Site Name: dell15
Build Name: devel Linux-gfortan-MPI-DFA E0LL2Y (view notes)
Stamp: 20230528-2203-Nightly (related builds)
Time: 2023-05-29T03:46:12 CEST
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.13.0-170-generic
OS Version: #220-Ubuntu SMP Thu May 9 12:40:49 UTC 2019
Compiler Version: unknown
CTest version: ctest-2.8.12.2

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Stage: Update (0 errors, 0 warnings)

Start Time: 2023-05-29T03:46:11 CEST
End Time: 2023-05-29T03:46:11 CEST
Update Command: "/usr/bin/git" "fetch"
Update Type: GIT
Number of Updates: 0

Configure (0 errors, 0 warnings)

Start Time: 2023-05-29T03:46:11 CEST
End Time: 2023-05-29T03:46:11 CEST
Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_Fortran_COMPILER=gfortran -DUNRES_MD_FF=E0LL2Y -DUNRES_DFA=1 -DUNRES_CSA_FF=E0LL2Y -DUNRES_WITH_MPI=1 "-GUnix Makefiles" "/tmp/cdash/devel/source"
Configure Return Value: 0
Configure Output:
-- The Fortran compiler identification is GNU
-- The C compiler identification is GNU 4.8.4
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
MPI found
Detected 64-bit architecture
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/cdash/devel/build

View Configure Summary

Build (1 errors, 45 warnings)

Build command: /usr/bin/make -i -j4
Start Time: 2023-05-29T03:46:12 CEST
End Time: 2023-05-29T03:46:54 CEST

gfortran: error: unrecognized command line option ‘-shared-intel’
[100%] Built target UNRES_BIN-MD-M
View Errors Summary

Build Warnings (45)
[ 10%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/linmin.f.o
[ 10%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/math.f.o
[ 11%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/minima.f.o
[ 11%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/enecalc1.F.o
[ 11%] [ 11%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/output.f.o
Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/geomout.F.o
/.../source/source/cluster/unres/src/geomout.F:166.37:

  180 format (I5,F12.3,I2,8(1X,2I3,$))                                  
                                     1
Warning: $ should be the last specifier in format at (1)
/.../source/source/cluster/unres/src/geomout.F:167.29:

  190 format (3X,11(1X,2I3,$))                                          
                             1
Warning: $ should be the last specifier in format at (1)
[ 11%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/scales.f.o
/.../source/source/cluster/wham/src-HCD-5D/energy_p_new.F:2365.22:

      common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj,faclipij     
                      1
Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (40 vs 32 bytes)
[ 11%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/add.f.o
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[ 13%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/initialize.f.o
[ 14%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/intcor.f.o
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[ 14%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/energy_p_new.F.o
[ 14%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/matmult.f.o
[ 15%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/misc.f.o
[ 15%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/blas.f.o
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/.../source/source/wham/src-HCD-5D/energy_p_new.F:2384.22:

      common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj,faclipij     
                      1
Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (40 vs 32 bytes)
[ 16%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/pinorm.f.o
[ 16%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/readpdb.f.o
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[ 17%] [ 17%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/cartprint.f.o
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[ 18%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/chainbuild.F.o
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[ 19%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/check_bond.f.o
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[ 19%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/checkder_p.F.o
[ 30%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/eigen.f.o
Linking Fortran executable ../../../bin/xdrf2pdb
[ 30%] Built target UNRES_XDRF2PDB_BIN-M
[ 30%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/elecont.f.o
[ 30%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/fitsq.f.o
[ 31%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/geomout.F.o
/.../source/source/cluster/wham/src-HCD-5D/geomout.F:189.40:

  180 format (I5,2F12.3,I2,$,8(1X,2I3,$))                               
                                        1
Warning: $ should be the last specifier in format at (1)
/.../source/source/cluster/wham/src-HCD-5D/geomout.F:190.29:

  190 format (3X,11(1X,2I3,$))                                          
                             1
Warning: $ should be the last specifier in format at (1)
[ 32%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/energy_split-sep.F.o
[ 32%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/gnmr1.f.o
[ 32%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/hc.f.o
[ 32%] [ 33%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/entmcm.F.o
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[ 33%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/fitsq.f.o
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[ 34%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/intcor.f.o
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[ 35%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/int_from_cart1.f.o
[ 39%] [ 39%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/molread_zs.F.o
[ 39%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/gnmr1.f.o
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[ 41%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/readrtns.F.o
/.../source/source/unres/src-HCD-5D/initialize_p.F:463.28:

      common /przechowalnia/ iturn3_start_all(0:max_fg_procs),          
                            1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (6676504 vs 6150168 bytes)
[ 41%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/intcartderiv.F.o
[ 41%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/read_constr_homology.F.o
[ 41%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/permut.F.o
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[ 43%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/pinorm.f.o
[ 43%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/cartprint.f.o
[ 43%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/chainbuild.F.o
[ 43%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/printmat.f.o
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[ 47%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/kinetic_lesyng.F.o
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Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/make_ensemble1.F.o
/.../source/source/cluster/wham/src-HCD-5D/readpdb-mult.F:452.35:

            call sccenter(ires,iii,sccor)                               
                                   1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
/.../source/source/cluster/wham/src-HCD-5D/readpdb-mult.F:474.43:

                call sccenter(ires_old,iii,sccor)                       
                                           1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
/.../source/source/cluster/wham/src-HCD-5D/readpdb-mult.F:606.31:

        call sccenter(ires,iii,sccor)                                   
                               1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
[ 50%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/lagrangian_lesyng.F.o
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Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/wrtclust.f.o
[ 56%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/minimize_p.F.o
/.../source/source/unres/src-HCD-5D/MD_A-MTS.F:1656.23:

