Start Time: 2020-06-14T03:47:01 CEST End Time: 2020-06-14T03:47:02 CEST Update Command: "/usr/bin/git" "fetch" Update Type: GIT Number of Updates: 0
Configure (0 errors, 0 warnings)
Start Time: 2020-06-14T03:47:02 CEST End Time: 2020-06-14T03:47:02 CEST Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_Fortran_COMPILER=gfortran -DUNRES_MD_FF=E0LL2Y -DUNRES_DFA=0 -DUNRES_CSA_FF=E0LL2Y -DUNRES_WITH_MPI=1 "-GUnix Makefiles" "/tmp/cdash/devel/source" Configure Return Value: 0 Configure Output:
-- The Fortran compiler identification is GNU 7.5.0
-- The C compiler identification is GNU 7.5.0
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
MPI found
Detected 64-bit architecture
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/cdash/devel/build
Build command: /usr/bin/cmake --build . --config "Release" -- -i -j4 Start Time: 2020-06-14T03:47:06 CEST End Time: 2020-06-14T03:47:24 CEST
[ 51%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/kinetic_lesyng.F.o
[ 51%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/misc.f.o
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[ 51%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/readpdb.F.o
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[ 53%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/lagrangian_lesyng.F.o
/.../source/source/unres/src-HCD-5D/lagrangian_lesyng.F:351:60:
double precision Gcopy(maxres2,maxres2),Ghalf(mmaxres2),
1
Error: Symbol 'mmaxres2' at (1) has no IMPLICIT type
[ 53%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/readrtns.F.o
[ 53%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/local_move.f.o
[ 53%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/map.F.o
[ 54%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/rescode.f.o
[ 55%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/matmult.f.o
[ 55%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/setup_var.f.o
[ 55%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/mc.F.o
[ 55%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/mcm.F.o
[ 56%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/srtclust.f.o
[ 57%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/MD_A-MTS.F.o
[ 57%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/ssMD.F.o
[ 57%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/permut.F.o
/.../source/source/unres/src-HCD-5D/MD_A-MTS.F:432:39:
if (potEcomp(0).gt.0.99e20 .or. isnan(potEcomp(0)).gt.0) then
1
Error: Operands of comparison operator '.gt.' at (1) are LOGICAL(4)/INTEGER(4)
[ 57%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/timing.F.o
[ 57%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/minimize_p.F.o
[ 58%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/minim_jlee.F.o
/.../source/source/unres/src-HCD-5D/minimize_p.F:276:47:
& nginv_start(0),MPI_DOUBLE_PRECISION,gcopy(1,1),
1
Error: Function 'gcopy' at (1) has no IMPLICIT type
Error: Function 'gcopy' at (1) has no IMPLICIT type
[ 59%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/track.F.o
[ 59%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/seq2chains.f.o
[ 59%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/minim_mcmf.F.o
[ 60%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/chain_symmetry.F.o
[ 60%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/wrtclust.f.o
[ 60%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/misc.f.o
[ 61%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/moments.F.o
[ 62%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/pinorm.f.o
[ 62%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/iperm.f.o
[ 62%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/MP.F.o
wham_multparm.F:(.text+0x4d): relocation truncated to fit: R_X86_64_PC32 against symbol `iounits_' defined in COMMON section in CMakeFiles/UNRES_WHAM_M_BIN.dir/wham_multparm.F.o
wham_multparm.F:(.text+0x8e): relocation truncated to fit: R_X86_64_PC32 against symbol `mpi_data_' defined in COMMON section in CMakeFiles/UNRES_WHAM_M_BIN.dir/wham_multparm.F.o
wham_multparm.F:(.text+0x96): relocation truncated to fit: R_X86_64_PC32 against symbol `mpi_data_' defined in COMMON section in CMakeFiles/UNRES_WHAM_M_BIN.dir/wham_multparm.F.o
wham_multparm.F:(.text+0xa6): relocation truncated to fit: R_X86_64_PC32 against symbol `mpi_data_' defined in COMMON section in CMakeFiles/UNRES_WHAM_M_BIN.dir/wham_multparm.F.o
wham_multparm.F:(.text+0xaf): relocation truncated to fit: R_X86_64_PC32 against symbol `mpi_data_' defined in COMMON section in CMakeFiles/UNRES_WHAM_M_BIN.dir/wham_multparm.F.o
wham_multparm.F:(.text+0xe2): relocation truncated to fit: R_X86_64_PC32 against symbol `mpi_data_' defined in COMMON section in CMakeFiles/UNRES_WHAM_M_BIN.dir/wham_multparm.F.o
wham_multparm.F:(.text+0x118): relocation truncated to fit: R_X86_64_PC32 against symbol `mpi_data_' defined in COMMON section in CMakeFiles/UNRES_WHAM_M_BIN.dir/wham_multparm.F.o
wham_multparm.F:(.text+0x11f): relocation truncated to fit: R_X86_64_PC32 against symbol `mpi_data_' defined in COMMON section in CMakeFiles/UNRES_WHAM_M_BIN.dir/wham_multparm.F.o
wham_multparm.F:(.text+0x12a): relocation truncated to fit: R_X86_64_PC32 against symbol `mpi_data_' defined in COMMON section in CMakeFiles/UNRES_WHAM_M_BIN.dir/wham_multparm.F.o
wham_multparm.F:(.text+0x34c): additional relocation overflows omitted from the output
collect2: error: ld returned 1 exit status
[ 86%] Built target UNRES_WHAM_M_BIN
[ 86%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/rmdd.f.o
[ 86%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/rmsd.F.o
[ 87%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/sc_move.F.o
[ 87%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/shift.F.o
[ 87%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/sort.f.o
[ 88%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/stochfric.F.o
/.../source/source/unres/src-HCD-5D/stochfric.F:540:28:
common /przechowalnia/ ginvfric,Ghalf,fcopy
gfortran: error: CMakeFiles/UNRES_BIN-MD-M.dir/lagrangian_lesyng.F.o: No such file or directory
gfortran: error: CMakeFiles/UNRES_BIN-MD-M.dir/MD_A-MTS.F.o: No such file or directory
gfortran: error: CMakeFiles/UNRES_BIN-MD-M.dir/minimize_p.F.o: No such file or directory
gfortran: error: unrecognized command line option '-shared-intel'; did you mean '-shared-libgcc'?