
 519
 520                            {% if task.md_start == "pdbstart" %}
 521                         <li class="list-group-item task-item">
 522                           <div class="col-md-2"> fluctuations </div>
 523                           <div class="col-md-10"> <img
 524                           src="/myfiles/download-file/{{task.jobdirname}}/fluct_plot.png"
 525                           width="500"> </div>
 526                         </li>
 527 <!--
 528                         <li class="list-group-item task-item">
 529                           <div class="col-md-2"> fluctuations putty on
 530                           starting structure</div>
 531                           <div class="col-md-10">
 532                           <a
 533                           href="/myfiles/download-file/{{task.jobdirname}}/fluct.pse">
 534                           <img
 535                           src="/myfiles/download-file/{{task.jobdirname}}/fluct.png"
 536                           width="500"></a> </div>
 537                         </li>
 538 -->
 539                         <li class="list-group-item task-item">
 540                           <div class="col-md-2"> fluctuations putty on
 541                           starting structure NGL viewer</div>
 542                           <div class="col-md-10" id="viewport_putty"
 543                           style="width:500px;height:500px;">
 544                           </div>
 545                         </li>
 546
 547
 548                            {% endif %}
 549
 550
 551
 552                         {% endif %}
 553
 554                         {% if task.type == "remd" or task.type == "dock" %}
 555
 556                         <li class="list-group-item task-item">
 557                           <div class="col-md-2"> Energy histogram </div>
 558                           <div class="col-md-10"> <img
 559                           src="/myfiles/download-file/{{task.jobdirname}}/remd_ene_hist.png"
 560                           width="500"> </div>
 561                         </li>
 562
 563                         <li class="list-group-item task-item">
 564                           <div class="col-md-2"> Energy vs. temperature </div>
 565                           <div class="col-md-10"> <img
 566                           src="/myfiles/download-file/{{task.jobdirname}}/remd_Tene.png"
 567                           width="500"> </div>
 568                         </li>
 569
 570                         <li class="list-group-item task-item">
 571                           <div class="col-md-2"> Cv vs. temperature </div>
 572                           <div class="col-md-10"> <img
 573                           src="/myfiles/download-file/{{task.jobdirname}}/remd_cv.png"
 574                           width="500"> </div>
 575                         </li>
 576
 577                            {% if task.md_pdbref %}
 578
 579                         <li class="list-group-item task-item">
 580                           <div class="col-md-2"> Average C<sup>&alpha;</sup> RMSD vs. temperature </div>
 581                           <div class="col-md-10"> <img
 582                           src="/myfiles/download-file/{{task.jobdirname}}/remd_rmsd.png"
 583                           width="500"> </div>
 584                         </li>
 585
 586                         <li class="list-group-item task-item">
 587                           <div class="col-md-2"> potential energy vs.
