1 ********************************************************************************
2 * Settings for the program of united-residue peptide simulation in real space *
4 * ------- As of 6/23/01 ----------- *
6 ********************************************************************************
7 c implicit real*8 (a-h,o-z)
8 C Max. number of processors.
9 c parameter (maxprocs=128)
10 C Max. number of fine-grain processors
11 c parameter (max_fg_procs=maxprocs)
12 C Max. number of coarse-grain processors
13 c parameter (max_cg_procs=maxprocs)
14 C Max. number of AA residues
16 c parameter (maxres=250)
17 parameter (maxres=500)
18 C Appr. max. number of interaction sites
20 parameter (maxres2=2*maxres)
21 C Max number of symetries
22 integer maxsym,maxperm
23 parameter (maxsym=12,maxperm=120)
24 C Max. number of variables
26 parameter (maxvar=4*maxres)
27 C Max. number of groups of interactions that a given SC is involved in
29 parameter (maxint_gr=2)
30 C Max. number of derivatives of virtual-bond and side-chain vectors in theta
33 parameter (maxdim=(maxres-1)*(maxres-2)/2)
34 C Max. number of SC contacts
36 parameter (maxcont=12*maxres)
37 C Max. number of contacts per residue
39 parameter (maxconts=maxres)
40 C Number of AA types (at present only natural AA's will be handled
42 parameter (ntyp=24,ntyp1=ntyp+1)
44 parameter (nntyp=ntyp*(ntyp+1)/2)
45 C Max. number of types of dihedral angles & multiplicity of torsional barriers
46 C and the number of terms in double torsionals
47 integer maxtor,maxterm,maxlor,maxtermd_1,maxtermd_2
48 parameter (maxtor=4,maxterm=10,maxlor=3,maxtermd_1=8,maxtermd_2=8)
49 c Max number of torsional terms in SCCOR
51 parameter (maxterm_sccor=6)
52 C Max. number of residue types and parameters in expressions for
53 C virtual-bond angle bending potentials
54 integer maxthetyp,maxthetyp1,maxtheterm,maxtheterm2,maxtheterm3,
55 & maxsingle,maxdouble,mmaxtheterm
56 parameter (maxthetyp=3,maxthetyp1=maxthetyp+1,maxtheterm=20,
57 & maxtheterm2=6,maxtheterm3=4,maxsingle=6,maxdouble=4,
58 & mmaxtheterm=maxtheterm)
59 C Max. number of lobes in SC distribution
62 C Max. number of S-S bridges
65 C Max. number of dihedral angle constraints
67 parameter (maxdih_constr=maxres)
68 C Max. number of patterns in the pattern database
70 parameter (maxseq=1000)
71 C Max. number of residues in a peptide in the database
73 parameter (maxres_base=1000)
74 C Max. number of threading attempts
76 parameter (maxthread=2000)
77 C Max. number of move types in MCM
79 parameter (maxmovetype=4)
80 C Max. number of stored confs. in MC/MCM simulation
82 parameter (maxsave=2000)
83 C Max. number of conformations in Master's cache array
85 parameter (max_cache=1000)
86 C Max. number of conformations in the pool
88 parameter (max_pool=1000)
89 C Number of threads in deformation
90 integer max_thread,max_thread2
91 parameter (max_thread=40,max_thread2=2*max_thread)
92 C Number of steps in DSM
94 parameter (max_step=1)
95 C Number of structures to compare at t=0
96 integer max_threadss,max_threadss2
97 parameter (max_threadss=80,max_threadss2=2*max_threadss)
98 C Maxmimum number of angles per residue
101 C Maximum number of groups of angles
103 parameter (mxgr=2*maxres)
104 C Maximum number of chains
107 C Maximum number of generated conformations
109 parameter (mxio=1000)
110 C Maximum number of seed
112 parameter (max_seed=100)
113 C Maximum number of structures for ZSCORE for each protein
116 C Maximum number of structures stored for comparison for ZSCORE for each protein
119 C Maximum number of proteins for ZSCORE
121 parameter (maxprotzs=1)
122 C Maximum number of conf in rmsdbank
124 parameter (maxrmsdb=110)
125 C Maximum number of bankt conformations
127 parameter (mxiot=mxio)
128 c Maximum number of conformations in MCMF
130 parameter (maxstr_mcmf=800)
131 c Maximum number of families in MCMF
133 parameter (maxfam_p=20)
134 c Maximum number of structures in family in MCMF
136 parameter (maxstr_fam=40)
137 C Maximum number of threads in MCMF
138 integer maxthread_mcmf
139 parameter (maxthread_mcmf=10)
140 C Maximum number of SC local term fitting function coefficiants
142 parameter (maxsccoef=65)
143 C Maximum number of terms in SC bond-stretching potential
145 parameter (maxbondterm=3)