      common /lbfgstat/ status,niter,nfun                               
                       1
Warning: Padding of 3 bytes required before 'niter' in COMMON 'lbfgstat' at (1); reorder elements or use -fno-align-commons
[ 57%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/work_partition.F.o
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Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/seq2chains.f.o
[ 59%] [ 60%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/pinorm.f.o
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/.../source/source/unres/src-HCD-5D/MREMD.F:1400.29:

       common /przechowalnia/ d_restart1,d_restart2                     
                             1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (294912000 vs 147505152 bytes)
/.../source/source/unres/src-HCD-5D/MREMD.F:1809.28:

      common /przechowalnia/ d_restart1                                 
                            1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (147456000 vs 294912000 bytes)
/.../source/source/unres/src-HCD-5D/MREMD.F:2004.28:

      common /przechowalnia/ d_restart1                                 
                            1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (147456000 vs 294912000 bytes)
[ 67%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/wham_calc1.F.o
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/.../source/source/cluster/wham/src-HCD-5D/dfa.F:1731.15:

       do i=1,0                                                         
               1

Build Log line 274


File: /tmp/cdash/devel/build/Warning: DO loop at Line: 1
Warning: DO loop at (1) will be executed zero times
/.../source/source/cluster/wham/src-HCD-5D/dfa.F:1019.20:

      common /sheca/     bx,by,bz                                       
                    1
Warning: Named COMMON block 'sheca' at (1) shall be of the same size as elsewhere (168000 vs 19200 bytes)
/.../source/source/cluster/wham/src-HCD-5D/dfa.F:1020.19:

      common /shee/      vbeta,vbet,vbetp,vbetm                         
                   1
Warning: Named COMMON block 'shee' at (1) shall be of the same size as elsewhere (392000024 vs 5120024 bytes)
/.../source/source/cluster/wham/src-HCD-5D/dfa.F:1022.19:

      common /shef/      shefx, shefy, shefz                            
                   1
Warning: Named COMMON block 'shef' at (1) shall be of the same size as elsewhere (2016000 vs 230400 bytes)
/.../source/source/cluster/wham/src-HCD-5D/dfa.F:1021.20:

      common /shetf/     shetfx,shetfy,shetfz                           
                    1
Warning: Named COMMON block 'shetf' at (1) shall be of the same size as elsewhere (168000 vs 19200 bytes)
[ 69%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/muca_md.F.o
[ 70%] Building C object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/proc_proc.c.o
[ 70%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/newconf.f.o
[ 70%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/oligomer.F.o

Build Log line 299


File: source/wham/src-HCD-5D/oligomer.F Line: 37
/.../source/source/wham/src-HCD-5D/oligomer.F:37:0: warning: extra tokens at end of #endif directive [enabled by default]
 #endif DEBUG
 ^

Build Log line 302


File: source/wham/src-HCD-5D/oligomer.F Line: 87
/.../source/source/wham/src-HCD-5D/oligomer.F:87:0: warning: extra tokens at end of #endif directive [enabled by default]
 #endif;
 ^
[ 70%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/readrtns_compar.F.o
[ 71%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/readpdb-mult.F.o
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/.../source/source/wham/src-HCD-5D/readpdb-mult.F:454.35:

            call sccenter(ires,iii,sccor)                               
                                   1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
/.../source/source/wham/src-HCD-5D/readpdb-mult.F:476.43:

                call sccenter(ires_old,iii,sccor)                       
                                           1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
/.../source/source/wham/src-HCD-5D/readpdb-mult.F:608.31:

        call sccenter(ires,iii,sccor)                                   
                               1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
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/.../source/source/wham/src-HCD-5D/conf_compar.F:393.27:

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Build Log line 383


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       do i=1,0                                                         
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/.../source/source/wham/src-HCD-5D/dfa.F:1020.20:

      common /sheca/     bx,by,bz                                       
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/.../source/source/wham/src-HCD-5D/dfa.F:1021.19:

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/.../source/source/wham/src-HCD-5D/dfa.F:1023.19:

      common /shef/      shefx, shefy, shefz                            
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/.../source/source/wham/src-HCD-5D/dfa.F:1022.20:

      common /shetf/     shetfx,shetfy,shetfz                           
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/.../source/source/unres/src-HCD-5D/unres.F:415.23:

      common /lbfgstat/ status,niter,nfun                               
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/.../source/source/unres/src-HCD-5D/unres.F:229.23:

      common /lbfgstat/ status,niter,nfun                               
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/.../source/source/unres/src-HCD-5D/lbfgs.F:85.23:

      common /lbfgstat/ status,niter,ncalls                             
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       do i=1,0                                                         
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/.../source/source/unres/src-HCD-5D/dfa.F:1106.20:

      common /sheca/     bx,by,bz                                       
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/.../source/source/unres/src-HCD-5D/dfa.F:1107.19:

      common /shee/      vbeta,vbet,vbetp,vbetm                         
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/.../source/source/unres/src-HCD-5D/dfa.F:1109.19:

      common /shef/      shefx, shefy, shefz                            
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/.../source/source/unres/src-HCD-5D/dfa.F:1108.20:

      common /shetf/     shetfx,shetfy,shetfz                           
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/.../source/source/unres/src-HCD-5D/energy_p_new-sep_barrier.F:1625.22:

      common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj              
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      common /przechowalnia/ zapas                                      
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/.../source/source/unres/src-HCD-5D/energy_p_new_barrier.F:3996.22:

      common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj,faclipij     
                      1
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View Warnings Summary

Test (13 passed, 21 failed, 0 not run)
View Tests Summary