 588                           C<sup>&alpha;</sup> RMSD</div>
 589                           <div class="col-md-10"> <img
 590                           src="/myfiles/download-file/{{task.jobdirname}}/remd_ene_rms.png"
 591                           width="500"> </div>
 592                         </li>
 593
 594                         <li class="list-group-item task-item">
 595                           <div class="col-md-2"> C<sup>&alpha;</sup> RMSD vs. step*replica
 596                           colored by bath temperature</div>
 597                           <div class="col-md-10"> <img
 598                           src="/myfiles/download-file/{{task.jobdirname}}/remd_step_rms.png"
 599                           width="500"> </div>
 600                         </li>
 601
 602
 603                            {% endif %}
 604
 605                         <li class="list-group-item task-item">
 606                           <div class="col-md-2"> exchanges (walk in T) </div>
 607                           <div class="col-md-10"> <img
 608                           src="/myfiles/download-file/{{task.jobdirname}}/remd_ex.png"
 609                           width="500"> </div>
 610                         </li>
 611
 612                            {% if task.saxs_data != "" %}
 613                         <li class="list-group-item task-item">
 614                           <div class="col-md-2"> P(r) of input SAXS data and
 615                           calculated for 5 models and the input pdb</div>
 616                           <div class="col-md-10"> <img
 617                           src="/myfiles/download-file/{{task.jobdirname}}/saxs.png"
 618                           width="500"> </div>
 619                         </li>
 620                            {% endif %}
 621
 622         <li class="list-group-item task-item">
 623         <div class="col-md-4">
 624         <button onclick="plusDivs(-1)">&#10094;</button>
 625         </div>
 626         <div class="col-md-6">
 627         select model
 628         </div>
 629         <div class="col-md-2">
 630         <button onclick="plusDivs(1)">&#10095;</button>
 631         </div>
 632         </li>
 633
 634                         <div class="model">
 635 <!--                    <li class="list-group-item task-item">
 636                           <div class="col-md-2"> model1 after conversion
 637                           to allatom
 638                           {{ task.remd_model1|linebreaks }}
 639                           </div>
 640                           <div class="col-md-10">
 641                           <a
 642                           href="/myfiles/download-file/{{task.jobdirname}}/MODEL1.pdb">
 643                           <img
 644                           src="/myfiles/download-file/{{task.jobdirname}}/model1.png" width="500">
 645                           </a></div>
 646                         </li> -->
 647                         <li class="list-group-item task-item">
 648                           <div class="col-md-2"> model1
 649                           {% if not task.damino %}
 650                           after conversion to allatom
 651                           {% endif %}
 652                           {{ task.remd_model1|linebreaks }}
 653                           NGL viewer</div>
 654                           <div class="col-md-10" id="viewport_M1"
 655                           style="width:500px;height:500px;">
 656                           </div>
 657                         </li>
 658                         <li class="list-group-item task-item">
 659                <div class="col-md-12">
 660                {% if task.md_pdbref %}
 661                <button id="toggleRefM1">Reference structure on/off</button>
 662                {% endif %}
 663                <button id="toggleSidechainsM1">Side-chains on/off</button>
 664                <a class="btn btn-default"
 665                href="/myfiles/download-file/{{task.jobdirname}}/MODEL1.pdb">Download</a>
 666                </div>
 667                         </li>
 668
 669                         </div>
 670                         <div class="model">
 671 <!--                    <li class="list-group-item task-item">
 672                           <div class="col-md-2"> model2 after conversion
 673                           to allatom
