1 clean code and combine piasek and etoh versions
3 make easy install on any system with pbs
5 add javascript instead of separate forms
7 # option of automatic download file from PDB using id
11 # missing residues (chain breaks) - done
12 # unknown residues - done
14 max number of dissulfides (30),
18 check input for other errors (sequence ?)
20 # add web viewer NGL WebGL
23 # add BOXX BOXY BOXZ in advanced md and mremd
26 dynamic dissulfides input - all and selected cys
28 homology restraints input
30 # secondary structure restraints
33 other restraints input
38 automatic secondary structure restrains (psipred)
40 MREMD - add cluster parameters, change after run and rerun only cluster analysis
41 - button to make movie from selected trajectory after run
50 automatic rm of old jobs ?
54 # include a simple mechanism to try out sample data provided by the authors,
55 # for example, a button for automatic loading of the data. Sample data must be
56 # accessible to users so that they can confirm data formatting requirements
59 # contain help pages or a tutorial with links to sample output that performs
60 # interactively in the same way as real output. The help pages must include
61 # information on how to interpret the results returned by the web server
64 # be primarily web-based and viewable on the website. Use of browser plugins
65 # for data visualization is encouraged. However, use of Flash plugins is
66 # discouraged due to security issues and websites that use Java plugins will
67 # no longer be accepted
70 # provide a web link to the results if the website is not able to return
71 # results immediately. The link should be provided at the time of data
72 # submission and allow the user to bookmark and access the results at a later
73 # time. Ideally, the link will report the status of the job (queued, running,
74 # or finished). Do not assume that users will provide an email address for
75 # results notification. Any request for an email must state that it is
76 # optional. Websites that use a guest login will not be approved
78 # OK link uses task.id and user.id
79 # http://ha1.chem.univ.gda.pl:8001/details1/19da81cb0ad5492dac8e4eaefd28949e/942/
81 links are not save - lazy user can read other lazy users jobs ?
83 # keep every user’s submitted data private and not viewable by anyone other
84 # than the user or those given permission by the user
86 # OK - additionaly blocks links of regular user without login