 674                           {{ task.remd_model2|linebreaks }}
 675                           </div>
 676                           <div class="col-md-10">
 677                           <a
 678                           href="/myfiles/download-file/{{task.jobdirname}}/MODEL2.pdb">
 679                           <img
 680                           src="/myfiles/download-file/{{task.jobdirname}}/model2.png" width="500">
 681                           </a></div>
 682                         </li> -->
 683                         <li class="list-group-item task-item">
 684                           <div class="col-md-2"> model2
 685                           {% if not task.damino %}
 686                           after conversion to allatom
 687                           {% endif %}
 688                           {{ task.remd_model2|linebreaks }}
 689                           NGL viewer</div>
 690                           <div class="col-md-10" id="viewport_M2"
 691                           style="width:500px;height:500px;">
 692                           </div>
 693                         </li>
 694                         <li class="list-group-item task-item">
 695                <div class="col-md-12">
 696                {% if task.md_pdbref %}
 697                <button id="toggleRefM2">Reference structure on/off</button>
 698                {% endif %}
 699                <button id="toggleSidechainsM2">Side-chains on/off</button>
 700                <a class="btn btn-default"
 701                href="/myfiles/download-file/{{task.jobdirname}}/MODEL2.pdb">Download</a>
 702                </div>
 703                         </li>
 704
 705
 706                         </div>
 707                         <div class="model">
 708 <!--                    <li class="list-group-item task-item">
 709                           <div class="col-md-2"> model3 after conversion
 710                           to allatom
 711                           {{ task.remd_model3|linebreaks }}
 712                           </div>
 713                           <div class="col-md-10">
 714                           <a
 715                           href="/myfiles/download-file/{{task.jobdirname}}/MODEL3.pdb">
 716                           <img
 717                           src="/myfiles/download-file/{{task.jobdirname}}/model3.png" width="500">
 718                           </a></div>
 719                         </li>-->
 720                         <li class="list-group-item task-item">
 721                           <div class="col-md-2"> model3
 722                           {% if not task.damino %}
 723                           after conversion to allatom
 724                           {% endif %}
 725                           {{ task.remd_model3|linebreaks }}
 726                           NGL viewer</div>
 727                           <div class="col-md-10" id="viewport_M3"
 728                           style="width:500px;height:500px;">
 729                           </div>
 730                         </li>
 731                         <li class="list-group-item task-item">
 732                <div class="col-md-12">
 733                {% if task.md_pdbref %}
 734                <button id="toggleRefM3">Reference structure on/off</button>
 735                {% endif %}
 736                <button id="toggleSidechainsM3">Side-chains on/off</button>
 737                <a class="btn btn-default"
 738                href="/myfiles/download-file/{{task.jobdirname}}/MODEL3.pdb">Download</a>
 739                </div>
 740                         </li>
 741
 742                         </div>
 743                         <div class="model">
 744 <!--                    <li class="list-group-item task-item">
 745                           <div class="col-md-2"> model4 after conversion
 746                           to allatom
 747                           {{ task.remd_model4|linebreaks }}
 748                           </div>
 749                           <div class="col-md-10">
 750                           <a
 751                           href="/myfiles/download-file/{{task.jobdirname}}/MODEL4.pdb">
 752                           <img
 753                           src="/myfiles/download-file/{{task.jobdirname}}/model4.png" width="500">
 754                           </a></div>
 755                         </li>-->
 756                         <li class="list-group-item task-item">
 757                           <div class="col-md-2"> model4
 758                           {% if not task.damino %}
 759                           after conversion to allatom
 760                           {% endif %}
 761                           {{ task.remd_model4|linebreaks }}
 762                           NGL viewer</div>
 763                           <div class="col-md-10" id="viewport_M4"
 764                           style="width:500px;height:500px;">
 765                           </div>
 766                         </li>
 767                         <li class="list-group-item task-item">
 768                <div class="col-md-12">
 769                {% if task.md_pdbref %}
 770                <button id="toggleRefM4">Reference structure on/off</button>
 771                {% endif %}
 772                <button id="toggleSidechainsM4">Side-chains on/off</button>
 773                <a class="btn btn-default"
 774                href="/myfiles/download-file/{{task.jobdirname}}/MODEL4.pdb">Download</a>
 775                </div>
 776                         </li>
 777
 778                         </div>
 779                         <div class="model">
 780 <!--                    <li class="list-group-item task-item">
 781                           <div class="col-md-2"> model5 after conversion
 782                           to allatom
 783                           {{ task.remd_model5|linebreaks }}
 784                           </div>
 785                           <div class="col-md-10">
 786                           <a
 787                           href="/myfiles/download-file/{{task.jobdirname}}/MODEL5.pdb">
 788                           <img
 789                           src="/myfiles/download-file/{{task.jobdirname}}/model5.png" width="500">
 790                           </a></div>
 791                         </li>-->
 792                         <li class="list-group-item task-item">
 793                           <div class="col-md-2"> model5
 794                           {% if not task.damino %}
 795                           after conversion to allatom
 796                           {% endif %}
 797                           {{ task.remd_model5|linebreaks }}
 798                           NGL viewer</div>
 799                           <div class="col-md-10" id="viewport_M5"
 800                           style="width:500px;height:500px;">
 801                           </div>
 802                         </li>
 803                         <li class="list-group-item task-item">
 804                <div class="col-md-12">
 805                {% if task.md_pdbref %}
 806                <button id="toggleRefM5">Reference structure on/off</button>
 807                {% endif %}
 808                <button id="toggleSidechainsM5">Side-chains on/off</button>
 809                <a class="btn btn-default"
 810                href="/myfiles/download-file/{{task.jobdirname}}/MODEL5.pdb">Download</a>
 811                </div>
 812                         </li>
 813
 814                         </div>
 815                         {% endif %}
 816
 817         {% endif %}
 818
 819         </ul>
 820
 821 <script src="/static/jquery.min.js"></script>
 822 <script src="https://unpkg.com/ngl"></script>
 823
 824 <script>
 825 $('.majorpointslegend').click(function(){
 826     $(this.parentNode).find('.hiders').toggle();
 827     if($(this.parentNode).find('.majorpointslegend').text()=='Show input parameters'){
 828         $(this.parentNode).find('.majorpointslegend').text('Hide input parameters');
 829     }else{
 830         $(this.parentNode).find('.majorpointslegend').text('Show input parameters');
 831     }
 832 });
 833 </script>
 834
 835 {% if task.type == "remd" or task.type == "dock" %}
 836 <script>
 837 function display_model(numstr){
 838
 839 {% if task.md_pdbref %}
 840   var stage = new NGL.Stage("viewport_M"+numstr);
 841   stage.setParameters( { backgroundColor: "white",fogFar: 60, fogNear: 45 } );
 842   Promise.all([
 843       stage.loadFile( "/myfiles/download-file/{{task.jobdirname}}/plik1.pdb" ,{defaultRepresentation: false}) .then( function( o ){
 844         o.addRepresentation( "cartoon",{ name:"ref", color:"grey"
 845         })
 846         o.addRepresentation( "line", {name:"refsc",visible: false,
 847          sele:"not hydrogen and sidechainAttached"
 848         })
 849         return o
 850       }),
 851       stage.loadFile(
 852       "/myfiles/download-file/{{task.jobdirname}}/MODEL"+numstr+".pdb",{defaultRepresentation: false}) .then( function( o ){
 853  {% if task.damino %}
 854         o.addRepresentation( "licorice",{ name: "unres", color:
 855                "residueindex",colorScale:["blue","cyan", "green",
 856                "yellow","orange", "red"], sele:".CA"
 857                        })
 858         o.addRepresentation( "licorice",{ name: "unressc", visible: false, color:
 859        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
 860         , sele:"*" })
 861  {% else %}
 862         o.addRepresentation( "cartoon",{ name: "unres", color:
 863                "residueindex",colorScale:["blue","cyan", "green",
 864                "yellow","orange", "red"]
 865                        })
 866         o.addRepresentation( "line",{ name: "unressc", visible: false, color:
 867        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
 868         , sele:"not hydrogen and sidechainAttached" })
 869  {% endif %}
 870         return o
 871       })
 872   ]).then(function (ol1) {
 873    ol1[ 1 ].superpose(ol1[ 0 ], false, ".CA")
 874    ol1[ 0 ].autoView()
 875   })
 876             var ref=true;
 877             var side=false;
 878             var toggleAll = document.getElementById( "toggleRefM"+numstr );
 879             toggleAll.addEventListener( "click", function(){
 880                         ref=! ref;
 881                         stage.getRepresentationsByName(
 882                                 "ref" ).list.forEach( function( repre ){
 883                                 repre.setVisibility( !repre.visible );
 884                         } );
 885                 if (side) {
 886                         stage.getRepresentationsByName(
 887                                 "refsc" ).list.forEach( function( repre ){
 888                                 repre.setVisibility( !repre.visible );
 889                         } );
 890                 }
 891
 892             } );
 893      var toggleSidechains =document.getElementById("toggleSidechainsM"+numstr );
 894      toggleSidechains.addEventListener( "click", function(){
 895              side=!side;
 896              if (ref) {
 897                  stage.getRepresentationsByName(
 898                         "refsc" ).list.forEach( function( repre ){
 899                         repre.setVisibility( !repre.visible );
 900              } );
 901       }
 902       stage.getRepresentationsByName("unressc").list.forEach( function( repre ){
 903                         repre.setVisibility( !repre.visible );
 904         } );
 905
 906       } );
 907 {% else %}
 908   var stage = new NGL.Stage("viewport_M"+numstr);
 909   stage.setParameters( { backgroundColor: "white",fogFar: 60, fogNear: 45 } );
 910   stage.loadFile( "/myfiles/download-file/{{task.jobdirname}}/MODEL"+numstr+".pdb",{defaultRepresentation: false}) .then( function( o ){
 911  {% if task.damino %}
 912         o.addRepresentation( "licorice",{ name: "unres", color:
 913                "residueindex",colorScale:["blue","cyan", "green",
 914                "yellow","orange", "red"],sele:".CA"
 915                        });
 916         o.addRepresentation( "licorice",{ name: "unressc", visible: false, color:
 917        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
 918         , sele:"*" });
 919  {% else %}
 920         o.addRepresentation( "cartoon",{ name: "unres", color:
 921                "residueindex",colorScale:["blue","cyan", "green",
 922                "yellow","orange", "red"]
 923                        });
 924         o.addRepresentation( "line",{ name: "unressc", visible: false, color:
 925        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
 926         , sele:"not hydrogen and sidechainAttached" });
 927  {% endif %}
 928         o.autoView();
 929   })
 930      var toggleSidechains =document.getElementById("toggleSidechainsM"+numstr );
 931      toggleSidechains.addEventListener( "click", function(){
 932       stage.getRepresentationsByName("unressc").list.forEach( function( repre ){
 933                         repre.setVisibility( !repre.visible );
 934         } );
 935
 936       } );
 937
 938 {% endif %}
 939 }
 940
 941
 942 window.addEventListener("resize",
 943 function (event) {
 944       stage.handleResize();
 945 },false);
 946
 947
 948 display_model("1")
 949
 950
 951 var slideIndex = 1;
 952 var y = document.getElementsByClassName("model");
 953 var lista=[];
 954 var ii;
 955 for (ii = 0; ii < y.length; ii++) {
 956  lista.push(0)
 957 }
 958 lista[0]=1;
 959 showDivs(slideIndex);
 960
 961 function plusDivs(n) {
 962   showDivs(slideIndex += n);
 963 }
 964
 965 function showDivs(n) {
 966   var i;
 967   var x = document.getElementsByClassName("model");
 968   if (n > x.length) {slideIndex = 1}
 969   if (n < 1) {slideIndex = x.length}
 970   for (i = 0; i < x.length; i++) {
 971      x[i].style.display = "none";
 972   }
 973   x[slideIndex-1].style.display = "block";
 974
 975   if (lista[slideIndex-1] == 0 && slideIndex == 2) {
 976     display_model("2")
 977   }
 978
 979   if (lista[slideIndex-1] == 0 && slideIndex == 3) {
 980      display_model("3")
 981   }
 982
 983   if (lista[slideIndex-1] == 0 && slideIndex == 4) {
 984      display_model("4")
 985   }
 986
 987   if (lista[slideIndex-1] == 0 && slideIndex == 5) {
 988      display_model("5")
 989   }
 990
 991
 992   if (lista[slideIndex-1] == 0) {lista[slideIndex-1]=1}
 993 }
 994 </script>
 995 {% endif %}
 996
 997 {% if not task.done %}
 998 <script>
 999 function worker() {
1000   $.ajax({
1001     data:{csrfmiddlewaretoken: '{{ csrf_token }}'},
1002     url: "/refresh_done/",
1003     type:"post",
1004     success: function(data) {
1005       document.location.reload();
1006     },
1007     complete: function() {
1008       // Schedule the next request when the current one's complete
1009       setTimeout(worker, 30000);
1010     }
1011   });
1012 };
1013 $(document).ready(function() {
1014   // run the first time; all subsequent calls will take care of themselves
1015   setTimeout(worker, 30000);
1016 });
1017 </script>
1018 {% endif %}
1019
1020 {% if task.type == "min" %}
1021 <script>
1022 window.addEventListener("resize",
1023      function (event) {
1024      stage.handleResize();
1025      },false);
1026
1027 var stage_unres = new NGL.Stage("viewport_unres");
1028 stage_unres.setParameters( { backgroundColor: "white" } );
1029 /**
1030 [color_Red, color_Green, color_Blue, ellipsoid_width, ellipsoid_length ]
1031 */
1032 var resdb = {   'CYS': [1.000, 1.000, 0.000, 1.33741, 2.96868],
1033                 'MET': [0.000, 1.000, 0.000, 1.36694, 3.08863],
1034                 'PHE': [0.000, 0.392, 0.000, 1.48323, 3.04238],
1035                 'ILE': [0.000, 1.000, 0.000, 1.44098, 3.17389],
1036                 'LEU': [0.000, 1.000, 0.000, 1.51054, 2.52078],
1037                 'VAL': [0.000, 1.000, 0.000, 1.42072, 2.68924],
1038                 'TRP': [0.000, 0.392, 0.000, 1.23867, 3.47403],
1039                 'TYR': [0.596, 0.984, 0.596, 1.23060, 3.35434],
1040                 'ALA': [0.000, 1.000, 0.000, 1.23266, 1.72686],
1041                 'GLY': [1.000, 1.000, 1.000, 1.24626, 1.11383],
1042                 'THR': [1.000, 0.000, 1.000, 1.28674, 2.59210],
1043                 'SER': [1.000, 0.000, 1.000, 1.22820, 1.68800],
1044                 'GLN': [1.000, 0.000, 1.000, 1.24239, 2.22201],
1045                 'ASN': [1.000, 0.000, 1.000, 1.24447, 2.24946],
1046                 'GLU': [1.000, 0.000, 0.000, 1.25448, 2.05551],
1047                 'ASP': [1.000, 0.000, 0.000, 1.25417, 1.77556],
1048                 'HIS': [1.000, 0.000, 1.000, 1.21103, 3.02627],
1049                 'ARG': [0.000, 0.000, 1.000, 1.13573, 3.25143],
1050                 'LYS': [0.000, 0.000, 1.000, 1.22604, 4.50054],
1051                 'PRO': [0.000, 1.000, 1.000, 1.35131, 2.20525]
1052                         };
1053 stage_unres.loadFile("/myfiles/download-file/{{task.jobdirname}}/file_GB000.pdb", {defaultRepresentation: false}).then
1054        (function ( o ){
1055        var shape = new NGL.Shape("shape")
1056        var chain = ""
1057        o.addRepresentation("licorice");
1058        o.structure.eachAtom(function(atom){
1059          if (atom.atomname == "CA" && atom.chainname == chain) {
1060           px=CAx+(atom.x-CAx)/2;
1061           py=CAy+(atom.y-CAy)/2;
1062           pz=CAz+(atom.z-CAz)/2;
1063           shape.addSphere([px,py,pz],[0.643, 0.933, 0.960],0.6,"p");
1064          }
1065          if (atom.atomname == "CA") {
1066          chain= atom.chainname
1067          CAx= atom.x;
1068          CAy= atom.y
1069          CAz= atom.z
1070          }
1071          if (atom.atomname == "CB") {
1072           mx = (atom.x-CAx);
1073           my = (atom.y-CAy);
1074           mz = (atom.z-CAz);
1075           norm=Math.sqrt(mx*mx+my*my+mz*mz);
1076           res=atom.resname;
1077           var longaxis=resdb[res][4]
1078           var shortaxis=resdb[res][3]
1079           mx = mx /norm*longaxis;
1080           my = my /norm*longaxis;
1081           mz = mz /norm*longaxis;
1082           resn=res+atom.resno
1083           shape.addEllipsoid([ atom.x, atom.y, atom.z ],
1084               [ resdb[res][0], resdb[res][1], resdb[res][2]],
1085               shortaxis, [ mx, my, mz ], [ 0, shortaxis, 0 ],resn);
1086          }
1087        });
1088        var shapeComp = stage_unres.addComponentFromObject(shape)
1089        shapeComp.addRepresentation("buffer")
1090        o.autoView();
1091 });
1092
1093
1094
1095 var stage = new NGL.Stage("viewport_min");
1096 stage.setParameters( { backgroundColor: "white" } );
1097 Promise.all([
1098   stage.loadFile( "/myfiles/download-file/{{task.jobdirname}}/file_GB000.pdb" ,{defaultRepresentation: false}) .then( function( o ){
1099      o.addRepresentation( "backbone",{ color:
1100        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
1101      })
1102      o.addRepresentation( "licorice",{ color:
1103        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange","red"]
1104      })
1105      return o
1106   }),
1107
1108   stage.loadFile("/myfiles/download-file/{{task.jobdirname}}/plik.pdb",{defaultRepresentation: false}) .then( function( o ){
1109      o.addRepresentation( "backbone",{ name: "allatom", color:
1110        "residueindex",colorScale:["blue","cyan", "green","yellow","orange", "red"]
1111      })
1112      o.addRepresentation( "line",{ name: "allatomsc", color:
1113        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
1114        ,sele:"not hydrogen and sidechainAttached"
1115      })
1116      return o
1117   })
1118 ]).then(function (ol) {
1119    ol[ 0 ].superpose(ol[ 1 ], false, ".CA")
1120    ol[ 0 ].autoView()
1121 })
1122
1123 var allatom=true;
1124 var side=true;
1125 var toggleAll = document.getElementById( "toggleAllatom" );
1126 toggleAll.addEventListener( "click", function(){
1127                         allatom=! allatom;
1128                         stage.getRepresentationsByName(
1129                                 "allatom" ).list.forEach( function( repre ){
1130                                 repre.setVisibility( !repre.visible );
1131                         } );
1132             if (side) {
1133                         stage.getRepresentationsByName(
1134                                 "allatomsc" ).list.forEach( function( repre ){
1135                                 repre.setVisibility( !repre.visible );
1136                         } );
1137             }
1138 } );
1139 var toggleSidechains = document.getElementById("toggleSidechains2" );
1140 toggleSidechains.addEventListener( "click", function(){
1141           side=!side;
1142           if (allatom) {
1143                 stage.getRepresentationsByName(
1144                         "allatomsc" ).list.forEach( function( repre ){
1145                                 repre.setVisibility( !repre.visible );
1146                 } );
1147
1148           }
1149           stage.getRepresentationsByName("licorice").list.forEach( function( repre ){
1150                 repre.setVisibility( !repre.visible );
1151           } );
1152
1153 } );
1154 </script>
1155 {% endif %}
1156
1157 {% if task.type == "md" and task.md_start == "pdbstart" %}
1158 <script>
1159 window.addEventListener("resize",
1160      function (event) {
1161      stage.handleResize();
1162      },false);
1163
1164 var stage = new NGL.Stage("viewport_putty");
1165 stage.setParameters( { backgroundColor: "white" } );
1166
1167 var tooltip = document.createElement("div")
1168 Object.assign(tooltip.style, {
1169   display: "none",
1170   position: "fixed",
1171   zIndex: 10,
1172   pointerEvents: "none",
1173   backgroundColor: "rgba( 0, 0, 0, 0.6 )",
1174   color: "lightgrey",
1175   padding: "8px",
1176   fontFamily: "sans-serif"
1177 })
1178 document.body.appendChild(tooltip)
1179
1180 stage.loadFile("/myfiles/download-file/{{task.jobdirname}}/plik_bf.pdb", {defaultRepresentation: false}).then
1181        (function ( o ){
1182        o.addRepresentation("tube",{ color: "bfactor" , scale: 0.25,
1183        sele: "backbone",
1184        radius:"bfactor",
1185        colorScale:["blue","cyan", "green", "yellow","orange", "red"] });
1186        o.addRepresentation("licorice",{sele:"sidechainAttached and CYS and not hydrogen"});
1187        o.autoView();
1188 })
1189
1190 // remove default hoverPick mouse action
1191 stage.mouseControls.remove("hoverPick")
1192
1193 stage.signals.hovered.add(function (pickingProxy) {
1194   if (pickingProxy && (pickingProxy.atom || pickingProxy.bond)) {
1195     var atom = pickingProxy.atom || pickingProxy.closestBondAtom
1196     var mp = pickingProxy.mouse.position
1197     var bf= atom.bfactor.toFixed(2)
1198     tooltip.innerText = atom.qualifiedName()+" Fluctuation="+ bf
1199     tooltip.style.bottom = window.innerHeight - mp.y + 3 + "px"
1200     tooltip.style.left = mp.x + 3 + "px"
1201     tooltip.style.display = "block"
1202   } else {
1203     tooltip.style.display = "none"
1204   }
1205 })
1206 </script>
1207 {% endif %}
1208
1209 {% if task.type == "md" and task.md_mdpdb %}
1210 <script>
1211 window.addEventListener("resize",
1212      function (event) {
1213      stage.handleResize();
1214      },false);
1215
1216       var stage = new NGL.Stage("viewport_traj");
1217       stage.setParameters( { backgroundColor: "white" } );
1218       stage.setParameters( { cameraType: "orthographic" } );
1219       var traj;
1220       var player;
1221       stage.loadFile( "/myfiles/download-file/{{task.jobdirname}}/file_MD000.pdb", {
1222        asTrajectory: true } ) .then( function( o ){
1223         o.setName ("unres_md");
1224         o.addRepresentation( "backbone",{ color:
1225        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
1226         });
1227         o.addRepresentation( "licorice",{ color:
1228        "residueindex",colorScale:["blue","cyan", "green", "yellow","orange", "red"]
1229         });
1230         o.setPosition([0, 0, 100]);
1231         o.autoView();
1232         o.addTrajectory();
1233       });
1234
1235             var toggleSidechains = document.getElementById( "toggleSidechains1" );
1236             toggleSidechains.addEventListener( "click", function(){
1237                                                         stage.getRepresentationsByName( "licorice" ).list.forEach( function( repre ){
1238                                                                         repre.setVisibility( !repre.visible );
1239                                                         } );
1240             } );
1241
1242
1243       function numberWithCommas(x) {
1244                 return x.toString().replace(/\B(?=(\d{3})+(?!\d))/g, ",");
1245       }
1246       var toggleRunMDs = document.getElementById( "toggleRunMDs" );
1247       var isRunning = false;
1248       toggleRunMDs.addEventListener( "click", function(){
1249          var trajComp = stage.getComponentsByName("unres_md").list[0].trajList[0];
1250          var player = new NGL.TrajectoryPlayer(trajComp.trajectory, {timeout: 10, mode: "once"});
1251                                 if( !isRunning ){
1252                                         player.play();
1253                                         isRunning = true;
1254
1255                     trajComp.signals.frameChanged.add(function(){
1256                       var fnum=trajComp.trajectory.currentFrame+1;
1257                       clipRange.value = fnum;
1258                       clipRange_val.innerHTML = numberWithCommas(parseInt(clipRange.value*1));
1259                     });
1260
1261                                 }else{
1262                                         player.play();
1263                                         player.pause();
1264                                         isRunning = false;
1265                                 }
1266       } );
1267       var clipRange = document.getElementById( "clipRange" );
1268       var clipRange_val = document.getElementById( "clipRange_val" );
1269       clipRange.oninput = function( e ){
1270                 var trajComp = stage.getComponentsByName("unres_md").list[0].trajList[0];
1271                 trajComp.setFrame(e.target.value-1)
1272                 clipRange_val.innerHTML = numberWithCommas(parseInt(e.target.value*1));
1273       };
1274
1275 </script>
1276 {% endif %}
1277
1278
1279 {% endblock %}